RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 ATP2A1O14983 1001 aa8.32□□□□□ -1.08
LIMA1-202ENST00000394943 CELF2O95319 508 aaKnown RBP8.32□□□□□ -1.08
LIMA1-202ENST00000394943 TBC1D32Q96NH3 1257 aa8.32□□□□□ -1.08
LIMA1-202ENST00000394943 VEZTQ9HBM0 779 aa8.32□□□□□ -1.08
LIMA1-202ENST00000394943 SRCAPQ6ZRS2 3230 aa8.32□□□□□ -1.08
LIMA1-202ENST00000394943 USP17L5A8MUK1 530 aa8.32□□□□□ -1.08
LIMA1-202ENST00000394943 ZNF213O14771 459 aa8.32□□□□□ -1.08
LIMA1-202ENST00000394943 RBM26Q5T8P6 1007 aaKnown RBP8.32□□□□□ -1.08
LIMA1-202ENST00000394943 AMOTL1Q8IY63 956 aa8.32□□□□□ -1.08
LIMA1-202ENST00000394943 FAM177A1Q8N128 213 aaPredicted RBP8.32□□□□□ -1.08
LIMA1-202ENST00000394943 LPAR1Q92633 364 aa8.32□□□□□ -1.08
LIMA1-202ENST00000394943 TMEM87BQ96K49 555 aa8.32□□□□□ -1.08
LIMA1-202ENST00000394943 KANSL2Q9H9L4 492 aa8.32□□□□□ -1.08
LIMA1-202ENST00000394943 CERKLQ49MI3 558 aaPredicted RBP8.32□□□□□ -1.08
LIMA1-202ENST00000394943 GTF3C2Q8WUA4 911 aaPredicted RBP8.32□□□□□ -1.08
LIMA1-202ENST00000394943 TAF6LQ9Y6J9 622 aa8.32□□□□□ -1.08
LIMA1-202ENST00000394943 AKR1B1P15121 316 aa8.31□□□□□ -1.08
LIMA1-202ENST00000394943 RASEFQ8IZ41 740 aa8.31□□□□□ -1.08
LIMA1-202ENST00000394943 AS3MTQ9HBK9 375 aa8.31□□□□□ -1.08
LIMA1-202ENST00000394943 MANSC4A6NHS7 340 aaPredicted RBP8.31□□□□□ -1.08
LIMA1-202ENST00000394943 SH2B2O14492 632 aaPredicted RBP8.31□□□□□ -1.08
LIMA1-202ENST00000394943 SEC24BO95487 1268 aa8.31□□□□□ -1.08
LIMA1-202ENST00000394943 TDO2P48775 406 aa8.31□□□□□ -1.08
LIMA1-202ENST00000394943 DYNLL2Q96FJ2 89 aa8.31□□□□□ -1.08
LIMA1-202ENST00000394943 CYP2D7A0A087X1C5 515 aa8.31□□□□□ -1.08
LIMA1-202ENST00000394943 POLR3DP05423 398 aaPredicted RBP8.31□□□□□ -1.08
LIMA1-202ENST00000394943 GTF2A2P52657 109 aa8.31□□□□□ -1.08
LIMA1-202ENST00000394943 BACE1P56817 501 aa8.31□□□□□ -1.08
LIMA1-202ENST00000394943 PICALMQ13492 652 aa8.31□□□□□ -1.08
LIMA1-202ENST00000394943 ABCB5Q2M3G0 1257 aa8.31□□□□□ -1.08
LIMA1-202ENST00000394943 RNF20Q5VTR2 975 aa8.31□□□□□ -1.08
LIMA1-202ENST00000394943 CYB5R4Q7L1T6 521 aa8.31□□□□□ -1.08
LIMA1-202ENST00000394943 REPS2Q8NFH8 660 aa8.31□□□□□ -1.08
LIMA1-202ENST00000394943 INPP5BP32019 993 aa8.3□□□□□ -1.08
LIMA1-202ENST00000394943 USP14P54578 494 aa8.3□□□□□ -1.08
LIMA1-202ENST00000394943 FMR1Q06787 632 aaKnown RBP eCLIP8.3□□□□□ -1.08
LIMA1-202ENST00000394943 TCP10Q12799 353 aa8.3□□□□□ -1.08
LIMA1-202ENST00000394943 PPP2R5BQ15173 497 aa8.3□□□□□ -1.08
LIMA1-202ENST00000394943 USP17L2Q6R6M4 530 aa8.3□□□□□ -1.08
LIMA1-202ENST00000394943 ZNF280CQ8ND82 737 aa8.3□□□□□ -1.08
LIMA1-202ENST00000394943 NCOA7Q8NI08 942 aa8.3□□□□□ -1.08
LIMA1-202ENST00000394943 DCAF4Q8WV16 495 aa8.3□□□□□ -1.08
LIMA1-202ENST00000394943 ESR2Q92731 530 aa8.3□□□□□ -1.08
LIMA1-202ENST00000394943 LY9Q9HBG7 655 aa8.3□□□□□ -1.08
LIMA1-202ENST00000394943 SAP30BPQ9UHR5 308 aaKnown RBP8.3□□□□□ -1.08
LIMA1-202ENST00000394943 MFSD6Q6ZSS7 791 aa8.3□□□□□ -1.08
LIMA1-202ENST00000394943 WRNIP1Q96S55 665 aa8.3□□□□□ -1.08
LIMA1-202ENST00000394943 EMILIN3Q9NT22 766 aa8.3□□□□□ -1.08
LIMA1-202ENST00000394943 ZSWIM5Q9P217 1185 aa8.3□□□□□ -1.08
LIMA1-202ENST00000394943 MORF4L1Q9UBU8 362 aa8.3□□□□□ -1.08
LIMA1-202ENST00000394943 A0A1W2PRG0 241 aa8.3□□□□□ -1.08
LIMA1-202ENST00000394943 DDAH1O94760 285 aa8.3□□□□□ -1.08
LIMA1-202ENST00000394943 TTLL1O95922 423 aa8.3□□□□□ -1.08
LIMA1-202ENST00000394943 FDX1P10109 184 aa8.3□□□□□ -1.08
LIMA1-202ENST00000394943 RPS6KB1P23443 525 aa8.3□□□□□ -1.08
LIMA1-202ENST00000394943 CTDSPL2Q05D32 466 aa8.3□□□□□ -1.08
LIMA1-202ENST00000394943 DLK2Q6UY11 383 aa8.3□□□□□ -1.08
LIMA1-202ENST00000394943 TMTC2Q8N394 836 aa8.3□□□□□ -1.08
LIMA1-202ENST00000394943 AGTPBP1Q9UPW5 1226 aa8.3□□□□□ -1.08
LIMA1-202ENST00000394943 FRMPD3Q5JV73 1810 aa8.29□□□□□ -1.08
LIMA1-202ENST00000394943 DHX32Q7L7V1 743 aaKnown RBP8.29□□□□□ -1.08
LIMA1-202ENST00000394943 ZSCAN10Q96SZ4 725 aaPredicted RBP8.29□□□□□ -1.08
LIMA1-202ENST00000394943 SH2D4AQ9H788 454 aa8.29□□□□□ -1.08
LIMA1-202ENST00000394943 VCPKMTQ9H867 229 aa8.29□□□□□ -1.08
LIMA1-202ENST00000394943 WDR46O15213 610 aaKnown RBP8.29□□□□□ -1.08
LIMA1-202ENST00000394943 TOP1P11387 765 aaKnown RBP8.29□□□□□ -1.08
LIMA1-202ENST00000394943 ECE1P42892 770 aa8.29□□□□□ -1.08
LIMA1-202ENST00000394943 NOGQ13253 232 aa8.29□□□□□ -1.08
LIMA1-202ENST00000394943 POTEEQ6S8J3 1075 aa8.29□□□□□ -1.08
LIMA1-202ENST00000394943 RUFY3Q7L099 469 aa8.29□□□□□ -1.08
LIMA1-202ENST00000394943 SLC44A5Q8NCS7 719 aa8.29□□□□□ -1.08
LIMA1-202ENST00000394943 OPTNQ96CV9 577 aa8.29□□□□□ -1.08
LIMA1-202ENST00000394943 ANGEL1Q9UNK9 670 aaKnown RBP8.29□□□□□ -1.08
LIMA1-202ENST00000394943 CETPP11597 493 aa8.28□□□□□ -1.08
LIMA1-202ENST00000394943 OAZ1P54368 228 aa8.28□□□□□ -1.08
LIMA1-202ENST00000394943 KIAA1211Q6ZU35 1233 aa8.28□□□□□ -1.08
LIMA1-202ENST00000394943 FASTKD5Q7L8L6 764 aaKnown RBP8.28□□□□□ -1.08
LIMA1-202ENST00000394943 SAMD3Q8N6K7 520 aa8.28□□□□□ -1.08
LIMA1-202ENST00000394943 ENAHQ8N8S7 591 aaPredicted RBP8.28□□□□□ -1.08
LIMA1-202ENST00000394943 CLMNQ96JQ2 1002 aa8.28□□□□□ -1.08
LIMA1-202ENST00000394943 CLEC11AQ9Y240 323 aa8.28□□□□□ -1.08
LIMA1-202ENST00000394943 MYH15Q9Y2K3 1946 aa8.28□□□□□ -1.08
LIMA1-202ENST00000394943 WDR33Q9C0J8 1336 aaKnown RBP8.28□□□□□ -1.08
LIMA1-202ENST00000394943 PALM3A6NDB9 673 aaPredicted RBP8.28□□□□□ -1.08
LIMA1-202ENST00000394943 PSMA5P28066 241 aa8.28□□□□□ -1.08
LIMA1-202ENST00000394943 FUT2Q10981 343 aa8.28□□□□□ -1.08
LIMA1-202ENST00000394943 TROAPQ12815 778 aa8.28□□□□□ -1.08
LIMA1-202ENST00000394943 SNAPC2Q13487 334 aa8.28□□□□□ -1.08
LIMA1-202ENST00000394943 GRM4Q14833 912 aa8.28□□□□□ -1.08
LIMA1-202ENST00000394943 ADCK5Q3MIX3 580 aa8.28□□□□□ -1.08
LIMA1-202ENST00000394943 KIAA1755Q5JYT7 1200 aa8.28□□□□□ -1.08
LIMA1-202ENST00000394943 CATSPERGQ6ZRH7 1159 aa8.28□□□□□ -1.08
LIMA1-202ENST00000394943 CEP95Q96GE4 821 aa8.28□□□□□ -1.08
LIMA1-202ENST00000394943 PLXNA1Q9UIW2 1896 aa8.28□□□□□ -1.08
LIMA1-202ENST00000394943 GH2P01242 217 aa8.28□□□□□ -1.08
LIMA1-202ENST00000394943 TOB2Q14106 344 aaPredicted RBP8.28□□□□□ -1.08
LIMA1-202ENST00000394943 NEK1Q96PY6 1258 aa8.28□□□□□ -1.08
LIMA1-202ENST00000394943 PTPN18Q99952 460 aa8.28□□□□□ -1.08
LIMA1-202ENST00000394943 CSADQ9Y600 493 aa8.28□□□□□ -1.08
LIMA1-202ENST00000394943 MYH6P13533 1939 aa8.27□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms