RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 NELFBQ8WX92 580 aa14.15□□□□□ -0.14
CCDC88C-204ENST00000389857 V9GY48 417 aaPredicted RBP14.15□□□□□ -0.14
CCDC88C-204ENST00000389857 SLC1A4P43007 532 aa14.15□□□□□ -0.14
CCDC88C-204ENST00000389857 LRWD1Q9UFC0 647 aa14.15□□□□□ -0.14
CCDC88C-204ENST00000389857 GINS2Q9Y248 185 aa14.15□□□□□ -0.14
CCDC88C-204ENST00000389857 STMN1P16949 149 aa14.15□□□□□ -0.14
CCDC88C-204ENST00000389857 HERC4Q5GLZ8 1057 aaPredicted RBP14.15□□□□□ -0.14
CCDC88C-204ENST00000389857 APPBP2Q92624 585 aa14.15□□□□□ -0.14
CCDC88C-204ENST00000389857 IWS1Q96ST2 819 aa14.15□□□□□ -0.14
CCDC88C-204ENST00000389857 TTLL3Q9Y4R7 772 aa14.15□□□□□ -0.14
CCDC88C-204ENST00000389857 MAN1A1P33908 653 aa14.15□□□□□ -0.14
CCDC88C-204ENST00000389857 RFC1P35251 1148 aaPredicted RBP14.15□□□□□ -0.14
CCDC88C-204ENST00000389857 POSTNQ15063 836 aa14.15□□□□□ -0.14
CCDC88C-204ENST00000389857 TNNI3KQ59H18 835 aa14.15□□□□□ -0.14
CCDC88C-204ENST00000389857 GRK7Q8WTQ7 553 aa14.15□□□□□ -0.14
CCDC88C-204ENST00000389857 FPGT-TNNI3KV9GXZ4 949 aa14.15□□□□□ -0.14
CCDC88C-204ENST00000389857 PDE6BP35913 854 aa14.15□□□□□ -0.14
CCDC88C-204ENST00000389857 IRX3P78415 501 aaPredicted RBP14.15□□□□□ -0.14
CCDC88C-204ENST00000389857 KRT81Q14533 505 aa14.15□□□□□ -0.14
CCDC88C-204ENST00000389857 SND1Q7KZF4 910 aaKnown RBP eCLIP14.15□□□□□ -0.14
CCDC88C-204ENST00000389857 ZBTB9Q96C00 473 aa14.15□□□□□ -0.14
CCDC88C-204ENST00000389857 HAUS1Q96CS2 278 aa14.15□□□□□ -0.14
CCDC88C-204ENST00000389857 POLR3AO14802 1390 aaPredicted RBP14.15□□□□□ -0.14
CCDC88C-204ENST00000389857 PFDN6O15212 129 aa14.14□□□□□ -0.15
CCDC88C-204ENST00000389857 CCDC84Q86UT8 332 aaPredicted RBP14.14□□□□□ -0.15
CCDC88C-204ENST00000389857 ZNF277Q9NRM2 450 aaPredicted RBP14.14□□□□□ -0.15
CCDC88C-204ENST00000389857 STK32BQ9NY57 414 aa14.14□□□□□ -0.15
CCDC88C-204ENST00000389857 SLC5A4Q9NY91 659 aa14.14□□□□□ -0.15
CCDC88C-204ENST00000389857 MAPK8IP1Q9UQF2 711 aa14.14□□□□□ -0.15
CCDC88C-204ENST00000389857 RAPGEF6Q8TEU7 1601 aa14.14□□□□□ -0.15
CCDC88C-204ENST00000389857 TROVE2P10155 538 aaKnown RBP eCLIP14.14□□□□□ -0.15
CCDC88C-204ENST00000389857 ANKRD20A3Q5VUR7 823 aa14.14□□□□□ -0.15
CCDC88C-204ENST00000389857 LRRC59Q96AG4 307 aaKnown RBP14.14□□□□□ -0.15
CCDC88C-204ENST00000389857 NT5C3AQ9H0P0 336 aa14.14□□□□□ -0.15
CCDC88C-204ENST00000389857 TRPC6Q9Y210 931 aa14.14□□□□□ -0.15
CCDC88C-204ENST00000389857 NPATQ14207 1427 aa14.14□□□□□ -0.15
CCDC88C-204ENST00000389857 CD19P15391 556 aa14.14□□□□□ -0.15
CCDC88C-204ENST00000389857 KRT12Q99456 494 aa14.14□□□□□ -0.15
CCDC88C-204ENST00000389857 TXNDC9O14530 226 aa14.14□□□□□ -0.15
CCDC88C-204ENST00000389857 OATP04181 439 aa14.14□□□□□ -0.15
CCDC88C-204ENST00000389857 CLNS1AP54105 237 aaKnown RBP14.14□□□□□ -0.15
CCDC88C-204ENST00000389857 KLHL7Q8IXQ5 586 aa14.14□□□□□ -0.15
CCDC88C-204ENST00000389857 EYA2O00167 538 aa14.14□□□□□ -0.15
CCDC88C-204ENST00000389857 MGEA5O60502 916 aa14.14□□□□□ -0.15
CCDC88C-204ENST00000389857 USH1GQ495M9 461 aa14.14□□□□□ -0.15
CCDC88C-204ENST00000389857 VPS37BQ9H9H4 285 aa14.14□□□□□ -0.15
CCDC88C-204ENST00000389857 NR1I2O75469 434 aa14.14□□□□□ -0.15
CCDC88C-204ENST00000389857 PALM2Q8IXS6 379 aa14.14□□□□□ -0.15
CCDC88C-204ENST00000389857 MED10Q9BTT4 135 aa14.14□□□□□ -0.15
CCDC88C-204ENST00000389857 CCDC38Q502W7 563 aa14.13□□□□□ -0.15
CCDC88C-204ENST00000389857 CABP7Q86V35 215 aa14.13□□□□□ -0.15
CCDC88C-204ENST00000389857 XAGE2Q96GT9 111 aa14.13□□□□□ -0.15
CCDC88C-204ENST00000389857 METTL22Q9BUU2 404 aaPredicted RBP14.13□□□□□ -0.15
CCDC88C-204ENST00000389857 DDX21Q9NR30 783 aaKnown RBP eCLIP14.13□□□□□ -0.15
CCDC88C-204ENST00000389857 MYO1AQ9UBC5 1043 aa14.13□□□□□ -0.15
CCDC88C-204ENST00000389857 BIVM-ERCC5R4GMW8 1640 aa14.13□□□□□ -0.15
CCDC88C-204ENST00000389857 SETSIPP0DME0 302 aa14.13□□□□□ -0.15
CCDC88C-204ENST00000389857 FBLN1P23142 703 aa14.13□□□□□ -0.15
CCDC88C-204ENST00000389857 AMFRQ9UKV5 643 aa14.13□□□□□ -0.15
CCDC88C-204ENST00000389857 ZNF202O95125 648 aa14.13□□□□□ -0.15
CCDC88C-204ENST00000389857 MAGEA1P43355 309 aa14.13□□□□□ -0.15
CCDC88C-204ENST00000389857 DDX27Q96GQ7 796 aaKnown RBP14.13□□□□□ -0.15
CCDC88C-204ENST00000389857 AATFQ9NY61 560 aaKnown RBP eCLIP14.13□□□□□ -0.15
CCDC88C-204ENST00000389857 BEGAINQ9BUH8 593 aa14.13□□□□□ -0.15
CCDC88C-204ENST00000389857 TBC1D7Q9P0N9 293 aa14.13□□□□□ -0.15
CCDC88C-204ENST00000389857 H0YIN7 160 aa14.13□□□□□ -0.15
CCDC88C-204ENST00000389857 TNNI1P19237 187 aa14.13□□□□□ -0.15
CCDC88C-204ENST00000389857 MCTP2Q6DN12 878 aa14.13□□□□□ -0.15
CCDC88C-204ENST00000389857 NLRX1Q86UT6 975 aa14.13□□□□□ -0.15
CCDC88C-204ENST00000389857 SPC25Q9HBM1 224 aa14.13□□□□□ -0.15
CCDC88C-204ENST00000389857 MROH5Q6ZUA9 1318 aa14.12□□□□□ -0.15
CCDC88C-204ENST00000389857 GPAA1O43292 621 aa14.12□□□□□ -0.15
CCDC88C-204ENST00000389857 RNF40O75150 1001 aa14.12□□□□□ -0.15
CCDC88C-204ENST00000389857 ZYXQ15942 572 aaKnown RBP14.12□□□□□ -0.15
CCDC88C-204ENST00000389857 C8orf34Q49A92 452 aa14.12□□□□□ -0.15
CCDC88C-204ENST00000389857 DPP8Q6V1X1 898 aaPredicted RBP14.12□□□□□ -0.15
CCDC88C-204ENST00000389857 TRIM50Q86XT4 487 aa14.12□□□□□ -0.15
CCDC88C-204ENST00000389857 CABS1Q96KC9 395 aa14.12□□□□□ -0.15
CCDC88C-204ENST00000389857 RAB20Q9NX57 234 aa14.12□□□□□ -0.15
CCDC88C-204ENST00000389857 TRIM56Q9BRZ2 755 aaKnown RBP14.12□□□□□ -0.15
CCDC88C-204ENST00000389857 ZNF408Q9H9D4 720 aa14.12□□□□□ -0.15
CCDC88C-204ENST00000389857 UNC13AQ9UPW8 1703 aa14.12□□□□□ -0.15
CCDC88C-204ENST00000389857 GOLGA8CPA6NN73 597 aa14.12□□□□□ -0.15
CCDC88C-204ENST00000389857 ARHGAP6O43182 974 aa14.12□□□□□ -0.15
CCDC88C-204ENST00000389857 STAM2O75886 525 aa14.12□□□□□ -0.15
CCDC88C-204ENST00000389857 ZNF75DP51815 510 aa14.12□□□□□ -0.15
CCDC88C-204ENST00000389857 TCIRG1Q13488 830 aa14.12□□□□□ -0.15
CCDC88C-204ENST00000389857 LONRF2Q1L5Z9 754 aa14.12□□□□□ -0.15
CCDC88C-204ENST00000389857 PDZD4Q76G19 769 aaPredicted RBP14.12□□□□□ -0.15
CCDC88C-204ENST00000389857 BABAM1Q9NWV8 329 aa14.12□□□□□ -0.15
CCDC88C-204ENST00000389857 ATF7P17544 494 aaPredicted RBP14.12□□□□□ -0.15
CCDC88C-204ENST00000389857 PPP2R5EQ16537 467 aa14.12□□□□□ -0.15
CCDC88C-204ENST00000389857 ANKFY1Q9P2R3 1169 aa14.12□□□□□ -0.15
CCDC88C-204ENST00000389857 VAMP4O75379 141 aa14.12□□□□□ -0.15
CCDC88C-204ENST00000389857 RPGRIP1Q96KN7 1286 aa14.12□□□□□ -0.15
CCDC88C-204ENST00000389857 DYMQ7RTS9 669 aa14.11□□□□□ -0.15
CCDC88C-204ENST00000389857 SH3TC1Q8TE82 1336 aa14.11□□□□□ -0.15
CCDC88C-204ENST00000389857 DIS3L2Q8IYB7 885 aaKnown RBP14.11□□□□□ -0.15
CCDC88C-204ENST00000389857 CCNL1Q9UK58 526 aaPredicted RBP14.11□□□□□ -0.15
CCDC88C-204ENST00000389857 HADHQ16836 314 aaKnown RBP14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms