RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 SART3Q15020 963 aaKnown RBP18.62■□□□□ 0.57
SDC4-201ENST00000372733 PUM3Q15397 648 aaKnown RBP18.62■□□□□ 0.57
SDC4-201ENST00000372733 CDKAL1Q5VV42 579 aa18.62■□□□□ 0.57
SDC4-201ENST00000372733 STAG1Q8WVM7 1258 aa18.62■□□□□ 0.57
SDC4-201ENST00000372733 VPS54Q9P1Q0 977 aa18.62■□□□□ 0.57
SDC4-201ENST00000372733 hCG_1642624A0A1W2PR95 340 aa18.62■□□□□ 0.57
SDC4-201ENST00000372733 WNT7AO00755 349 aa18.62■□□□□ 0.57
SDC4-201ENST00000372733 MAP2K7O14733 419 aa18.62■□□□□ 0.57
SDC4-201ENST00000372733 FXR1P51114 621 aaKnown RBP eCLIP18.62■□□□□ 0.57
SDC4-201ENST00000372733 MAP3K12Q12852 859 aa18.62■□□□□ 0.57
SDC4-201ENST00000372733 DPYDQ12882 1025 aa18.62■□□□□ 0.57
SDC4-201ENST00000372733 PAGE5Q96GU1 130 aa18.62■□□□□ 0.57
SDC4-201ENST00000372733 CDC5LQ99459 802 aaKnown RBP18.62■□□□□ 0.57
SDC4-201ENST00000372733 TRMT112Q9UI30 125 aaKnown RBP18.62■□□□□ 0.57
SDC4-201ENST00000372733 TOGARAM1Q9Y4F4 1720 aa18.61■□□□□ 0.57
SDC4-201ENST00000372733 TRIM75PA6NK02 468 aa18.61■□□□□ 0.57
SDC4-201ENST00000372733 ABL1P00519 1130 aa18.61■□□□□ 0.57
SDC4-201ENST00000372733 GYPCP04921 128 aa18.61■□□□□ 0.57
SDC4-201ENST00000372733 CCT6AP40227 531 aaKnown RBP18.61■□□□□ 0.57
SDC4-201ENST00000372733 LMAN1P49257 510 aa18.61■□□□□ 0.57
SDC4-201ENST00000372733 MCM6Q14566 821 aa18.61■□□□□ 0.57
SDC4-201ENST00000372733 KIF4BQ2VIQ3 1234 aa18.61■□□□□ 0.57
SDC4-201ENST00000372733 SLC35F6Q8N357 371 aa18.61■□□□□ 0.57
SDC4-201ENST00000372733 FANCBQ8NB91 859 aa18.61■□□□□ 0.57
SDC4-201ENST00000372733 STAMQ92783 540 aa18.61■□□□□ 0.57
SDC4-201ENST00000372733 SYMPKQ92797 1274 aaKnown RBP18.61■□□□□ 0.57
SDC4-201ENST00000372733 NAA15Q9BXJ9 866 aaKnown RBP18.61■□□□□ 0.57
SDC4-201ENST00000372733 SUGCTQ9HAC7 445 aa18.61■□□□□ 0.57
SDC4-201ENST00000372733 AATFQ9NY61 560 aaKnown RBP eCLIP18.61■□□□□ 0.57
SDC4-201ENST00000372733 SLC4A4Q9Y6R1 1079 aa18.61■□□□□ 0.57
SDC4-201ENST00000372733 ERICH2A1L162 156 aa18.61■□□□□ 0.57
SDC4-201ENST00000372733 MUM1L1Q5H9M0 696 aa18.61■□□□□ 0.57
SDC4-201ENST00000372733 MIGA1Q8NAN2 632 aa18.61■□□□□ 0.57
SDC4-201ENST00000372733 LPIN2Q92539 896 aa18.61■□□□□ 0.57
SDC4-201ENST00000372733 PDE11AQ9HCR9 933 aa18.61■□□□□ 0.57
SDC4-201ENST00000372733 ADAM21Q9UKJ8 722 aa18.61■□□□□ 0.57
SDC4-201ENST00000372733 SHANK3Q9BYB0 1731 aa18.6■□□□□ 0.57
SDC4-201ENST00000372733 PRDM1O75626 825 aa18.6■□□□□ 0.57
SDC4-201ENST00000372733 FGFR2P21802 821 aa18.6■□□□□ 0.57
SDC4-201ENST00000372733 ZSCAN26Q16670 478 aa18.6■□□□□ 0.57
SDC4-201ENST00000372733 BEND6Q5SZJ8 279 aaPredicted RBP18.6■□□□□ 0.57
SDC4-201ENST00000372733 RASGRP2Q7LDG7 609 aa18.6■□□□□ 0.57
SDC4-201ENST00000372733 CTNND2Q9UQB3 1225 aa18.6■□□□□ 0.57
SDC4-201ENST00000372733 SH3RF1Q7Z6J0 888 aa18.6■□□□□ 0.57
SDC4-201ENST00000372733 CEP112Q8N8E3 955 aa18.6■□□□□ 0.57
SDC4-201ENST00000372733 CCDC196A0A1B0GTZ2 297 aa18.59■□□□□ 0.57
SDC4-201ENST00000372733 PPP1R3GB7ZBB8 358 aa18.59■□□□□ 0.57
SDC4-201ENST00000372733 SMIM22K7EJ46 135 aa18.59■□□□□ 0.57
SDC4-201ENST00000372733 RHOXF2BP0C7M4 288 aa18.59■□□□□ 0.57
SDC4-201ENST00000372733 CDC25AP30304 524 aa18.59■□□□□ 0.57
SDC4-201ENST00000372733 NOM1Q5C9Z4 860 aaKnown RBP18.59■□□□□ 0.57
SDC4-201ENST00000372733 RHOXF2Q9BQY4 288 aa18.59■□□□□ 0.57
SDC4-201ENST00000372733 COL5A2P05997 1499 aaPredicted RBP18.59■□□□□ 0.57
SDC4-201ENST00000372733 CTAGE9A4FU28 777 aa18.59■□□□□ 0.57
SDC4-201ENST00000372733 WWC2Q6AWC2 1192 aa18.59■□□□□ 0.57
SDC4-201ENST00000372733 AK7Q96M32 723 aa18.59■□□□□ 0.57
SDC4-201ENST00000372733 ERVK-24P63145 666 aa18.58■□□□□ 0.57
SDC4-201ENST00000372733 MSANTD4Q8NCY6 345 aa18.58■□□□□ 0.57
SDC4-201ENST00000372733 EXOC4Q96A65 974 aa18.58■□□□□ 0.57
SDC4-201ENST00000372733 UBAC1Q9BSL1 405 aa18.58■□□□□ 0.57
SDC4-201ENST00000372733 NACAP1Q9BZK3 213 aa18.58■□□□□ 0.57
SDC4-201ENST00000372733 ABCB6Q9NP58 842 aa18.58■□□□□ 0.57
SDC4-201ENST00000372733 MYH3P11055 1940 aa18.58■□□□□ 0.57
SDC4-201ENST00000372733 FILIP1LQ4L180 1135 aa18.58■□□□□ 0.56
SDC4-201ENST00000372733 CNGA4Q8IV77 575 aa18.58■□□□□ 0.56
SDC4-201ENST00000372733 VPS18Q9P253 973 aa18.58■□□□□ 0.56
SDC4-201ENST00000372733 RAB21Q9UL25 225 aa18.58■□□□□ 0.56
SDC4-201ENST00000372733 PDE8AO60658 829 aa18.57■□□□□ 0.56
SDC4-201ENST00000372733 N4BP1O75113 896 aaKnown RBP18.57■□□□□ 0.56
SDC4-201ENST00000372733 STARD3NLO95772 234 aa18.57■□□□□ 0.56
SDC4-201ENST00000372733 SLC5A1P13866 664 aa18.57■□□□□ 0.56
SDC4-201ENST00000372733 HNRNPLLQ8WVV9 542 aaKnown RBP18.57■□□□□ 0.56
SDC4-201ENST00000372733 PIGBQ92521 554 aa18.57■□□□□ 0.56
SDC4-201ENST00000372733 CTAGE1Q96RT6 745 aa18.57■□□□□ 0.56
SDC4-201ENST00000372733 TNKSO95271 1327 aa18.57■□□□□ 0.56
SDC4-201ENST00000372733 VGLL3A8MV65 326 aa18.57■□□□□ 0.56
SDC4-201ENST00000372733 RNF225M0QZC1 329 aaPredicted RBP18.57■□□□□ 0.56
SDC4-201ENST00000372733 USP5P45974 858 aa18.57■□□□□ 0.56
SDC4-201ENST00000372733 VSNL1P62760 191 aa18.57■□□□□ 0.56
SDC4-201ENST00000372733 BLZF1Q9H2G9 400 aa18.57■□□□□ 0.56
SDC4-201ENST00000372733 FEZ2Q9UHY8 353 aaPredicted RBP18.57■□□□□ 0.56
SDC4-201ENST00000372733 DOCK2Q92608 1830 aa18.57■□□□□ 0.56
SDC4-201ENST00000372733 LRP5O75197 1615 aa18.57■□□□□ 0.56
SDC4-201ENST00000372733 KRT2P35908 639 aa18.56■□□□□ 0.56
SDC4-201ENST00000372733 AKAP17AQ02040 695 aaKnown RBP18.56■□□□□ 0.56
SDC4-201ENST00000372733 KRT31Q15323 416 aa18.56■□□□□ 0.56
SDC4-201ENST00000372733 PKN1Q16512 942 aa18.56■□□□□ 0.56
SDC4-201ENST00000372733 HDXQ7Z353 690 aa18.56■□□□□ 0.56
SDC4-201ENST00000372733 RNF26Q9BY78 433 aaPredicted RBP18.56■□□□□ 0.56
SDC4-201ENST00000372733 TTF2Q9UNY4 1162 aaKnown RBP18.56■□□□□ 0.56
SDC4-201ENST00000372733 XDHP47989 1333 aa18.56■□□□□ 0.56
SDC4-201ENST00000372733 POTEB2H3BUK9 544 aa18.56■□□□□ 0.56
SDC4-201ENST00000372733 PPARAQ07869 468 aa18.56■□□□□ 0.56
SDC4-201ENST00000372733 ZNF174Q15697 407 aa18.56■□□□□ 0.56
SDC4-201ENST00000372733 GSDMAQ96QA5 445 aa18.56■□□□□ 0.56
SDC4-201ENST00000372733 NAPGQ99747 312 aaPredicted RBP18.56■□□□□ 0.56
SDC4-201ENST00000372733 BCL9LQ86UU0 1499 aa18.56■□□□□ 0.56
SDC4-201ENST00000372733 MROH5Q6ZUA9 1318 aa18.56■□□□□ 0.56
SDC4-201ENST00000372733 MINDY4BA8MYZ0 360 aa18.55■□□□□ 0.56
SDC4-201ENST00000372733 PLEKHA8P1O95397 391 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms