RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 SH3GL2Q99962 352 aa16.56■□□□□ 0.24
VPS9D1-201ENST00000389386 GPHNQ9NQX3 736 aaPredicted RBP16.56■□□□□ 0.24
VPS9D1-201ENST00000389386 COL14A1Q05707 1796 aaKnown RBP16.56■□□□□ 0.24
VPS9D1-201ENST00000389386 TARSL2A2RTX5 802 aaKnown RBP16.55■□□□□ 0.24
VPS9D1-201ENST00000389386 FECHP22830 423 aa16.55■□□□□ 0.24
VPS9D1-201ENST00000389386 JMYQ8N9B5 988 aa16.55■□□□□ 0.24
VPS9D1-201ENST00000389386 CD248Q9HCU0 757 aa16.55■□□□□ 0.24
VPS9D1-201ENST00000389386 DBNLQ9UJU6 430 aaKnown RBP16.55■□□□□ 0.24
VPS9D1-201ENST00000389386 KCNH3Q9ULD8 1083 aa16.55■□□□□ 0.24
VPS9D1-201ENST00000389386 MFAP3LO75121 409 aa16.55■□□□□ 0.24
VPS9D1-201ENST00000389386 PBX1P40424 430 aa16.55■□□□□ 0.24
VPS9D1-201ENST00000389386 PREPLQ4J6C6 727 aaPredicted RBP16.55■□□□□ 0.24
VPS9D1-201ENST00000389386 LRCH2Q5VUJ6 765 aa16.55■□□□□ 0.24
VPS9D1-201ENST00000389386 FBXL16Q8N461 479 aa16.55■□□□□ 0.24
VPS9D1-201ENST00000389386 NBPF3Q9H094 633 aa16.55■□□□□ 0.24
VPS9D1-201ENST00000389386 TFCP2Q12800 502 aa16.54■□□□□ 0.24
VPS9D1-201ENST00000389386 HSP90AB3PQ58FF7 597 aa16.54■□□□□ 0.24
VPS9D1-201ENST00000389386 B4GALNT4Q76KP1 1039 aa16.54■□□□□ 0.24
VPS9D1-201ENST00000389386 TRAPPC11Q7Z392 1133 aa16.54■□□□□ 0.24
VPS9D1-201ENST00000389386 ELOA2Q8IYF1 753 aaPredicted RBP16.54■□□□□ 0.24
VPS9D1-201ENST00000389386 SELENOOQ9BVL4 669 aa16.54■□□□□ 0.24
VPS9D1-201ENST00000389386 GOLGA6BA6NDN3 693 aa16.54■□□□□ 0.24
VPS9D1-201ENST00000389386 CCNI2Q6ZMN8 369 aaPredicted RBP16.54■□□□□ 0.24
VPS9D1-201ENST00000389386 OTUD6BQ8N6M0 293 aa16.54■□□□□ 0.24
VPS9D1-201ENST00000389386 DSCC1Q9BVC3 393 aa16.54■□□□□ 0.24
VPS9D1-201ENST00000389386 PKD1L3Q7Z443 1732 aa16.54■□□□□ 0.24
VPS9D1-201ENST00000389386 H0YHG0 523 aa16.54■□□□□ 0.24
VPS9D1-201ENST00000389386 PPP2R5AQ15172 486 aa16.54■□□□□ 0.24
VPS9D1-201ENST00000389386 SLC9C2Q5TAH2 1124 aa16.54■□□□□ 0.24
VPS9D1-201ENST00000389386 LMBR1LQ6UX01 489 aa16.54■□□□□ 0.24
VPS9D1-201ENST00000389386 DACH1Q9UI36 760 aa16.54■□□□□ 0.24
VPS9D1-201ENST00000389386 MRC1P22897 1456 aa16.53■□□□□ 0.24
VPS9D1-201ENST00000389386 SH3TC1Q8TE82 1336 aa16.53■□□□□ 0.24
VPS9D1-201ENST00000389386 ZMYND10O75800 440 aa16.53■□□□□ 0.24
VPS9D1-201ENST00000389386 MYBL2P10244 700 aa16.53■□□□□ 0.24
VPS9D1-201ENST00000389386 RDXP35241 583 aaKnown RBP16.53■□□□□ 0.24
VPS9D1-201ENST00000389386 PTPN12Q05209 780 aaKnown RBP16.53■□□□□ 0.24
VPS9D1-201ENST00000389386 MORC3Q14149 939 aa16.53■□□□□ 0.24
VPS9D1-201ENST00000389386 NT5DC1Q5TFE4 455 aa16.53■□□□□ 0.24
VPS9D1-201ENST00000389386 FAM43BQ6ZT52 329 aaPredicted RBP16.53■□□□□ 0.24
VPS9D1-201ENST00000389386 FAXDC2Q96IV6 333 aa16.53■□□□□ 0.24
VPS9D1-201ENST00000389386 MMS19Q96T76 1030 aa16.53■□□□□ 0.24
VPS9D1-201ENST00000389386 MAP3K14Q99558 947 aa16.53■□□□□ 0.24
VPS9D1-201ENST00000389386 VEZTQ9HBM0 779 aa16.53■□□□□ 0.24
VPS9D1-201ENST00000389386 MEFVO15553 781 aaPredicted RBP16.53■□□□□ 0.24
VPS9D1-201ENST00000389386 CASP14P31944 242 aa16.53■□□□□ 0.24
VPS9D1-201ENST00000389386 SARSP49591 514 aaKnown RBP16.53■□□□□ 0.24
VPS9D1-201ENST00000389386 ZNF827Q17R98 1081 aa16.53■□□□□ 0.24
VPS9D1-201ENST00000389386 CCDC51Q96ER9 411 aa16.53■□□□□ 0.24
VPS9D1-201ENST00000389386 CCDC85AQ96PX6 553 aaPredicted RBP16.53■□□□□ 0.24
VPS9D1-201ENST00000389386 WWC3Q9ULE0 1092 aa16.53■□□□□ 0.24
VPS9D1-201ENST00000389386 HPS5Q9UPZ3 1129 aa16.53■□□□□ 0.24
VPS9D1-201ENST00000389386 PARP4Q9UKK3 1724 aaKnown RBP16.52■□□□□ 0.24
VPS9D1-201ENST00000389386 IRF6O14896 467 aa16.52■□□□□ 0.24
VPS9D1-201ENST00000389386 DDX46Q7L014 1031 aaKnown RBP16.52■□□□□ 0.24
VPS9D1-201ENST00000389386 TMTC1Q8IUR5 882 aa16.52■□□□□ 0.24
VPS9D1-201ENST00000389386 HAUS7Q99871 368 aa16.52■□□□□ 0.24
VPS9D1-201ENST00000389386 PLCH1Q4KWH8 1693 aa16.52■□□□□ 0.23
VPS9D1-201ENST00000389386 KIAA0754O94854 1291 aa16.52■□□□□ 0.23
VPS9D1-201ENST00000389386 FXR1P51114 621 aaKnown RBP eCLIP16.52■□□□□ 0.23
VPS9D1-201ENST00000389386 ERVK-24P63145 666 aa16.52■□□□□ 0.23
VPS9D1-201ENST00000389386 TTC19Q6DKK2 380 aaPredicted RBP16.52■□□□□ 0.23
VPS9D1-201ENST00000389386 GSPT2Q8IYD1 628 aaKnown RBP16.52■□□□□ 0.23
VPS9D1-201ENST00000389386 PLBD2Q8NHP8 589 aa16.52■□□□□ 0.23
VPS9D1-201ENST00000389386 TBC1D22AQ8WUA7 517 aa16.52■□□□□ 0.23
VPS9D1-201ENST00000389386 N4BP2L2Q92802 583 aaPredicted RBP16.52■□□□□ 0.23
VPS9D1-201ENST00000389386 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.52■□□□□ 0.23
VPS9D1-201ENST00000389386 RFX5P48382 616 aaPredicted RBP16.51■□□□□ 0.23
VPS9D1-201ENST00000389386 POSTNQ15063 836 aa16.51■□□□□ 0.23
VPS9D1-201ENST00000389386 WLSQ5T9L3 541 aa16.51■□□□□ 0.23
VPS9D1-201ENST00000389386 SPATS2Q86XZ4 545 aaKnown RBP16.51■□□□□ 0.23
VPS9D1-201ENST00000389386 CNGA4Q8IV77 575 aa16.51■□□□□ 0.23
VPS9D1-201ENST00000389386 RNF217Q8TC41 542 aa16.51■□□□□ 0.23
VPS9D1-201ENST00000389386 ADD3Q9UEY8 706 aaKnown RBP16.51■□□□□ 0.23
VPS9D1-201ENST00000389386 AFDNP55196 1824 aaKnown RBP16.51■□□□□ 0.23
VPS9D1-201ENST00000389386 GOLIM4O00461 696 aa16.51■□□□□ 0.23
VPS9D1-201ENST00000389386 NDUFAB1O14561 156 aa16.51■□□□□ 0.23
VPS9D1-201ENST00000389386 GYPCP04921 128 aa16.51■□□□□ 0.23
VPS9D1-201ENST00000389386 SKOR1P84550 965 aa16.51■□□□□ 0.23
VPS9D1-201ENST00000389386 ZNF594Q96JF6 807 aaPredicted RBP16.51■□□□□ 0.23
VPS9D1-201ENST00000389386 HDAC6Q9UBN7 1215 aa16.51■□□□□ 0.23
VPS9D1-201ENST00000389386 SPATA31A1Q5TZJ5 1347 aa16.51■□□□□ 0.23
VPS9D1-201ENST00000389386 NF2P35240 595 aa16.5■□□□□ 0.23
VPS9D1-201ENST00000389386 PLCD1P51178 756 aa16.5■□□□□ 0.23
VPS9D1-201ENST00000389386 FAM98CQ17RN3 349 aaKnown RBP16.5■□□□□ 0.23
VPS9D1-201ENST00000389386 KBTBD3Q8NAB2 608 aa16.5■□□□□ 0.23
VPS9D1-201ENST00000389386 DBNDD2Q9BQY9 259 aa16.5■□□□□ 0.23
VPS9D1-201ENST00000389386 ASAP1Q9ULH1 1129 aa16.5■□□□□ 0.23
VPS9D1-201ENST00000389386 GOLGA8KD6RF30 607 aa16.5■□□□□ 0.23
VPS9D1-201ENST00000389386 HSPD1P10809 573 aaKnown RBP16.5■□□□□ 0.23
VPS9D1-201ENST00000389386 GCFC2P16383 781 aaKnown RBP16.5■□□□□ 0.23
VPS9D1-201ENST00000389386 ERCC5P28715 1186 aaPredicted RBP16.5■□□□□ 0.23
VPS9D1-201ENST00000389386 TNNI3KQ59H18 835 aa16.5■□□□□ 0.23
VPS9D1-201ENST00000389386 VPS37DQ86XT2 251 aa16.5■□□□□ 0.23
VPS9D1-201ENST00000389386 HELLSQ9NRZ9 838 aa16.5■□□□□ 0.23
VPS9D1-201ENST00000389386 KLC4Q9NSK0 619 aa16.5■□□□□ 0.23
VPS9D1-201ENST00000389386 ODF2LQ9ULJ1 636 aa16.5■□□□□ 0.23
VPS9D1-201ENST00000389386 FPGT-TNNI3KV9GXZ4 949 aa16.5■□□□□ 0.23
VPS9D1-201ENST00000389386 PSMD14O00487 310 aa16.49■□□□□ 0.23
VPS9D1-201ENST00000389386 SF3B2Q13435 895 aaKnown RBP16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms