RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 PCDH11XQ9BZA7 1347 aa13.77□□□□□ -0.21
VPS13A-204ENST00000376634 PCDH11YQ9BZA8 1340 aa13.77□□□□□ -0.21
VPS13A-204ENST00000376634 MYH7P12883 1935 aa13.77□□□□□ -0.21
VPS13A-204ENST00000376634 DNM3Q9UQ16 869 aa13.77□□□□□ -0.21
VPS13A-204ENST00000376634 RGS16O15492 202 aaPredicted RBP13.76□□□□□ -0.21
VPS13A-204ENST00000376634 DDB1Q16531 1140 aa13.76□□□□□ -0.21
VPS13A-204ENST00000376634 SKA2Q8WVK7 121 aaPredicted RBP13.76□□□□□ -0.21
VPS13A-204ENST00000376634 IPO11Q9UI26 975 aaKnown RBP13.76□□□□□ -0.21
VPS13A-204ENST00000376634 BEND3Q5T5X7 828 aa13.76□□□□□ -0.21
VPS13A-204ENST00000376634 URB2Q14146 1524 aaKnown RBP13.76□□□□□ -0.21
VPS13A-204ENST00000376634 LLPHQ9BRT6 129 aaKnown RBP13.76□□□□□ -0.21
VPS13A-204ENST00000376634 TRIM56Q9BRZ2 755 aaKnown RBP13.76□□□□□ -0.21
VPS13A-204ENST00000376634 VPS37BQ9H9H4 285 aa13.76□□□□□ -0.21
VPS13A-204ENST00000376634 HELLSQ9NRZ9 838 aa13.76□□□□□ -0.21
VPS13A-204ENST00000376634 TPX2Q9ULW0 747 aaKnown RBP13.76□□□□□ -0.21
VPS13A-204ENST00000376634 CFAP74Q9C0B2 1584 aa13.76□□□□□ -0.21
VPS13A-204ENST00000376634 IMPACTQ9P2X3 320 aa13.76□□□□□ -0.21
VPS13A-204ENST00000376634 TROVE2P10155 538 aaKnown RBP eCLIP13.76□□□□□ -0.21
VPS13A-204ENST00000376634 TRIM35Q9UPQ4 493 aa13.76□□□□□ -0.21
VPS13A-204ENST00000376634 ARHGAP42A6NI28 874 aa13.76□□□□□ -0.21
VPS13A-204ENST00000376634 XRCC6P12956 609 aaKnown RBP eCLIP13.76□□□□□ -0.21
VPS13A-204ENST00000376634 PDCD7Q8N8D1 485 aaKnown RBP13.76□□□□□ -0.21
VPS13A-204ENST00000376634 TEKT1Q969V4 418 aa13.76□□□□□ -0.21
VPS13A-204ENST00000376634 TRIM4Q9C037 500 aa13.76□□□□□ -0.21
VPS13A-204ENST00000376634 TBC1D7Q9P0N9 293 aa13.76□□□□□ -0.21
VPS13A-204ENST00000376634 IL2RBP14784 551 aa13.76□□□□□ -0.21
VPS13A-204ENST00000376634 IQCDQ96DY2 449 aa13.76□□□□□ -0.21
VPS13A-204ENST00000376634 MBD4O95243 580 aa13.76□□□□□ -0.21
VPS13A-204ENST00000376634 ATP8B2P98198 1209 aa13.76□□□□□ -0.21
VPS13A-204ENST00000376634 PIK3AP1Q6ZUJ8 805 aa13.76□□□□□ -0.21
VPS13A-204ENST00000376634 MAIP1Q8WWC4 291 aa13.76□□□□□ -0.21
VPS13A-204ENST00000376634 STK38LQ9Y2H1 464 aa13.76□□□□□ -0.21
VPS13A-204ENST00000376634 IGHDP01880 384 aa13.75□□□□□ -0.21
VPS13A-204ENST00000376634 RPS6KA1Q15418 735 aa13.75□□□□□ -0.21
VPS13A-204ENST00000376634 LRRC43Q8N309 656 aa13.75□□□□□ -0.21
VPS13A-204ENST00000376634 NUCKS1Q9H1E3 243 aaKnown RBP13.75□□□□□ -0.21
VPS13A-204ENST00000376634 DDX21Q9NR30 783 aaKnown RBP eCLIP13.75□□□□□ -0.21
VPS13A-204ENST00000376634 GJA3Q9Y6H8 435 aa13.75□□□□□ -0.21
VPS13A-204ENST00000376634 NCAPH2Q6IBW4 605 aa13.75□□□□□ -0.21
VPS13A-204ENST00000376634 PDZD8Q8NEN9 1154 aa13.75□□□□□ -0.21
VPS13A-204ENST00000376634 POMGNT1Q8WZA1 660 aa13.75□□□□□ -0.21
VPS13A-204ENST00000376634 ADCY7P51828 1080 aa13.75□□□□□ -0.21
VPS13A-204ENST00000376634 ANO1Q5XXA6 986 aa13.75□□□□□ -0.21
VPS13A-204ENST00000376634 ANO3Q9BYT9 981 aa13.75□□□□□ -0.21
VPS13A-204ENST00000376634 DENND4BO75064 1496 aaPredicted RBP13.75□□□□□ -0.21
VPS13A-204ENST00000376634 NPATQ14207 1427 aa13.75□□□□□ -0.21
VPS13A-204ENST00000376634 PPME1Q9Y570 386 aa13.75□□□□□ -0.21
VPS13A-204ENST00000376634 DDX39AO00148 427 aaKnown RBP13.75□□□□□ -0.21
VPS13A-204ENST00000376634 UFL1O94874 794 aa13.75□□□□□ -0.21
VPS13A-204ENST00000376634 ATP6V1E1P36543 226 aa13.75□□□□□ -0.21
VPS13A-204ENST00000376634 RAD51AP2Q09MP3 1159 aa13.75□□□□□ -0.21
VPS13A-204ENST00000376634 USH1GQ495M9 461 aa13.75□□□□□ -0.21
VPS13A-204ENST00000376634 SPDYE16A6NNV3 312 aaPredicted RBP13.75□□□□□ -0.21
VPS13A-204ENST00000376634 GNA14O95837 355 aa13.75□□□□□ -0.21
VPS13A-204ENST00000376634 KRT71Q3SY84 523 aa13.75□□□□□ -0.21
VPS13A-204ENST00000376634 SPDYE2Q495Y8 402 aa13.75□□□□□ -0.21
VPS13A-204ENST00000376634 AKAP4Q5JQC9 854 aa13.75□□□□□ -0.21
VPS13A-204ENST00000376634 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.75□□□□□ -0.21
VPS13A-204ENST00000376634 CEP104O60308 925 aa13.75□□□□□ -0.21
VPS13A-204ENST00000376634 FAN1Q9Y2M0 1017 aa13.75□□□□□ -0.21
VPS13A-204ENST00000376634 KDM3AQ9Y4C1 1321 aa13.75□□□□□ -0.21
VPS13A-204ENST00000376634 GOLGA8CPA6NN73 597 aa13.75□□□□□ -0.21
VPS13A-204ENST00000376634 SLC1A4P43007 532 aa13.75□□□□□ -0.21
VPS13A-204ENST00000376634 METTL13Q8N6R0 699 aa13.75□□□□□ -0.21
VPS13A-204ENST00000376634 NELFBQ8WX92 580 aa13.75□□□□□ -0.21
VPS13A-204ENST00000376634 PDCD2Q16342 344 aaPredicted RBP13.74□□□□□ -0.21
VPS13A-204ENST00000376634 PPP2R5EQ16537 467 aa13.74□□□□□ -0.21
VPS13A-204ENST00000376634 JADE1Q6IE81 842 aa13.74□□□□□ -0.21
VPS13A-204ENST00000376634 MAPK8IP1Q9UQF2 711 aa13.74□□□□□ -0.21
VPS13A-204ENST00000376634 SCYL1Q96KG9 808 aa13.74□□□□□ -0.21
VPS13A-204ENST00000376634 MED10Q9BTT4 135 aa13.74□□□□□ -0.21
VPS13A-204ENST00000376634 ESYT2A0FGR8 921 aa13.74□□□□□ -0.21
VPS13A-204ENST00000376634 GCKP35557 465 aa13.74□□□□□ -0.21
VPS13A-204ENST00000376634 TMTC4Q5T4D3 741 aa13.74□□□□□ -0.21
VPS13A-204ENST00000376634 CCDC84Q86UT8 332 aaPredicted RBP13.74□□□□□ -0.21
VPS13A-204ENST00000376634 TMTC1Q8IUR5 882 aa13.74□□□□□ -0.21
VPS13A-204ENST00000376634 SPDL1Q96EA4 605 aa13.74□□□□□ -0.21
VPS13A-204ENST00000376634 RIC8AQ9NPQ8 531 aa13.74□□□□□ -0.21
VPS13A-204ENST00000376634 TEX14Q8IWB6 1497 aa13.74□□□□□ -0.21
VPS13A-204ENST00000376634 GNPATO15228 680 aa13.74□□□□□ -0.21
VPS13A-204ENST00000376634 CUTAO60888 179 aa13.74□□□□□ -0.21
VPS13A-204ENST00000376634 TNNI1P19237 187 aa13.74□□□□□ -0.21
VPS13A-204ENST00000376634 THEGQ9P2T0 379 aa13.74□□□□□ -0.21
VPS13A-204ENST00000376634 STX2P32856 288 aa13.74□□□□□ -0.21
VPS13A-204ENST00000376634 POSTNQ15063 836 aa13.74□□□□□ -0.21
VPS13A-204ENST00000376634 PHLDB3Q6NSJ2 640 aa13.74□□□□□ -0.21
VPS13A-204ENST00000376634 MAEAQ7L5Y9 396 aa13.74□□□□□ -0.21
VPS13A-204ENST00000376634 EPS15L1Q9UBC2 864 aa13.74□□□□□ -0.21
VPS13A-204ENST00000376634 EXOC3O60645 756 aa13.74□□□□□ -0.21
VPS13A-204ENST00000376634 CD19P15391 556 aa13.74□□□□□ -0.21
VPS13A-204ENST00000376634 PHEXP78562 749 aa13.74□□□□□ -0.21
VPS13A-204ENST00000376634 SLC39A6Q13433 755 aa13.74□□□□□ -0.21
VPS13A-204ENST00000376634 MRPL46Q9H2W6 279 aaKnown RBP13.74□□□□□ -0.21
VPS13A-204ENST00000376634 NR1I2O75469 434 aa13.73□□□□□ -0.21
VPS13A-204ENST00000376634 NBPF14Q5TI25 921 aa13.73□□□□□ -0.21
VPS13A-204ENST00000376634 PA2G4Q9UQ80 394 aaKnown RBP13.73□□□□□ -0.21
VPS13A-204ENST00000376634 TRPC6Q9Y210 931 aa13.73□□□□□ -0.21
VPS13A-204ENST00000376634 FLT4P35916 1363 aa13.73□□□□□ -0.21
VPS13A-204ENST00000376634 GOLGA8QA0A0J9YX86 632 aa13.73□□□□□ -0.21
VPS13A-204ENST00000376634 GOLGA8OA6NCC3 632 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms