RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 SLC44A5Q8NCS7 719 aa29.09■■■□□ 2.25
SHOX2-201ENST00000389589 ENGASEQ8NFI3 743 aa29.09■■■□□ 2.25
SHOX2-201ENST00000389589 C7orf43Q8WVR3 580 aa29.09■■■□□ 2.25
SHOX2-201ENST00000389589 TEKT1Q969V4 418 aa29.09■■■□□ 2.25
SHOX2-201ENST00000389589 V9GY48 417 aaPredicted RBP29.09■■■□□ 2.25
SHOX2-201ENST00000389589 CNTNAP5Q8WYK1 1306 aa29.09■■■□□ 2.25
SHOX2-201ENST00000389589 BTBD18B2RXH4 712 aa29.09■■■□□ 2.25
SHOX2-201ENST00000389589 PPP6R2O75170 966 aa29.09■■■□□ 2.25
SHOX2-201ENST00000389589 STRIP1Q5VSL9 837 aa29.09■■■□□ 2.25
SHOX2-201ENST00000389589 PNMA1Q8ND90 353 aa29.09■■■□□ 2.25
SHOX2-201ENST00000389589 DBNDD1Q9H9R9 158 aa29.09■■■□□ 2.25
SHOX2-201ENST00000389589 ZNF646O15015 1829 aaPredicted RBP29.09■■■□□ 2.25
SHOX2-201ENST00000389589 KINO60870 393 aaKnown RBP29.08■■■□□ 2.25
SHOX2-201ENST00000389589 SNW1Q13573 536 aaKnown RBP29.08■■■□□ 2.25
SHOX2-201ENST00000389589 MRIQ9BWK5 157 aa29.08■■■□□ 2.25
SHOX2-201ENST00000389589 SCN9AQ15858 1988 aa29.08■■■□□ 2.25
SHOX2-201ENST00000389589 SRBD1Q8N5C6 995 aaKnown RBP29.08■■■□□ 2.25
SHOX2-201ENST00000389589 SUPT20HQ8NEM7 779 aa29.08■■■□□ 2.25
SHOX2-201ENST00000389589 SNED1Q8TER0 1413 aa29.07■■■□□ 2.24
SHOX2-201ENST00000389589 USP17L3A6NCW0 530 aa29.07■■■□□ 2.24
SHOX2-201ENST00000389589 USP17L4A6NCW7 530 aa29.07■■■□□ 2.24
SHOX2-201ENST00000389589 RILPL1Q5EBL4 403 aa29.07■■■□□ 2.24
SHOX2-201ENST00000389589 USP17L1Q7RTZ2 530 aa29.07■■■□□ 2.24
SHOX2-201ENST00000389589 NEDD1Q8NHV4 660 aa29.07■■■□□ 2.24
SHOX2-201ENST00000389589 MXD3Q9BW11 206 aa29.07■■■□□ 2.24
SHOX2-201ENST00000389589 C10orf71Q711Q0 1435 aa29.07■■■□□ 2.24
SHOX2-201ENST00000389589 ADAMTSL1Q8N6G6 1762 aa29.06■■■□□ 2.24
SHOX2-201ENST00000389589 GNAQP50148 359 aa29.06■■■□□ 2.24
SHOX2-201ENST00000389589 GRIPAP1Q4V328 841 aa29.06■■■□□ 2.24
SHOX2-201ENST00000389589 USP40Q9NVE5 1235 aa29.06■■■□□ 2.24
SHOX2-201ENST00000389589 ECE2O60344 883 aa29.06■■■□□ 2.24
SHOX2-201ENST00000389589 TYRO3Q06418 890 aa29.06■■■□□ 2.24
SHOX2-201ENST00000389589 PTPAQ15257 358 aa29.06■■■□□ 2.24
SHOX2-201ENST00000389589 CKAP2LQ8IYA6 745 aa29.06■■■□□ 2.24
SHOX2-201ENST00000389589 TRIM44Q96DX7 344 aaPredicted RBP29.06■■■□□ 2.24
SHOX2-201ENST00000389589 PDLIM2Q96JY6 352 aa29.06■■■□□ 2.24
SHOX2-201ENST00000389589 PHF20Q9BVI0 1012 aa29.06■■■□□ 2.24
SHOX2-201ENST00000389589 GRM4Q14833 912 aa29.05■■■□□ 2.24
SHOX2-201ENST00000389589 EIF4ENIF1Q9NRA8 985 aaKnown RBP29.05■■■□□ 2.24
SHOX2-201ENST00000389589 ZNF219Q9P2Y4 722 aaPredicted RBP29.05■■■□□ 2.24
SHOX2-201ENST00000389589 WDHD1O75717 1129 aaPredicted RBP29.05■■■□□ 2.24
SHOX2-201ENST00000389589 SCNN1DP51172 638 aa29.05■■■□□ 2.24
SHOX2-201ENST00000389589 HDLBPQ00341 1268 aaKnown RBP29.05■■■□□ 2.24
SHOX2-201ENST00000389589 FMR1NBQ8N0W7 255 aaPredicted RBP29.05■■■□□ 2.24
SHOX2-201ENST00000389589 CMA1P23946 247 aa29.04■■■□□ 2.24
SHOX2-201ENST00000389589 AXDND1Q5T1B0 1012 aaPredicted RBP29.04■■■□□ 2.24
SHOX2-201ENST00000389589 SASS6Q6UVJ0 657 aa29.04■■■□□ 2.24
SHOX2-201ENST00000389589 SLC16A10Q8TF71 515 aa29.04■■■□□ 2.24
SHOX2-201ENST00000389589 BRMS1Q9HCU9 246 aa29.04■■■□□ 2.24
SHOX2-201ENST00000389589 VPS54Q9P1Q0 977 aa29.04■■■□□ 2.24
SHOX2-201ENST00000389589 KRT2P35908 639 aa29.03■■■□□ 2.24
SHOX2-201ENST00000389589 PICALMQ13492 652 aa29.03■■■□□ 2.24
SHOX2-201ENST00000389589 CRKP46108 304 aa29.03■■■□□ 2.24
SHOX2-201ENST00000389589 KIAA2012Q0VF49 1180 aa29.03■■■□□ 2.24
SHOX2-201ENST00000389589 DACT2Q5SW24 774 aa29.03■■■□□ 2.24
SHOX2-201ENST00000389589 ZDHHC15Q96MV8 337 aa29.03■■■□□ 2.24
SHOX2-201ENST00000389589 TMEM47Q9BQJ4 181 aa29.03■■■□□ 2.24
SHOX2-201ENST00000389589 STX8Q9UNK0 236 aa29.03■■■□□ 2.24
SHOX2-201ENST00000389589 BAZ2BQ9UIF8 2168 aaKnown RBP29.02■■■□□ 2.24
SHOX2-201ENST00000389589 APOBEC3HQ6NTF7 200 aaKnown RBP29.02■■■□□ 2.24
SHOX2-201ENST00000389589 CDC42EP5Q6NZY7 148 aa29.02■■■□□ 2.24
SHOX2-201ENST00000389589 DEFB132Q7Z7B7 95 aa29.02■■■□□ 2.24
SHOX2-201ENST00000389589 SCG2P13521 617 aa29.01■■■□□ 2.24
SHOX2-201ENST00000389589 PFKFB3Q16875 520 aaPredicted RBP29.01■■■□□ 2.24
SHOX2-201ENST00000389589 MRVI1Q9Y6F6 885 aa29.01■■■□□ 2.24
SHOX2-201ENST00000389589 PLIN4Q96Q06 1357 aa29.01■■■□□ 2.24
SHOX2-201ENST00000389589 A0A1B0GVL5 298 aa29.01■■■□□ 2.23
SHOX2-201ENST00000389589 GABPAQ06546 454 aa29.01■■■□□ 2.23
SHOX2-201ENST00000389589 LZTS2Q9BRK4 669 aa29.01■■■□□ 2.23
SHOX2-201ENST00000389589 KCNQ5Q9NR82 932 aa29.01■■■□□ 2.23
SHOX2-201ENST00000389589 SWAP70Q9UH65 585 aa29.01■■■□□ 2.23
SHOX2-201ENST00000389589 PSME4Q14997 1843 aa29.01■■■□□ 2.23
SHOX2-201ENST00000389589 hCG_1642624A0A1W2PR95 340 aa29■■■□□ 2.23
SHOX2-201ENST00000389589 MARCKSP29966 332 aaPredicted RBP29■■■□□ 2.23
SHOX2-201ENST00000389589 TOB1P50616 345 aaPredicted RBP29■■■□□ 2.23
SHOX2-201ENST00000389589 NDUFA8P51970 172 aa29■■■□□ 2.23
SHOX2-201ENST00000389589 NR5A1Q13285 461 aa29■■■□□ 2.23
SHOX2-201ENST00000389589 SHISA4Q96DD7 197 aa29■■■□□ 2.23
SHOX2-201ENST00000389589 DDX4Q9NQI0 724 aaKnown RBP29■■■□□ 2.23
SHOX2-201ENST00000389589 MYO3BQ8WXR4 1341 aa29■■■□□ 2.23
SHOX2-201ENST00000389589 CUTAO60888 179 aa29■■■□□ 2.23
SHOX2-201ENST00000389589 CAVIN2O95810 425 aa29■■■□□ 2.23
SHOX2-201ENST00000389589 AOC3Q16853 763 aa29■■■□□ 2.23
SHOX2-201ENST00000389589 FAM200AQ8TCP9 573 aa29■■■□□ 2.23
SHOX2-201ENST00000389589 OXER1Q8TDS5 423 aa29■■■□□ 2.23
SHOX2-201ENST00000389589 OSBPL5Q9H0X9 879 aaPredicted RBP29■■■□□ 2.23
SHOX2-201ENST00000389589 MAD2L2Q9UI95 211 aa29■■■□□ 2.23
SHOX2-201ENST00000389589 CEP131Q9UPN4 1083 aa29■■■□□ 2.23
SHOX2-201ENST00000389589 NOVP48745 357 aa28.99■■■□□ 2.23
SHOX2-201ENST00000389589 PDGFDQ9GZP0 370 aaPredicted RBP28.99■■■□□ 2.23
SHOX2-201ENST00000389589 KIF13BQ9NQT8 1826 aa28.98■■■□□ 2.23
SHOX2-201ENST00000389589 TOP1P11387 765 aaKnown RBP28.98■■■□□ 2.23
SHOX2-201ENST00000389589 TTLL6Q8N841 843 aa28.98■■■□□ 2.23
SHOX2-201ENST00000389589 KIAA0825Q8IV33 1275 aa28.98■■■□□ 2.23
SHOX2-201ENST00000389589 SH3GLB2Q9NR46 395 aa28.98■■■□□ 2.23
SHOX2-201ENST00000389589 SERPINB13Q9UIV8 391 aa28.98■■■□□ 2.23
SHOX2-201ENST00000389589 HLA-DOAP06340 250 aa28.97■■■□□ 2.23
SHOX2-201ENST00000389589 MORC2Q9Y6X9 1032 aaPredicted RBP28.97■■■□□ 2.23
SHOX2-201ENST00000389589 PALM3A6NDB9 673 aaPredicted RBP28.97■■■□□ 2.23
SHOX2-201ENST00000389589 KRI1Q8N9T8 703 aaKnown RBP28.97■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms