RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 C12orf60Q5U649 245 aa16.05■□□□□ 0.16
SNCA-204ENST00000394989 ZNF804AQ7Z570 1209 aa16.05■□□□□ 0.16
SNCA-204ENST00000394989 METTL16Q86W50 562 aaKnown RBP16.05■□□□□ 0.16
SNCA-204ENST00000394989 DRC7Q8IY82 874 aa16.05■□□□□ 0.16
SNCA-204ENST00000394989 SRBD1Q8N5C6 995 aaKnown RBP16.05■□□□□ 0.16
SNCA-204ENST00000394989 MRFAP1L1Q96HT8 127 aa16.05■□□□□ 0.16
SNCA-204ENST00000394989 BPIFA3Q9BQP9 254 aa16.05■□□□□ 0.16
SNCA-204ENST00000394989 CABP5Q9NP86 173 aa16.05■□□□□ 0.16
SNCA-204ENST00000394989 NLRP12P59046 1061 aa16.05■□□□□ 0.16
SNCA-204ENST00000394989 CCDC94Q9BW85 323 aaPredicted RBP16.05■□□□□ 0.16
SNCA-204ENST00000394989 NAT10Q9H0A0 1025 aaKnown RBP16.05■□□□□ 0.16
SNCA-204ENST00000394989 CALM1P0DP23 149 aa16.04■□□□□ 0.16
SNCA-204ENST00000394989 CALM2P0DP24 149 aa16.04■□□□□ 0.16
SNCA-204ENST00000394989 CALM3P0DP25 149 aa16.04■□□□□ 0.16
SNCA-204ENST00000394989 PTPREP23469 700 aa16.04■□□□□ 0.16
SNCA-204ENST00000394989 TERF1P54274 439 aa16.04■□□□□ 0.16
SNCA-204ENST00000394989 PNOCQ13519 176 aa16.04■□□□□ 0.16
SNCA-204ENST00000394989 ISM2Q6H9L7 571 aa16.04■□□□□ 0.16
SNCA-204ENST00000394989 DYNLL2Q96FJ2 89 aa16.04■□□□□ 0.16
SNCA-204ENST00000394989 CDK5RAP2Q96SN8 1893 aa16.04■□□□□ 0.16
SNCA-204ENST00000394989 QTRT2Q9H974 415 aaKnown RBP16.04■□□□□ 0.16
SNCA-204ENST00000394989 IL17RBQ9NRM6 502 aa16.04■□□□□ 0.16
SNCA-204ENST00000394989 KCNH3Q9ULD8 1083 aa16.04■□□□□ 0.16
SNCA-204ENST00000394989 PDE4BQ07343 736 aa16.04■□□□□ 0.16
SNCA-204ENST00000394989 FOXP4Q8IVH2 680 aaPredicted RBP16.04■□□□□ 0.16
SNCA-204ENST00000394989 TSPY2A6NKD2 308 aa16.03■□□□□ 0.16
SNCA-204ENST00000394989 WNT7AO00755 349 aa16.03■□□□□ 0.16
SNCA-204ENST00000394989 AKAP17AQ02040 695 aaKnown RBP16.03■□□□□ 0.16
SNCA-204ENST00000394989 CD209Q9NNX6 404 aa16.03■□□□□ 0.16
SNCA-204ENST00000394989 NAV1Q8NEY1 1877 aa16.03■□□□□ 0.16
SNCA-204ENST00000394989 BAZ2BQ9UIF8 2168 aaKnown RBP16.03■□□□□ 0.16
SNCA-204ENST00000394989 UFL1O94874 794 aa16.03■□□□□ 0.16
SNCA-204ENST00000394989 TRIM37O94972 964 aa16.03■□□□□ 0.16
SNCA-204ENST00000394989 VEGFAP15692 232 aaPredicted RBP16.03■□□□□ 0.16
SNCA-204ENST00000394989 ZSCAN20P17040 1043 aaPredicted RBP16.03■□□□□ 0.16
SNCA-204ENST00000394989 ST5P78524 1137 aa16.03■□□□□ 0.16
SNCA-204ENST00000394989 NCAPHQ15003 741 aa16.03■□□□□ 0.16
SNCA-204ENST00000394989 NOM1Q5C9Z4 860 aaKnown RBP16.03■□□□□ 0.16
SNCA-204ENST00000394989 SLC27A3Q5K4L6 730 aa16.03■□□□□ 0.16
SNCA-204ENST00000394989 LTBP1Q14766 1721 aa16.03■□□□□ 0.16
SNCA-204ENST00000394989 FOXN1O15353 648 aa16.03■□□□□ 0.16
SNCA-204ENST00000394989 KRBA2Q6ZNG9 492 aa16.03■□□□□ 0.16
SNCA-204ENST00000394989 PROM2Q8N271 834 aa16.03■□□□□ 0.16
SNCA-204ENST00000394989 RTFDC1Q9BY42 306 aaPredicted RBP16.03■□□□□ 0.16
SNCA-204ENST00000394989 ROBO3Q96MS0 1386 aa16.03■□□□□ 0.16
SNCA-204ENST00000394989 POLRMTO00411 1230 aaKnown RBP16.02■□□□□ 0.16
SNCA-204ENST00000394989 ATP2B1P20020 1258 aa16.02■□□□□ 0.16
SNCA-204ENST00000394989 USP5P45974 858 aa16.02■□□□□ 0.16
SNCA-204ENST00000394989 PPP4CP60510 307 aa16.02■□□□□ 0.16
SNCA-204ENST00000394989 MDM2Q00987 491 aaPredicted RBP16.02■□□□□ 0.16
SNCA-204ENST00000394989 CACTINQ8WUQ7 758 aaKnown RBP16.02■□□□□ 0.16
SNCA-204ENST00000394989 TNFRSF25Q93038 417 aa16.02■□□□□ 0.16
SNCA-204ENST00000394989 IL1R1P14778 569 aa16.02■□□□□ 0.15
SNCA-204ENST00000394989 ZNF710Q8N1W2 664 aa16.02■□□□□ 0.15
SNCA-204ENST00000394989 POLLQ9UGP5 575 aa16.02■□□□□ 0.15
SNCA-204ENST00000394989 KRT2P35908 639 aa16.01■□□□□ 0.15
SNCA-204ENST00000394989 PLCD1P51178 756 aa16.01■□□□□ 0.15
SNCA-204ENST00000394989 TFAP4Q01664 338 aa16.01■□□□□ 0.15
SNCA-204ENST00000394989 ARID5BQ14865 1188 aa16.01■□□□□ 0.15
SNCA-204ENST00000394989 ZRSR1Q15695 479 aaKnown RBP16.01■□□□□ 0.15
SNCA-204ENST00000394989 TGFBRAP1Q8WUH2 860 aa16.01■□□□□ 0.15
SNCA-204ENST00000394989 HSD3B7Q9H2F3 369 aa16.01■□□□□ 0.15
SNCA-204ENST00000394989 SRPRBQ9Y5M8 271 aaKnown RBP16.01■□□□□ 0.15
SNCA-204ENST00000394989 ADAMTS3O15072 1205 aa16.01■□□□□ 0.15
SNCA-204ENST00000394989 XBP1P17861 261 aa16.01■□□□□ 0.15
SNCA-204ENST00000394989 USP49Q70CQ1 688 aa16.01■□□□□ 0.15
SNCA-204ENST00000394989 CTCFLQ8NI51 663 aaPredicted RBP16.01■□□□□ 0.15
SNCA-204ENST00000394989 LRRC37AA6NMS7 1700 aa16.01■□□□□ 0.15
SNCA-204ENST00000394989 DDX60LQ5H9U9 1706 aaKnown RBP16.01■□□□□ 0.15
SNCA-204ENST00000394989 HOXA10P31260 410 aaPredicted RBP16.01■□□□□ 0.15
SNCA-204ENST00000394989 SLC44A5Q8NCS7 719 aa16.01■□□□□ 0.15
SNCA-204ENST00000394989 CNNM3Q8NE01 707 aa16.01■□□□□ 0.15
SNCA-204ENST00000394989 RBM17Q96I25 401 aaKnown RBP16.01■□□□□ 0.15
SNCA-204ENST00000394989 GGA1Q9UJY5 639 aa16.01■□□□□ 0.15
SNCA-204ENST00000394989 BMP6P22004 513 aa16■□□□□ 0.15
SNCA-204ENST00000394989 ATP2B4P23634 1241 aa16■□□□□ 0.15
SNCA-204ENST00000394989 GSTO1P78417 241 aa16■□□□□ 0.15
SNCA-204ENST00000394989 ZNF579Q8NAF0 562 aaKnown RBP16■□□□□ 0.15
SNCA-204ENST00000394989 KLRG2A4D1S0 409 aaPredicted RBP16■□□□□ 0.15
SNCA-204ENST00000394989 MTERF4Q7Z6M4 381 aaKnown RBP16■□□□□ 0.15
SNCA-204ENST00000394989 TBC1D16Q8TBP0 767 aa16■□□□□ 0.15
SNCA-204ENST00000394989 CSRNP2Q9H175 543 aa16■□□□□ 0.15
SNCA-204ENST00000394989 PCDHA5Q9Y5H7 936 aa16■□□□□ 0.15
SNCA-204ENST00000394989 USP17L3A6NCW0 530 aa15.99■□□□□ 0.15
SNCA-204ENST00000394989 USP17L4A6NCW7 530 aa15.99■□□□□ 0.15
SNCA-204ENST00000394989 BAG3O95817 575 aa15.99■□□□□ 0.15
SNCA-204ENST00000394989 USP17L1Q7RTZ2 530 aa15.99■□□□□ 0.15
SNCA-204ENST00000394989 KRT27Q7Z3Y8 459 aa15.99■□□□□ 0.15
SNCA-204ENST00000394989 MAPKAPK5Q8IW41 473 aa15.99■□□□□ 0.15
SNCA-204ENST00000394989 ANKRD31Q8N7Z5 1873 aa15.99■□□□□ 0.15
SNCA-204ENST00000394989 POLR2DO15514 142 aaKnown RBP15.99■□□□□ 0.15
SNCA-204ENST00000394989 DMTNQ08495 405 aa15.99■□□□□ 0.15
SNCA-204ENST00000394989 BBOX1O75936 387 aa15.99■□□□□ 0.15
SNCA-204ENST00000394989 SCG2P13521 617 aa15.99■□□□□ 0.15
SNCA-204ENST00000394989 BTDP43251 543 aa15.99■□□□□ 0.15
SNCA-204ENST00000394989 DGKHQ86XP1 1220 aa15.99■□□□□ 0.15
SNCA-204ENST00000394989 ELOA2Q8IYF1 753 aaPredicted RBP15.99■□□□□ 0.15
SNCA-204ENST00000394989 STAG2Q8N3U4 1231 aa15.99■□□□□ 0.15
SNCA-204ENST00000394989 MYRIPQ8NFW9 859 aa15.99■□□□□ 0.15
SNCA-204ENST00000394989 SAP30BPQ9UHR5 308 aaKnown RBP15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms