RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 KCNJ14Q9UNX9 436 aa12.73□□□□□ -0.37
PTPRF-203ENST00000372407 ZNF532Q9HCE3 1301 aa12.73□□□□□ -0.37
PTPRF-203ENST00000372407 ZNF500O60304 480 aaPredicted RBP12.73□□□□□ -0.37
PTPRF-203ENST00000372407 RNASE9P60153 205 aaKnown RBP12.73□□□□□ -0.37
PTPRF-203ENST00000372407 LACTBP83111 547 aaPredicted RBP12.73□□□□□ -0.37
PTPRF-203ENST00000372407 WDR44Q5JSH3 913 aa12.73□□□□□ -0.37
PTPRF-203ENST00000372407 EDC3Q96F86 508 aaKnown RBP12.73□□□□□ -0.37
PTPRF-203ENST00000372407 SAP30BPQ9UHR5 308 aaKnown RBP12.73□□□□□ -0.37
PTPRF-203ENST00000372407 WWC3Q9ULE0 1092 aa12.73□□□□□ -0.37
PTPRF-203ENST00000372407 AFF2P51816 1311 aa12.73□□□□□ -0.37
PTPRF-203ENST00000372407 CEP170BQ9Y4F5 1589 aaPredicted RBP12.73□□□□□ -0.37
PTPRF-203ENST00000372407 ALKQ9UM73 1620 aa12.73□□□□□ -0.37
PTPRF-203ENST00000372407 STX10O60499 249 aa12.73□□□□□ -0.37
PTPRF-203ENST00000372407 ERCC5P28715 1186 aaPredicted RBP12.73□□□□□ -0.37
PTPRF-203ENST00000372407 CEP128Q6ZU80 1094 aa12.73□□□□□ -0.37
PTPRF-203ENST00000372407 ZNF365Q70YC5 407 aa12.73□□□□□ -0.37
PTPRF-203ENST00000372407 DPH6Q7L8W6 267 aa12.73□□□□□ -0.37
PTPRF-203ENST00000372407 EAF2Q96CJ1 260 aaPredicted RBP12.73□□□□□ -0.37
PTPRF-203ENST00000372407 CCDC51Q96ER9 411 aa12.73□□□□□ -0.37
PTPRF-203ENST00000372407 USP28Q96RU2 1077 aa12.73□□□□□ -0.37
PTPRF-203ENST00000372407 PARP3Q9Y6F1 533 aa12.73□□□□□ -0.37
PTPRF-203ENST00000372407 GOLGA6BA6NDN3 693 aa12.73□□□□□ -0.37
PTPRF-203ENST00000372407 GIGYF1O75420 1035 aaPredicted RBP12.73□□□□□ -0.37
PTPRF-203ENST00000372407 INTS8Q75QN2 995 aaKnown RBP12.73□□□□□ -0.37
PTPRF-203ENST00000372407 IFT74Q96LB3 600 aa12.73□□□□□ -0.37
PTPRF-203ENST00000372407 LZTS2Q9BRK4 669 aa12.73□□□□□ -0.37
PTPRF-203ENST00000372407 FAM169AQ9Y6X4 670 aa12.73□□□□□ -0.37
PTPRF-203ENST00000372407 PPRC1Q5VV67 1664 aaKnown RBP12.72□□□□□ -0.37
PTPRF-203ENST00000372407 ATP7BP35670 1465 aa12.72□□□□□ -0.37
PTPRF-203ENST00000372407 ARL1P40616 181 aaPredicted RBP12.72□□□□□ -0.37
PTPRF-203ENST00000372407 SMTNP53814 917 aa12.72□□□□□ -0.37
PTPRF-203ENST00000372407 PPFIA1Q13136 1202 aa12.72□□□□□ -0.37
PTPRF-203ENST00000372407 PAK2Q13177 524 aa12.72□□□□□ -0.37
PTPRF-203ENST00000372407 BEND3Q5T5X7 828 aa12.72□□□□□ -0.37
PTPRF-203ENST00000372407 FAM196AQ6ZSG2 479 aa12.72□□□□□ -0.37
PTPRF-203ENST00000372407 KRT27Q7Z3Y8 459 aa12.72□□□□□ -0.37
PTPRF-203ENST00000372407 TRMT44Q8IYL2 757 aaKnown RBP12.72□□□□□ -0.37
PTPRF-203ENST00000372407 STAMQ92783 540 aa12.72□□□□□ -0.37
PTPRF-203ENST00000372407 RPGRIP1Q96KN7 1286 aa12.72□□□□□ -0.37
PTPRF-203ENST00000372407 TRIM7Q9C029 511 aa12.72□□□□□ -0.37
PTPRF-203ENST00000372407 ZSWIM6Q9HCJ5 1215 aa12.72□□□□□ -0.37
PTPRF-203ENST00000372407 PALD1Q9ULE6 856 aa12.72□□□□□ -0.37
PTPRF-203ENST00000372407 CEP104O60308 925 aa12.72□□□□□ -0.37
PTPRF-203ENST00000372407 ARID4AP29374 1257 aaPredicted RBP12.72□□□□□ -0.37
PTPRF-203ENST00000372407 PPFIBP2Q8ND30 876 aa12.72□□□□□ -0.37
PTPRF-203ENST00000372407 UTP11Q9Y3A2 253 aaKnown RBP12.72□□□□□ -0.37
PTPRF-203ENST00000372407 FLOT1O75955 427 aa12.72□□□□□ -0.37
PTPRF-203ENST00000372407 KLHL30Q0D2K2 578 aa12.72□□□□□ -0.37
PTPRF-203ENST00000372407 UBL4BQ8N7F7 174 aa12.72□□□□□ -0.37
PTPRF-203ENST00000372407 SPATA5Q8NB90 893 aa12.72□□□□□ -0.37
PTPRF-203ENST00000372407 OR8K1Q8NGG5 319 aa12.72□□□□□ -0.37
PTPRF-203ENST00000372407 NUCKS1Q9H1E3 243 aaKnown RBP12.72□□□□□ -0.37
PTPRF-203ENST00000372407 TSKSQ9UJT2 592 aa12.72□□□□□ -0.37
PTPRF-203ENST00000372407 MADDQ8WXG6 1647 aa12.72□□□□□ -0.37
PTPRF-203ENST00000372407 NEURL1BA8MQ27 555 aa12.71□□□□□ -0.37
PTPRF-203ENST00000372407 ETF1P62495 437 aaKnown RBP12.71□□□□□ -0.37
PTPRF-203ENST00000372407 SP4Q02446 784 aa12.71□□□□□ -0.37
PTPRF-203ENST00000372407 CTDSPL2Q05D32 466 aa12.71□□□□□ -0.37
PTPRF-203ENST00000372407 GBP6Q6ZN66 633 aa12.71□□□□□ -0.37
PTPRF-203ENST00000372407 ZNF354CQ86Y25 554 aa12.71□□□□□ -0.37
PTPRF-203ENST00000372407 CNBD1Q8NA66 436 aa12.71□□□□□ -0.37
PTPRF-203ENST00000372407 NELFBQ8WX92 580 aa12.71□□□□□ -0.37
PTPRF-203ENST00000372407 IQCDQ96DY2 449 aa12.71□□□□□ -0.37
PTPRF-203ENST00000372407 BCL2L12Q9HB09 334 aa12.71□□□□□ -0.37
PTPRF-203ENST00000372407 WDR17Q8IZU2 1322 aa12.71□□□□□ -0.37
PTPRF-203ENST00000372407 ARHGEF35A5YM69 484 aa12.71□□□□□ -0.37
PTPRF-203ENST00000372407 CALUO43852 315 aaPredicted RBP12.71□□□□□ -0.37
PTPRF-203ENST00000372407 TAF5LO75529 589 aa12.71□□□□□ -0.37
PTPRF-203ENST00000372407 PFKFB1P16118 471 aa12.71□□□□□ -0.37
PTPRF-203ENST00000372407 CFAP221Q4G0U5 840 aa12.71□□□□□ -0.37
PTPRF-203ENST00000372407 DNAJC10Q8IXB1 793 aa12.71□□□□□ -0.37
PTPRF-203ENST00000372407 SEC62Q99442 399 aaKnown RBP12.71□□□□□ -0.37
PTPRF-203ENST00000372407 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.71□□□□□ -0.372e-6■■■■□ 20.9
PTPRF-203ENST00000372407 SERTAD1Q9UHV2 236 aa12.71□□□□□ -0.37
PTPRF-203ENST00000372407 NR1I2O75469 434 aa12.71□□□□□ -0.38
PTPRF-203ENST00000372407 UFL1O94874 794 aa12.71□□□□□ -0.38
PTPRF-203ENST00000372407 KRT5P13647 590 aa12.71□□□□□ -0.38
PTPRF-203ENST00000372407 INPP5BP32019 993 aa12.71□□□□□ -0.38
PTPRF-203ENST00000372407 PTH1RQ03431 593 aa12.71□□□□□ -0.38
PTPRF-203ENST00000372407 RAB3IL1Q8TBN0 382 aa12.71□□□□□ -0.38
PTPRF-203ENST00000372407 JDP2Q8WYK2 163 aa12.71□□□□□ -0.38
PTPRF-203ENST00000372407 SWAP70Q9UH65 585 aa12.71□□□□□ -0.38
PTPRF-203ENST00000372407 ZC3H13Q5T200 1668 aaKnown RBP12.71□□□□□ -0.38
PTPRF-203ENST00000372407 A0A0D9SFI3 127 aa12.71□□□□□ -0.38
PTPRF-203ENST00000372407 CCDC14Q49A88 953 aa12.71□□□□□ -0.38
PTPRF-203ENST00000372407 SND1Q7KZF4 910 aaKnown RBP eCLIP12.71□□□□□ -0.38
PTPRF-203ENST00000372407 CCDC110Q8TBZ0 833 aa12.71□□□□□ -0.38
PTPRF-203ENST00000372407 MRFAP1L1Q96HT8 127 aa12.71□□□□□ -0.38
PTPRF-203ENST00000372407 AATFQ9NY61 560 aaKnown RBP eCLIP12.71□□□□□ -0.38
PTPRF-203ENST00000372407 VPS54Q9P1Q0 977 aa12.71□□□□□ -0.38
PTPRF-203ENST00000372407 STK24Q9Y6E0 443 aa12.71□□□□□ -0.38
PTPRF-203ENST00000372407 MROH5Q6ZUA9 1318 aa12.7□□□□□ -0.38
PTPRF-203ENST00000372407 NDC80O14777 642 aa12.7□□□□□ -0.38
PTPRF-203ENST00000372407 RPS6KA1Q15418 735 aa12.7□□□□□ -0.38
PTPRF-203ENST00000372407 DYMQ7RTS9 669 aa12.7□□□□□ -0.38
PTPRF-203ENST00000372407 ZNF654Q8IZM8 581 aa12.7□□□□□ -0.38
PTPRF-203ENST00000372407 DNM3Q9UQ16 869 aa12.7□□□□□ -0.38
PTPRF-203ENST00000372407 PFKFB2O60825 505 aa12.7□□□□□ -0.38
PTPRF-203ENST00000372407 ADCY7P51828 1080 aa12.7□□□□□ -0.38
PTPRF-203ENST00000372407 MAP7D1Q3KQU3 841 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms