RNA–Protein interactions for RNA: ENST00000397378.7

NEDD9-203, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 470 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-203ENST00000397378 CYBAP13498 195 aa11.69□□□□□ -0.54
NEDD9-203ENST00000397378 C1orf53Q5VUE5 145 aa11.69□□□□□ -0.54
NEDD9-203ENST00000397378 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.69□□□□□ -0.54
NEDD9-203ENST00000397378 C11orf16Q9NQ32 467 aa11.69□□□□□ -0.54
NEDD9-203ENST00000397378 TMEM39AQ9NV64 488 aa11.69□□□□□ -0.54
NEDD9-203ENST00000397378 LRRC37A2A6NM11 1700 aa11.69□□□□□ -0.54
NEDD9-203ENST00000397378 REV3LO60673 3130 aa11.68□□□□□ -0.54
NEDD9-203ENST00000397378 KIAA0355O15063 1070 aa11.68□□□□□ -0.54
NEDD9-203ENST00000397378 CAP2P40123 477 aa11.68□□□□□ -0.54
NEDD9-203ENST00000397378 DZIP1Q86YF9 867 aaKnown RBP11.68□□□□□ -0.54
NEDD9-203ENST00000397378 NPLOC4Q8TAT6 608 aa11.68□□□□□ -0.54
NEDD9-203ENST00000397378 GTF3C2Q8WUA4 911 aaPredicted RBP11.68□□□□□ -0.54
NEDD9-203ENST00000397378 MSRAQ9UJ68 235 aa11.68□□□□□ -0.54
NEDD9-203ENST00000397378 IVNS1ABPQ9Y6Y0 642 aa11.68□□□□□ -0.54
NEDD9-203ENST00000397378 CDK5RAP2Q96SN8 1893 aa11.68□□□□□ -0.54
NEDD9-203ENST00000397378 MROH7-TTC4A0A0A0MT08 1334 aa11.67□□□□□ -0.54
NEDD9-203ENST00000397378 GPR75-ASB3A0A0A6YYF3 556 aa11.67□□□□□ -0.54
NEDD9-203ENST00000397378 SLC15A5A6NIM6 579 aa11.67□□□□□ -0.54
NEDD9-203ENST00000397378 SMIM22K7EJ46 135 aa11.67□□□□□ -0.54
NEDD9-203ENST00000397378 MAP4K4O95819 1239 aaPredicted RBP11.67□□□□□ -0.54
NEDD9-203ENST00000397378 PTPREP23469 700 aa11.67□□□□□ -0.54
NEDD9-203ENST00000397378 IL15P40933 162 aaPredicted RBP11.67□□□□□ -0.54
NEDD9-203ENST00000397378 BTDP43251 543 aa11.67□□□□□ -0.54
NEDD9-203ENST00000397378 BACE1P56817 501 aa11.67□□□□□ -0.54
NEDD9-203ENST00000397378 RHBDL3P58872 404 aa11.67□□□□□ -0.54
NEDD9-203ENST00000397378 CCNA1P78396 465 aa11.67□□□□□ -0.54
NEDD9-203ENST00000397378 LRRC41Q15345 812 aa11.67□□□□□ -0.54
NEDD9-203ENST00000397378 SPTY2D1Q68D10 685 aaPredicted RBP11.67□□□□□ -0.54
NEDD9-203ENST00000397378 CCDC102BQ68D86 513 aa11.67□□□□□ -0.54
NEDD9-203ENST00000397378 SIL1Q9H173 461 aa11.67□□□□□ -0.54
NEDD9-203ENST00000397378 GBF1Q92538 1859 aa11.67□□□□□ -0.54
NEDD9-203ENST00000397378 SIPA1L1O43166 1804 aa11.67□□□□□ -0.54
NEDD9-203ENST00000397378 ZNF521Q96K83 1311 aa11.66□□□□□ -0.54
NEDD9-203ENST00000397378 FOCADQ5VW36 1801 aa11.66□□□□□ -0.54
NEDD9-203ENST00000397378 SEPT4O43236 478 aa11.66□□□□□ -0.54
NEDD9-203ENST00000397378 RASGRF1Q13972 1273 aa11.66□□□□□ -0.54
NEDD9-203ENST00000397378 RRP1BQ14684 758 aaKnown RBP11.66□□□□□ -0.54
NEDD9-203ENST00000397378 RAB30Q15771 203 aa11.66□□□□□ -0.54
NEDD9-203ENST00000397378 CCDC174Q6PII3 467 aa11.66□□□□□ -0.54
NEDD9-203ENST00000397378 SLC44A5Q8NCS7 719 aa11.66□□□□□ -0.54
NEDD9-203ENST00000397378 KHSRPQ92945 711 aaKnown RBP eCLIP11.66□□□□□ -0.547e-7■□□□□ 10.6
NEDD9-203ENST00000397378 NKX2-4Q9H2Z4 354 aa11.66□□□□□ -0.54
NEDD9-203ENST00000397378 SLC28A3Q9HAS3 691 aa11.66□□□□□ -0.54
NEDD9-203ENST00000397378 ABCF2Q9UG63 623 aa11.66□□□□□ -0.54
NEDD9-203ENST00000397378 C19orf81C9J6K1 198 aa11.65□□□□□ -0.54
NEDD9-203ENST00000397378 ERC2O15083 957 aa11.65□□□□□ -0.54
NEDD9-203ENST00000397378 HOXC6P09630 235 aa11.65□□□□□ -0.54
NEDD9-203ENST00000397378 ADORA1P30542 326 aa11.65□□□□□ -0.54
NEDD9-203ENST00000397378 FAM47AQ5JRC9 791 aa11.65□□□□□ -0.54
NEDD9-203ENST00000397378 DPP9Q86TI2 863 aa11.65□□□□□ -0.54
NEDD9-203ENST00000397378 SSH1Q8WYL5 1049 aa11.65□□□□□ -0.54
NEDD9-203ENST00000397378 UIMC1Q96RL1 719 aa11.65□□□□□ -0.54
NEDD9-203ENST00000397378 WDR18Q9BV38 432 aa11.65□□□□□ -0.54
NEDD9-203ENST00000397378 RABGAP1Q9Y3P9 1069 aa11.65□□□□□ -0.54
NEDD9-203ENST00000397378 USP17L10C9JJH3 530 aa11.64□□□□□ -0.55
NEDD9-203ENST00000397378 APBB1O00213 710 aa11.64□□□□□ -0.55
NEDD9-203ENST00000397378 ASNSP08243 561 aa11.64□□□□□ -0.55
NEDD9-203ENST00000397378 UBTFL1P0CB47 393 aaPredicted RBP11.64□□□□□ -0.55
NEDD9-203ENST00000397378 NHLH1Q02575 133 aa11.64□□□□□ -0.55
NEDD9-203ENST00000397378 MECOMQ03112 1051 aa11.64□□□□□ -0.55
NEDD9-203ENST00000397378 PPIGQ13427 754 aaKnown RBP eCLIP11.64□□□□□ -0.55
NEDD9-203ENST00000397378 GRB14Q14449 540 aa11.64□□□□□ -0.55
NEDD9-203ENST00000397378 TMEM240Q5SV17 173 aa11.64□□□□□ -0.55
NEDD9-203ENST00000397378 ERICH6Q7L0X2 663 aa11.64□□□□□ -0.55
NEDD9-203ENST00000397378 ZNF384Q8TF68 577 aa11.64□□□□□ -0.55
NEDD9-203ENST00000397378 HERVK_113Q902F9 699 aa11.64□□□□□ -0.55
NEDD9-203ENST00000397378 COPRSQ9NQ92 184 aa11.64□□□□□ -0.55
NEDD9-203ENST00000397378 HERC5Q9UII4 1024 aaKnown RBP11.64□□□□□ -0.55
NEDD9-203ENST00000397378 PHF24Q9UPV7 400 aa11.64□□□□□ -0.55
NEDD9-203ENST00000397378 HDAC5Q9UQL6 1122 aa11.64□□□□□ -0.55
NEDD9-203ENST00000397378 CHD9Q3L8U1 2897 aa11.63□□□□□ -0.55
NEDD9-203ENST00000397378 DCDC2CA8MYV0 355 aa11.63□□□□□ -0.55
NEDD9-203ENST00000397378 PRR33A8MZF0 331 aa11.63□□□□□ -0.55
NEDD9-203ENST00000397378 CNMDO75829 334 aa11.63□□□□□ -0.55
NEDD9-203ENST00000397378 TIMP1P01033 207 aa11.63□□□□□ -0.55
NEDD9-203ENST00000397378 LDHCP07864 332 aa11.63□□□□□ -0.55
NEDD9-203ENST00000397378 TIMM10P62072 90 aa11.63□□□□□ -0.55
NEDD9-203ENST00000397378 FAAP100Q0VG06 881 aa11.63□□□□□ -0.55
NEDD9-203ENST00000397378 PRAMEF19Q5SWL8 479 aa11.63□□□□□ -0.55
NEDD9-203ENST00000397378 PA2G4Q9UQ80 394 aaKnown RBP11.63□□□□□ -0.55
NEDD9-203ENST00000397378 MYO5AQ9Y4I1 1855 aaKnown RBP11.62□□□□□ -0.55
NEDD9-203ENST00000397378 A0A1W2PQ45 241 aaPredicted RBP11.62□□□□□ -0.55
NEDD9-203ENST00000397378 A0A1W2PQY0 241 aa11.62□□□□□ -0.55
NEDD9-203ENST00000397378 TLL1O43897 1013 aa11.62□□□□□ -0.55
NEDD9-203ENST00000397378 ACRP10323 421 aa11.62□□□□□ -0.55
NEDD9-203ENST00000397378 GSTO1P78417 241 aa11.62□□□□□ -0.55
NEDD9-203ENST00000397378 MVPQ14764 893 aaKnown RBP11.62□□□□□ -0.55
NEDD9-203ENST00000397378 ALDH1L2Q3SY69 923 aa11.62□□□□□ -0.55
NEDD9-203ENST00000397378 RASIP1Q5U651 963 aa11.62□□□□□ -0.55
NEDD9-203ENST00000397378 PPP2R2DQ66LE6 453 aa11.62□□□□□ -0.55
NEDD9-203ENST00000397378 OLFML2BQ68BL8 750 aa11.62□□□□□ -0.55
NEDD9-203ENST00000397378 MFSD5Q6N075 450 aa11.62□□□□□ -0.55
NEDD9-203ENST00000397378 PSRC1Q6PGN9 363 aaPredicted RBP11.62□□□□□ -0.55
NEDD9-203ENST00000397378 ZNF365Q70YC5 407 aa11.62□□□□□ -0.55
NEDD9-203ENST00000397378 RNF180Q86T96 592 aa11.62□□□□□ -0.55
NEDD9-203ENST00000397378 XAGE2Q96GT9 111 aa11.62□□□□□ -0.55
NEDD9-203ENST00000397378 XPNPEP3Q9NQH7 507 aa11.62□□□□□ -0.55
NEDD9-203ENST00000397378 AKAP2Q9Y2D5 859 aa11.62□□□□□ -0.55
NEDD9-203ENST00000397378 YBX2Q9Y2T7 364 aaKnown RBP11.62□□□□□ -0.55
NEDD9-203ENST00000397378 ZNF236Q9UL36 1845 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms