RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 ACRBPQ8NEB7 543 aa9.61□□□□□ -0.87
LIG3-202ENST00000378526 INTS4Q96HW7 963 aaKnown RBP9.61□□□□□ -0.87
LIG3-202ENST00000378526 CDV3Q9UKY7 258 aaKnown RBP9.61□□□□□ -0.87
LIG3-202ENST00000378526 CUX1P39880 1505 aa9.61□□□□□ -0.87
LIG3-202ENST00000378526 GCFC2P16383 781 aaKnown RBP9.61□□□□□ -0.87
LIG3-202ENST00000378526 ATP1A2P50993 1020 aa9.61□□□□□ -0.87
LIG3-202ENST00000378526 LUZP2Q86TE4 346 aa9.61□□□□□ -0.87
LIG3-202ENST00000378526 FBXO18Q8NFZ0 1043 aa9.61□□□□□ -0.87
LIG3-202ENST00000378526 LRP2BPQ9P2M1 347 aa9.61□□□□□ -0.87
LIG3-202ENST00000378526 SLC4A1P02730 911 aa9.61□□□□□ -0.87
LIG3-202ENST00000378526 ATAD3BQ5T9A4 648 aa9.61□□□□□ -0.87
LIG3-202ENST00000378526 TMTC2Q8N394 836 aa9.61□□□□□ -0.87
LIG3-202ENST00000378526 OGFOD1Q8N543 542 aa9.61□□□□□ -0.87
LIG3-202ENST00000378526 ING2Q9H160 280 aa9.61□□□□□ -0.87
LIG3-202ENST00000378526 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.61□□□□□ -0.87
LIG3-202ENST00000378526 CCT6AP40227 531 aaKnown RBP9.61□□□□□ -0.87
LIG3-202ENST00000378526 TTC16Q8NEE8 873 aa9.61□□□□□ -0.87
LIG3-202ENST00000378526 ENOX1Q8TC92 643 aaKnown RBP9.61□□□□□ -0.87
LIG3-202ENST00000378526 KRT82Q9NSB4 513 aa9.61□□□□□ -0.87
LIG3-202ENST00000378526 ABCF2Q9UG63 623 aa9.61□□□□□ -0.87
LIG3-202ENST00000378526 ZNF148Q9UQR1 794 aa9.61□□□□□ -0.87
LIG3-202ENST00000378526 METAP2P50579 478 aaKnown RBP eCLIP9.61□□□□□ -0.87
LIG3-202ENST00000378526 DRP2Q13474 957 aa9.61□□□□□ -0.87
LIG3-202ENST00000378526 BRAPQ7Z569 592 aa9.61□□□□□ -0.87
LIG3-202ENST00000378526 TADA3O75528 432 aa9.6□□□□□ -0.87
LIG3-202ENST00000378526 S100A5P33763 92 aa9.6□□□□□ -0.87
LIG3-202ENST00000378526 SMTNP53814 917 aa9.6□□□□□ -0.87
LIG3-202ENST00000378526 ANO5Q75V66 913 aa9.6□□□□□ -0.87
LIG3-202ENST00000378526 CCDC105Q8IYK2 499 aa9.6□□□□□ -0.87
LIG3-202ENST00000378526 TMEM87AQ8NBN3 555 aa9.6□□□□□ -0.87
LIG3-202ENST00000378526 C19orf60Q96EN9 201 aa9.6□□□□□ -0.87
LIG3-202ENST00000378526 DIAPH2O60879 1101 aa9.6□□□□□ -0.87
LIG3-202ENST00000378526 ASPHQ12797 758 aa9.6□□□□□ -0.87
LIG3-202ENST00000378526 RPS6KA1Q15418 735 aa9.6□□□□□ -0.87
LIG3-202ENST00000378526 ALS2CLQ60I27 953 aa9.6□□□□□ -0.87
LIG3-202ENST00000378526 BRD8Q9H0E9 1235 aa9.6□□□□□ -0.87
LIG3-202ENST00000378526 GOLGA8RI6L899 631 aa9.6□□□□□ -0.87
LIG3-202ENST00000378526 KIF9Q9HAQ2 790 aa9.6□□□□□ -0.87
LIG3-202ENST00000378526 TMOD2Q9NZR1 351 aa9.6□□□□□ -0.87
LIG3-202ENST00000378526 F13A1P00488 732 aa9.6□□□□□ -0.87
LIG3-202ENST00000378526 GUCY1B3Q02153 619 aa9.6□□□□□ -0.87
LIG3-202ENST00000378526 DYDC2Q96IM9 177 aa9.6□□□□□ -0.87
LIG3-202ENST00000378526 MKNK2Q9HBH9 465 aa9.6□□□□□ -0.87
LIG3-202ENST00000378526 PDE11AQ9HCR9 933 aa9.6□□□□□ -0.87
LIG3-202ENST00000378526 CEP126Q9P2H0 1117 aa9.6□□□□□ -0.87
LIG3-202ENST00000378526 ADAMTS8Q9UP79 889 aa9.6□□□□□ -0.87
LIG3-202ENST00000378526 MAN1A1P33908 653 aa9.6□□□□□ -0.87
LIG3-202ENST00000378526 AP1B1Q10567 949 aa9.6□□□□□ -0.87
LIG3-202ENST00000378526 STX10O60499 249 aa9.6□□□□□ -0.87
LIG3-202ENST00000378526 KIF11P52732 1056 aa9.6□□□□□ -0.87
LIG3-202ENST00000378526 ADCK1Q86TW2 530 aa9.6□□□□□ -0.87
LIG3-202ENST00000378526 IFT122Q9HBG6 1241 aa9.6□□□□□ -0.87
LIG3-202ENST00000378526 RIC8AQ9NPQ8 531 aa9.6□□□□□ -0.87
LIG3-202ENST00000378526 DKK3Q9UBP4 350 aa9.6□□□□□ -0.87
LIG3-202ENST00000378526 SCG2P13521 617 aa9.59□□□□□ -0.87
LIG3-202ENST00000378526 GJC1P36383 396 aa9.59□□□□□ -0.87
LIG3-202ENST00000378526 TCP11L2Q8N4U5 519 aa9.59□□□□□ -0.87
LIG3-202ENST00000378526 STRN3Q13033 797 aa9.59□□□□□ -0.87
LIG3-202ENST00000378526 NDUFA5Q16718 116 aa9.59□□□□□ -0.87
LIG3-202ENST00000378526 NLRP9Q7RTR0 991 aa9.59□□□□□ -0.87
LIG3-202ENST00000378526 RIOK1Q9BRS2 568 aaKnown RBP9.59□□□□□ -0.87
LIG3-202ENST00000378526 CARD10Q9BWT7 1032 aa9.59□□□□□ -0.87
LIG3-202ENST00000378526 THAP12O43422 761 aa9.59□□□□□ -0.87
LIG3-202ENST00000378526 POLR3DP05423 398 aaPredicted RBP9.59□□□□□ -0.87
LIG3-202ENST00000378526 WARS2Q9UGM6 360 aaKnown RBP9.59□□□□□ -0.87
LIG3-202ENST00000378526 STRIP2Q9ULQ0 834 aa9.59□□□□□ -0.87
LIG3-202ENST00000378526 SLC4A2P04920 1241 aa9.59□□□□□ -0.87
LIG3-202ENST00000378526 AFMP43652 599 aa9.59□□□□□ -0.87
LIG3-202ENST00000378526 SRRM1Q8IYB3 904 aaKnown RBP9.59□□□□□ -0.87
LIG3-202ENST00000378526 TRIML1Q8N9V2 468 aa9.59□□□□□ -0.87
LIG3-202ENST00000378526 LRRC37BQ96QE4 947 aa9.59□□□□□ -0.87
LIG3-202ENST00000378526 RMI1Q9H9A7 625 aa9.59□□□□□ -0.87
LIG3-202ENST00000378526 PFDN6O15212 129 aa9.59□□□□□ -0.87
LIG3-202ENST00000378526 NPR1P16066 1061 aa9.59□□□□□ -0.87
LIG3-202ENST00000378526 ZNF75DP51815 510 aa9.59□□□□□ -0.87
LIG3-202ENST00000378526 STX19Q8N4C7 294 aa9.59□□□□□ -0.87
LIG3-202ENST00000378526 OMA1Q96E52 524 aa9.59□□□□□ -0.87
LIG3-202ENST00000378526 TRIM56Q9BRZ2 755 aaKnown RBP9.59□□□□□ -0.87
LIG3-202ENST00000378526 TRAIPQ9BWF2 469 aa9.59□□□□□ -0.87
LIG3-202ENST00000378526 STX18Q9P2W9 335 aaKnown RBP9.59□□□□□ -0.87
LIG3-202ENST00000378526 IFIT3O14879 490 aaKnown RBP9.59□□□□□ -0.87
LIG3-202ENST00000378526 ART3Q13508 389 aa9.59□□□□□ -0.87
LIG3-202ENST00000378526 LAMB3Q13751 1172 aa9.59□□□□□ -0.87
LIG3-202ENST00000378526 GRAMD1BQ3KR37 738 aa9.59□□□□□ -0.87
LIG3-202ENST00000378526 EFHD2Q96C19 240 aaPredicted RBP9.59□□□□□ -0.87
LIG3-202ENST00000378526 EIF3CLB5ME19 914 aaKnown RBP9.59□□□□□ -0.87
LIG3-202ENST00000378526 SPTLC2O15270 562 aa9.59□□□□□ -0.87
LIG3-202ENST00000378526 RASSF9O75901 435 aa9.59□□□□□ -0.87
LIG3-202ENST00000378526 GSTA1P08263 222 aa9.59□□□□□ -0.87
LIG3-202ENST00000378526 GSTA2P09210 222 aa9.59□□□□□ -0.87
LIG3-202ENST00000378526 EPB41P11171 864 aaKnown RBP9.59□□□□□ -0.87
LIG3-202ENST00000378526 PSMA4P25789 261 aaKnown RBP9.59□□□□□ -0.87
LIG3-202ENST00000378526 GARSP41250 739 aaKnown RBP9.59□□□□□ -0.87
LIG3-202ENST00000378526 ASIC1P78348 528 aa9.59□□□□□ -0.87
LIG3-202ENST00000378526 LETM2Q2VYF4 491 aa9.59□□□□□ -0.87
LIG3-202ENST00000378526 DACH2Q96NX9 599 aa9.59□□□□□ -0.87
LIG3-202ENST00000378526 EIF3CQ99613 913 aaKnown RBP9.59□□□□□ -0.87
LIG3-202ENST00000378526 ANKRD42Q8N9B4 389 aa9.58□□□□□ -0.88
LIG3-202ENST00000378526 OSBPL1AQ9BXW6 950 aa9.58□□□□□ -0.88
LIG3-202ENST00000378526 TRIM37O94972 964 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms