RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 FAM173BQ6P4H8 233 aa12.65□□□□□ -0.38
TTC28-201ENST00000397906 ERCC5P28715 1186 aaPredicted RBP12.65□□□□□ -0.38
TTC28-201ENST00000397906 PAXBP1Q9Y5B6 917 aa12.65□□□□□ -0.38
TTC28-201ENST00000397906 MLH3Q9UHC1 1453 aa12.65□□□□□ -0.38
TTC28-201ENST00000397906 GPKOWQ92917 476 aaPredicted RBP eCLIP12.65□□□□□ -0.38
TTC28-201ENST00000397906 MMS19Q96T76 1030 aa12.65□□□□□ -0.38
TTC28-201ENST00000397906 MTUS1Q9ULD2 1270 aa12.65□□□□□ -0.38
TTC28-201ENST00000397906 POLA2Q14181 598 aa12.65□□□□□ -0.38
TTC28-201ENST00000397906 NOX5Q96PH1 765 aa12.65□□□□□ -0.38
TTC28-201ENST00000397906 FAM193BQ96PV7 902 aaPredicted RBP12.65□□□□□ -0.38
TTC28-201ENST00000397906 CSRNP1Q96S65 589 aa12.65□□□□□ -0.38
TTC28-201ENST00000397906 PSTPIP2Q9H939 334 aa12.65□□□□□ -0.38
TTC28-201ENST00000397906 SHANK2Q9UPX8 1470 aa12.65□□□□□ -0.38
TTC28-201ENST00000397906 SLU7O95391 586 aaKnown RBP12.65□□□□□ -0.39
TTC28-201ENST00000397906 PFDN4Q9NQP4 134 aa12.65□□□□□ -0.39
TTC28-201ENST00000397906 ARHGAP44Q17R89 818 aa12.65□□□□□ -0.39
TTC28-201ENST00000397906 CABP7Q86V35 215 aa12.65□□□□□ -0.39
TTC28-201ENST00000397906 RAD17O75943 681 aa12.64□□□□□ -0.39
TTC28-201ENST00000397906 LRRC24Q50LG9 513 aa12.64□□□□□ -0.39
TTC28-201ENST00000397906 ZBTB38Q8NAP3 1195 aaPredicted RBP12.64□□□□□ -0.39
TTC28-201ENST00000397906 KIAA1524Q8TCG1 905 aa12.64□□□□□ -0.39
TTC28-201ENST00000397906 PALM3A6NDB9 673 aaPredicted RBP12.64□□□□□ -0.39
TTC28-201ENST00000397906 CNKSR1Q969H4 720 aa12.64□□□□□ -0.39
TTC28-201ENST00000397906 TSGA10Q9BZW7 698 aa12.64□□□□□ -0.39
TTC28-201ENST00000397906 CHURC1Q8WUH1 139 aa12.64□□□□□ -0.39
TTC28-201ENST00000397906 CYP2J2P51589 502 aa12.64□□□□□ -0.39
TTC28-201ENST00000397906 DCUN1D2Q6PH85 259 aa12.64□□□□□ -0.39
TTC28-201ENST00000397906 DEPTORQ8TB45 409 aa12.64□□□□□ -0.39
TTC28-201ENST00000397906 ZSCAN10Q96SZ4 725 aaPredicted RBP12.64□□□□□ -0.39
TTC28-201ENST00000397906 ATXN8OSP0DMR3 200 aa12.64□□□□□ -0.39
TTC28-201ENST00000397906 PAK1Q13153 545 aa12.64□□□□□ -0.39
TTC28-201ENST00000397906 HACE1Q8IYU2 909 aa12.64□□□□□ -0.39
TTC28-201ENST00000397906 RIOK1Q9BRS2 568 aaKnown RBP12.64□□□□□ -0.39
TTC28-201ENST00000397906 NBPF3Q9H094 633 aa12.64□□□□□ -0.39
TTC28-201ENST00000397906 MYO5CQ9NQX4 1742 aa12.64□□□□□ -0.39
TTC28-201ENST00000397906 ZBTB24O43167 697 aaPredicted RBP12.64□□□□□ -0.39
TTC28-201ENST00000397906 ATP2B4P23634 1241 aa12.64□□□□□ -0.39
TTC28-201ENST00000397906 PPARDQ03181 441 aa12.64□□□□□ -0.39
TTC28-201ENST00000397906 SAMD9Q5K651 1589 aa12.64□□□□□ -0.39
TTC28-201ENST00000397906 CCPG1Q9ULG6 757 aa12.64□□□□□ -0.39
TTC28-201ENST00000397906 TMEM232C9JQI7 657 aa12.64□□□□□ -0.39
TTC28-201ENST00000397906 NR1I2O75469 434 aa12.64□□□□□ -0.39
TTC28-201ENST00000397906 TBC1D10BQ4KMP7 808 aaPredicted RBP12.64□□□□□ -0.39
TTC28-201ENST00000397906 GREM2Q9H772 168 aa12.64□□□□□ -0.39
TTC28-201ENST00000397906 CALCOCO2Q13137 446 aa12.63□□□□□ -0.39
TTC28-201ENST00000397906 C8orf34Q49A92 452 aa12.63□□□□□ -0.39
TTC28-201ENST00000397906 NLGN1Q8N2Q7 840 aa12.63□□□□□ -0.39
TTC28-201ENST00000397906 NSRP1Q9H0G5 558 aaKnown RBP12.63□□□□□ -0.39
TTC28-201ENST00000397906 MYO1AQ9UBC5 1043 aa12.63□□□□□ -0.39
TTC28-201ENST00000397906 E7EWF7 191 aa12.63□□□□□ -0.39
TTC28-201ENST00000397906 STMN4Q9H169 189 aaPredicted RBP12.63□□□□□ -0.39
TTC28-201ENST00000397906 ZNF804BA4D1E1 1349 aa12.63□□□□□ -0.39
TTC28-201ENST00000397906 ERFEQ4G0M1 354 aa12.63□□□□□ -0.39
TTC28-201ENST00000397906 LZTS2Q9BRK4 669 aa12.63□□□□□ -0.39
TTC28-201ENST00000397906 PLXNC1O60486 1568 aa12.63□□□□□ -0.39
TTC28-201ENST00000397906 CETN3O15182 167 aa12.63□□□□□ -0.39
TTC28-201ENST00000397906 PABPC4Q13310 644 aaKnown RBP eCLIP12.63□□□□□ -0.39
TTC28-201ENST00000397906 YEATS2Q9ULM3 1422 aa12.63□□□□□ -0.39
TTC28-201ENST00000397906 CHL1O00533 1208 aa12.63□□□□□ -0.39
TTC28-201ENST00000397906 MYL5Q02045 173 aa12.63□□□□□ -0.39
TTC28-201ENST00000397906 CCT6BQ92526 530 aa12.63□□□□□ -0.39
TTC28-201ENST00000397906 HOXB7P09629 217 aa12.63□□□□□ -0.39
TTC28-201ENST00000397906 ABCB5Q2M3G0 1257 aa12.63□□□□□ -0.39
TTC28-201ENST00000397906 ANKFY1Q9P2R3 1169 aa12.63□□□□□ -0.39
TTC28-201ENST00000397906 ZNF710Q8N1W2 664 aa12.63□□□□□ -0.39
TTC28-201ENST00000397906 CCDC125Q86Z20 511 aa12.63□□□□□ -0.39
TTC28-201ENST00000397906 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.63□□□□□ -0.39
TTC28-201ENST00000397906 AKR1B15C9JRZ8 316 aaPredicted RBP12.62□□□□□ -0.39
TTC28-201ENST00000397906 SERPINB2P05120 415 aa12.62□□□□□ -0.39
TTC28-201ENST00000397906 NSMCE1Q8WV22 266 aa12.62□□□□□ -0.39
TTC28-201ENST00000397906 POLR2MP0CAP2 368 aa12.62□□□□□ -0.39
TTC28-201ENST00000397906 PRKAG2Q9UGJ0 569 aa12.62□□□□□ -0.39
TTC28-201ENST00000397906 STK10O94804 968 aaKnown RBP12.62□□□□□ -0.39
TTC28-201ENST00000397906 XKR9Q5GH70 373 aa12.62□□□□□ -0.39
TTC28-201ENST00000397906 ATRIPQ8WXE1 791 aa12.62□□□□□ -0.39
TTC28-201ENST00000397906 TECP42680 631 aa12.62□□□□□ -0.39
TTC28-201ENST00000397906 FAM160A1Q05DH4 1040 aa12.62□□□□□ -0.39
TTC28-201ENST00000397906 TRIM31Q9BZY9 425 aa12.62□□□□□ -0.39
TTC28-201ENST00000397906 BSPRYQ5W0U4 402 aa12.62□□□□□ -0.39
TTC28-201ENST00000397906 GPBP1Q86WP2 473 aa12.62□□□□□ -0.39
TTC28-201ENST00000397906 TBC1D31Q96DN5 1066 aa12.62□□□□□ -0.39
TTC28-201ENST00000397906 ARFGAP3Q9NP61 516 aa12.62□□□□□ -0.39
TTC28-201ENST00000397906 SEPT14Q6ZU15 432 aa12.62□□□□□ -0.39
TTC28-201ENST00000397906 PPP1R16BQ96T49 567 aa12.62□□□□□ -0.39
TTC28-201ENST00000397906 KDRP35968 1356 aa12.62□□□□□ -0.39
TTC28-201ENST00000397906 TCOF1Q13428 1488 aaKnown RBP12.62□□□□□ -0.39
TTC28-201ENST00000397906 KCTD1Q719H9 257 aa12.62□□□□□ -0.39
TTC28-201ENST00000397906 IGSF22Q8N9C0 903 aa12.62□□□□□ -0.39
TTC28-201ENST00000397906 BAG1Q99933 345 aaPredicted RBP12.62□□□□□ -0.39
TTC28-201ENST00000397906 MTRF1LQ9UGC7 380 aaKnown RBP12.62□□□□□ -0.39
TTC28-201ENST00000397906 SEC62Q99442 399 aaKnown RBP12.62□□□□□ -0.39
TTC28-201ENST00000397906 BABAM1Q9NWV8 329 aa12.62□□□□□ -0.39
TTC28-201ENST00000397906 GIGYF1O75420 1035 aaPredicted RBP12.62□□□□□ -0.39
TTC28-201ENST00000397906 CNGA4Q8IV77 575 aa12.62□□□□□ -0.39
TTC28-201ENST00000397906 LIG4P49917 911 aa12.61□□□□□ -0.39
TTC28-201ENST00000397906 CASC4Q6P4E1 433 aa12.61□□□□□ -0.39
TTC28-201ENST00000397906 GSDMBQ8TAX9 411 aa12.61□□□□□ -0.39
TTC28-201ENST00000397906 TRIM7Q9C029 511 aa12.61□□□□□ -0.39
TTC28-201ENST00000397906 UGGT1Q9NYU2 1555 aa12.61□□□□□ -0.39
TTC28-201ENST00000397906 POLGP54098 1239 aaPredicted RBP12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms