RNA–Protein interactions for RNA: ENST00000378156.8

NPHP4-201, Transcript of nephrocystin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP4, Length 4,994 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-201ENST00000378156 SYNRGQ9UMZ2 1314 aa16.81■□□□□ 0.28
NPHP4-201ENST00000378156 CEP63Q96MT8 703 aa16.81■□□□□ 0.28
NPHP4-201ENST00000378156 ZNF335Q9H4Z2 1342 aaPredicted RBP16.81■□□□□ 0.28
NPHP4-201ENST00000378156 PPP2R3AQ06190 1150 aa16.81■□□□□ 0.28
NPHP4-201ENST00000378156 PPM1EQ8WY54 764 aa16.81■□□□□ 0.28
NPHP4-201ENST00000378156 LRWD1Q9UFC0 647 aa16.81■□□□□ 0.28
NPHP4-201ENST00000378156 HEG1Q9ULI3 1381 aa16.81■□□□□ 0.28
NPHP4-201ENST00000378156 NLGN1Q8N2Q7 840 aa16.8■□□□□ 0.28
NPHP4-201ENST00000378156 CLIC6Q96NY7 704 aa16.8■□□□□ 0.28
NPHP4-201ENST00000378156 SYNCQ9H7C4 482 aa16.8■□□□□ 0.28
NPHP4-201ENST00000378156 BRINP3Q76B58 766 aa16.8■□□□□ 0.28
NPHP4-201ENST00000378156 FBF1Q8TES7 1133 aa16.8■□□□□ 0.28
NPHP4-201ENST00000378156 ARHGAP6O43182 974 aa16.8■□□□□ 0.28
NPHP4-201ENST00000378156 TBC1D8BQ0IIM8 1120 aa16.8■□□□□ 0.28
NPHP4-201ENST00000378156 EPHA10Q5JZY3 1008 aa16.8■□□□□ 0.28
NPHP4-201ENST00000378156 PI16Q6UXB8 463 aa16.8■□□□□ 0.28
NPHP4-201ENST00000378156 NIM1KQ8IY84 436 aa16.8■□□□□ 0.28
NPHP4-201ENST00000378156 FANCBQ8NB91 859 aa16.8■□□□□ 0.28
NPHP4-201ENST00000378156 BTBD18B2RXH4 712 aa16.79■□□□□ 0.28
NPHP4-201ENST00000378156 CMA1P23946 247 aa16.79■□□□□ 0.28
NPHP4-201ENST00000378156 TTC31Q49AM3 519 aaPredicted RBP16.79■□□□□ 0.28
NPHP4-201ENST00000378156 CNNM4Q6P4Q7 775 aa16.79■□□□□ 0.28
NPHP4-201ENST00000378156 NOSTRINQ8IVI9 506 aa16.79■□□□□ 0.28
NPHP4-201ENST00000378156 QTRT2Q9H974 415 aaKnown RBP16.79■□□□□ 0.28
NPHP4-201ENST00000378156 ZNF804BA4D1E1 1349 aa16.79■□□□□ 0.28
NPHP4-201ENST00000378156 CCDC122Q5T0U0 273 aa16.79■□□□□ 0.28
NPHP4-201ENST00000378156 MSL1Q68DK7 614 aa16.79■□□□□ 0.28
NPHP4-201ENST00000378156 ARFGAP2Q8N6H7 521 aa16.79■□□□□ 0.28
NPHP4-201ENST00000378156 PIGBQ92521 554 aa16.79■□□□□ 0.28
NPHP4-201ENST00000378156 ZSCAN10Q96SZ4 725 aaPredicted RBP16.79■□□□□ 0.28
NPHP4-201ENST00000378156 ATG3Q9NT62 314 aa16.79■□□□□ 0.28
NPHP4-201ENST00000378156 SPATA31A3Q5VYP0 1347 aa16.79■□□□□ 0.28
NPHP4-201ENST00000378156 M0R2C6 588 aa16.79■□□□□ 0.28
NPHP4-201ENST00000378156 IGKV5-2P06315 115 aa16.79■□□□□ 0.28
NPHP4-201ENST00000378156 NLRP10Q86W26 655 aa16.79■□□□□ 0.28
NPHP4-201ENST00000378156 LRRC8AQ8IWT6 810 aa16.79■□□□□ 0.28
NPHP4-201ENST00000378156 REXO1Q8N1G1 1221 aaKnown RBP16.79■□□□□ 0.28
NPHP4-201ENST00000378156 MRFAP1L1Q96HT8 127 aa16.79■□□□□ 0.28
NPHP4-201ENST00000378156 SELENOOQ9BVL4 669 aa16.79■□□□□ 0.28
NPHP4-201ENST00000378156 TMOD4Q9NZQ9 345 aa16.79■□□□□ 0.28
NPHP4-201ENST00000378156 TNKSO95271 1327 aa16.79■□□□□ 0.28
NPHP4-201ENST00000378156 ZMYM6O95789 1325 aa16.79■□□□□ 0.28
NPHP4-201ENST00000378156 ZNF827Q17R98 1081 aa16.79■□□□□ 0.28
NPHP4-201ENST00000378156 NBPF11Q86T75 865 aa16.79■□□□□ 0.28
NPHP4-201ENST00000378156 CHMP2AO43633 222 aa16.78■□□□□ 0.28
NPHP4-201ENST00000378156 ACTN2P35609 894 aa16.78■□□□□ 0.28
NPHP4-201ENST00000378156 GRM1Q13255 1194 aa16.78■□□□□ 0.28
NPHP4-201ENST00000378156 HOOK2Q96ED9 719 aa16.78■□□□□ 0.28
NPHP4-201ENST00000378156 PRPHP41219 470 aa16.78■□□□□ 0.28
NPHP4-201ENST00000378156 IRX3P78415 501 aaPredicted RBP16.78■□□□□ 0.28
NPHP4-201ENST00000378156 TDRD7Q8NHU6 1098 aaKnown RBP16.78■□□□□ 0.28
NPHP4-201ENST00000378156 SNX29Q8TEQ0 813 aa16.78■□□□□ 0.28
NPHP4-201ENST00000378156 LMBR1Q8WVP7 490 aa16.78■□□□□ 0.28
NPHP4-201ENST00000378156 ATRIPQ8WXE1 791 aa16.78■□□□□ 0.28
NPHP4-201ENST00000378156 POLR1AO95602 1720 aaPredicted RBP16.78■□□□□ 0.28
NPHP4-201ENST00000378156 CPXCR1Q8N123 301 aa16.78■□□□□ 0.28
NPHP4-201ENST00000378156 MICALL1Q8N3F8 863 aa16.78■□□□□ 0.28
NPHP4-201ENST00000378156 NOC4LQ9BVI4 516 aaKnown RBP16.78■□□□□ 0.28
NPHP4-201ENST00000378156 ADKP55263 362 aaKnown RBP16.78■□□□□ 0.28
NPHP4-201ENST00000378156 NCBP1Q09161 790 aaKnown RBP16.78■□□□□ 0.28
NPHP4-201ENST00000378156 FAM196AQ6ZSG2 479 aa16.78■□□□□ 0.28
NPHP4-201ENST00000378156 OSBP2Q969R2 916 aa16.78■□□□□ 0.28
NPHP4-201ENST00000378156 STMN4Q9H169 189 aaPredicted RBP16.78■□□□□ 0.28
NPHP4-201ENST00000378156 RASSF4Q9H2L5 321 aa16.78■□□□□ 0.28
NPHP4-201ENST00000378156 TAB2Q9NYJ8 693 aa16.78■□□□□ 0.28
NPHP4-201ENST00000378156 ERVV-1B6SEH8 477 aa16.77■□□□□ 0.28
NPHP4-201ENST00000378156 CYP27B1O15528 508 aa16.77■□□□□ 0.28
NPHP4-201ENST00000378156 CEP152O94986 1710 aa16.77■□□□□ 0.28
NPHP4-201ENST00000378156 C11orf57Q6ZUT1 292 aaPredicted RBP16.77■□□□□ 0.28
NPHP4-201ENST00000378156 OTUD6BQ8N6M0 293 aa16.77■□□□□ 0.28
NPHP4-201ENST00000378156 ANKS4BQ8N8V4 417 aa16.77■□□□□ 0.28
NPHP4-201ENST00000378156 BLZF1Q9H2G9 400 aa16.77■□□□□ 0.28
NPHP4-201ENST00000378156 RTEL1Q9NZ71 1219 aa16.77■□□□□ 0.28
NPHP4-201ENST00000378156 DCAF17Q5H9S7 520 aaPredicted RBP16.77■□□□□ 0.28
NPHP4-201ENST00000378156 CARMIL3Q8ND23 1372 aa16.77■□□□□ 0.28
NPHP4-201ENST00000378156 PAK1Q13153 545 aa16.77■□□□□ 0.27
NPHP4-201ENST00000378156 CSGALNACT2Q8N6G5 542 aa16.77■□□□□ 0.27
NPHP4-201ENST00000378156 PNMA1Q8ND90 353 aa16.77■□□□□ 0.27
NPHP4-201ENST00000378156 SLFNL1Q499Z3 407 aa16.77■□□□□ 0.27
NPHP4-201ENST00000378156 SEC31BQ9NQW1 1179 aa16.77■□□□□ 0.27
NPHP4-201ENST00000378156 CCDC121Q6ZUS5 278 aa16.76■□□□□ 0.27
NPHP4-201ENST00000378156 FAM212AQ96EL1 285 aa16.76■□□□□ 0.27
NPHP4-201ENST00000378156 VPS18Q9P253 973 aa16.76■□□□□ 0.27
NPHP4-201ENST00000378156 FRMD4BQ9Y2L6 1034 aa16.76■□□□□ 0.27
NPHP4-201ENST00000378156 USH1GQ495M9 461 aa16.76■□□□□ 0.27
NPHP4-201ENST00000378156 LONRF3Q496Y0 759 aa16.76■□□□□ 0.27
NPHP4-201ENST00000378156 KIAA0825Q8IV33 1275 aa16.76■□□□□ 0.27
NPHP4-201ENST00000378156 FANCLQ9NW38 375 aa16.76■□□□□ 0.27
NPHP4-201ENST00000378156 SMCO2A6NFE2 343 aa16.76■□□□□ 0.27
NPHP4-201ENST00000378156 CFBP00751 764 aa16.76■□□□□ 0.27
NPHP4-201ENST00000378156 KRT9P35527 623 aa16.76■□□□□ 0.27
NPHP4-201ENST00000378156 CALCRLQ16602 461 aa16.76■□□□□ 0.27
NPHP4-201ENST00000378156 C2CD5Q86YS7 1000 aa16.76■□□□□ 0.27
NPHP4-201ENST00000378156 VTI1AQ96AJ9 217 aa16.76■□□□□ 0.27
NPHP4-201ENST00000378156 RCOR1Q9UKL0 485 aa16.76■□□□□ 0.27
NPHP4-201ENST00000378156 ZNF215Q9UL58 517 aaPredicted RBP16.76■□□□□ 0.27
NPHP4-201ENST00000378156 FAM182BQ5T319 152 aa16.75■□□□□ 0.27
NPHP4-201ENST00000378156 LEMD3Q9Y2U8 911 aa16.75■□□□□ 0.27
NPHP4-201ENST00000378156 A0A1W2PQ27 194 aa16.75■□□□□ 0.27
NPHP4-201ENST00000378156 A0A1W2PQ64 194 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms