RNA–Protein interactions for RNA: ENST00000368531.6

TPM3-211, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 1,115 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-211ENST00000368531 PPIL2Q13356 520 aa16.42■□□□□ 0.22
TPM3-211ENST00000368531 ZYXQ15942 572 aaKnown RBP16.42■□□□□ 0.22
TPM3-211ENST00000368531 RALYLQ86SE5 291 aaKnown RBP16.42■□□□□ 0.22
TPM3-211ENST00000368531 NEDD1Q8NHV4 660 aa16.42■□□□□ 0.22
TPM3-211ENST00000368531 ZIC5Q96T25 663 aa16.42■□□□□ 0.22
TPM3-211ENST00000368531 CNNM2Q9H8M5 875 aa16.42■□□□□ 0.22
TPM3-211ENST00000368531 AS3MTQ9HBK9 375 aa16.42■□□□□ 0.22
TPM3-211ENST00000368531 GINM1Q9NU53 330 aa16.42■□□□□ 0.22
TPM3-211ENST00000368531 AFG3L2Q9Y4W6 797 aa16.42■□□□□ 0.22
TPM3-211ENST00000368531 GREB1LQ9C091 1923 aaPredicted RBP16.42■□□□□ 0.22
TPM3-211ENST00000368531 EIF5BO60841 1220 aaKnown RBP16.41■□□□□ 0.22
TPM3-211ENST00000368531 EEF2P13639 858 aaKnown RBP16.41■□□□□ 0.22
TPM3-211ENST00000368531 ZKSCAN1P17029 563 aaPredicted RBP16.41■□□□□ 0.22
TPM3-211ENST00000368531 ICA1Q05084 483 aa16.41■□□□□ 0.22
TPM3-211ENST00000368531 CHST3Q7LGC8 479 aa16.41■□□□□ 0.22
TPM3-211ENST00000368531 ZNF280CQ8ND82 737 aa16.41■□□□□ 0.22
TPM3-211ENST00000368531 NCOA7Q8NI08 942 aa16.41■□□□□ 0.22
TPM3-211ENST00000368531 ACER1Q8TDN7 264 aa16.41■□□□□ 0.22
TPM3-211ENST00000368531 CEP95Q96GE4 821 aa16.41■□□□□ 0.22
TPM3-211ENST00000368531 FEZ1Q99689 392 aa16.41■□□□□ 0.22
TPM3-211ENST00000368531 KANSL2Q9H9L4 492 aa16.41■□□□□ 0.22
TPM3-211ENST00000368531 ZSWIM5Q9P217 1185 aa16.41■□□□□ 0.22
TPM3-211ENST00000368531 PTPRFP10586 1907 aa16.41■□□□□ 0.22
TPM3-211ENST00000368531 ZBTB48P10074 688 aaPredicted RBP16.4■□□□□ 0.22
TPM3-211ENST00000368531 KIF23Q02241 960 aaPredicted RBP16.4■□□□□ 0.22
TPM3-211ENST00000368531 DGKZQ13574 1117 aa16.4■□□□□ 0.22
TPM3-211ENST00000368531 ADCK5Q3MIX3 580 aa16.4■□□□□ 0.22
TPM3-211ENST00000368531 CYB5R4Q7L1T6 521 aa16.4■□□□□ 0.22
TPM3-211ENST00000368531 ARHGEF10LQ9HCE6 1279 aa16.4■□□□□ 0.22
TPM3-211ENST00000368531 IL17RBQ9NRM6 502 aa16.4■□□□□ 0.22
TPM3-211ENST00000368531 CLIP2Q9UDT6 1046 aa16.4■□□□□ 0.22
TPM3-211ENST00000368531 SNX14Q9Y5W7 946 aa16.4■□□□□ 0.22
TPM3-211ENST00000368531 EPB41L2O43491 1005 aaKnown RBP16.39■□□□□ 0.21
TPM3-211ENST00000368531 RAD21O60216 631 aa16.39■□□□□ 0.21
TPM3-211ENST00000368531 SNAPC2Q13487 334 aa16.39■□□□□ 0.21
TPM3-211ENST00000368531 MTMR2Q13614 643 aa16.39■□□□□ 0.21
TPM3-211ENST00000368531 GADL1Q6ZQY3 521 aa16.39■□□□□ 0.21
TPM3-211ENST00000368531 SIAH1Q8IUQ4 282 aa16.39■□□□□ 0.21
TPM3-211ENST00000368531 CHMP4CQ96CF2 233 aa16.39■□□□□ 0.21
TPM3-211ENST00000368531 WDR18Q9BV38 432 aa16.39■□□□□ 0.21
TPM3-211ENST00000368531 STX8Q9UNK0 236 aa16.39■□□□□ 0.21
TPM3-211ENST00000368531 CCL15-CCL14A0A0B4J2E2 113 aa16.38■□□□□ 0.21
TPM3-211ENST00000368531 IGKV6D-41A0A0C4DH26 115 aa16.38■□□□□ 0.21
TPM3-211ENST00000368531 A0A1W2PRG0 241 aa16.38■□□□□ 0.21
TPM3-211ENST00000368531 USP17L10C9JJH3 530 aa16.38■□□□□ 0.21
TPM3-211ENST00000368531 GTF2A2P52657 109 aa16.38■□□□□ 0.21
TPM3-211ENST00000368531 HMGCS2P54868 508 aa16.38■□□□□ 0.21
TPM3-211ENST00000368531 NOGQ13253 232 aa16.38■□□□□ 0.21
TPM3-211ENST00000368531 COL9A3Q14050 684 aaPredicted RBP16.38■□□□□ 0.21
TPM3-211ENST00000368531 CCL15Q16663 113 aa16.38■□□□□ 0.21
TPM3-211ENST00000368531 IQCA1Q86XH1 822 aa16.38■□□□□ 0.21
TPM3-211ENST00000368531 KCNB2Q92953 911 aa16.38■□□□□ 0.21
TPM3-211ENST00000368531 JAKMIP1Q96N16 626 aaKnown RBP16.38■□□□□ 0.21
TPM3-211ENST00000368531 NEK1Q96PY6 1258 aa16.38■□□□□ 0.21
TPM3-211ENST00000368531 TBC1D2Q9BYX2 928 aa16.38■□□□□ 0.21
TPM3-211ENST00000368531 RNF39Q9H2S5 420 aa16.38■□□□□ 0.21
TPM3-211ENST00000368531 MTMR4Q9NYA4 1195 aa16.38■□□□□ 0.21
TPM3-211ENST00000368531 MTMR7Q9Y216 660 aa16.38■□□□□ 0.21
TPM3-211ENST00000368531 PLIN4Q96Q06 1357 aa16.38■□□□□ 0.21
TPM3-211ENST00000368531 MANSC4A6NHS7 340 aaPredicted RBP16.37■□□□□ 0.21
TPM3-211ENST00000368531 CXCL11O14625 94 aa16.37■□□□□ 0.21
TPM3-211ENST00000368531 TTLL1O95922 423 aa16.37■□□□□ 0.21
TPM3-211ENST00000368531 CPA1P15085 419 aa16.37■□□□□ 0.21
TPM3-211ENST00000368531 BACE1P56817 501 aa16.37■□□□□ 0.21
TPM3-211ENST00000368531 KRT32Q14532 448 aa16.37■□□□□ 0.21
TPM3-211ENST00000368531 TSGA10IPQ3SY00 556 aa16.37■□□□□ 0.21
TPM3-211ENST00000368531 MB21D2Q8IYB1 491 aaPredicted RBP16.37■□□□□ 0.21
TPM3-211ENST00000368531 LRRC47Q8N1G4 583 aaKnown RBP16.37■□□□□ 0.21
TPM3-211ENST00000368531 MS4A4AQ96JQ5 239 aa16.37■□□□□ 0.21
TPM3-211ENST00000368531 UBAC1Q9BSL1 405 aa16.37■□□□□ 0.21
TPM3-211ENST00000368531 NYAP2Q9P242 653 aa16.37■□□□□ 0.21
TPM3-211ENST00000368531 KCNH4Q9UQ05 1017 aa16.37■□□□□ 0.21
TPM3-211ENST00000368531 IFIT3O14879 490 aaKnown RBP16.36■□□□□ 0.21
TPM3-211ENST00000368531 PRC1O43663 620 aa16.36■□□□□ 0.21
TPM3-211ENST00000368531 CETPP11597 493 aa16.36■□□□□ 0.21
TPM3-211ENST00000368531 ANTXR2P58335 489 aa16.36■□□□□ 0.21
TPM3-211ENST00000368531 USP17L2Q6R6M4 530 aa16.36■□□□□ 0.21
TPM3-211ENST00000368531 DNAJC5GQ8N7S2 189 aa16.36■□□□□ 0.21
TPM3-211ENST00000368531 TCEANC2Q96MN5 208 aa16.36■□□□□ 0.21
TPM3-211ENST00000368531 ZSCAN10Q96SZ4 725 aaPredicted RBP16.36■□□□□ 0.21
TPM3-211ENST00000368531 LRRC2Q9BYS8 371 aa16.36■□□□□ 0.21
TPM3-211ENST00000368531 BACH2Q9BYV9 841 aa16.36■□□□□ 0.21
TPM3-211ENST00000368531 TCP11L1Q9NUJ3 509 aa16.36■□□□□ 0.21
TPM3-211ENST00000368531 TMOD4Q9NZQ9 345 aa16.36■□□□□ 0.21
TPM3-211ENST00000368531 A0A0G2JLL6 359 aaPredicted RBP16.35■□□□□ 0.21
TPM3-211ENST00000368531 C19orf81C9J6K1 198 aa16.35■□□□□ 0.21
TPM3-211ENST00000368531 MCM5P33992 734 aa16.35■□□□□ 0.21
TPM3-211ENST00000368531 PRRT2Q7Z6L0 340 aaPredicted RBP16.35■□□□□ 0.21
TPM3-211ENST00000368531 SPICE1Q8N0Z3 855 aa16.35■□□□□ 0.21
TPM3-211ENST00000368531 BRI3BPQ8WY22 251 aa16.35■□□□□ 0.21
TPM3-211ENST00000368531 KIAA1683Q9H0B3 1180 aa16.35■□□□□ 0.21
TPM3-211ENST00000368531 SH2D4AQ9H788 454 aa16.35■□□□□ 0.21
TPM3-211ENST00000368531 UPF2Q9HAU5 1272 aaKnown RBP16.35■□□□□ 0.21
TPM3-211ENST00000368531 EMILIN3Q9NT22 766 aa16.35■□□□□ 0.21
TPM3-211ENST00000368531 TMX2Q9Y320 296 aa16.35■□□□□ 0.21
TPM3-211ENST00000368531 TNKSO95271 1327 aa16.35■□□□□ 0.21
TPM3-211ENST00000368531 ERICH2A1L162 156 aa16.34■□□□□ 0.21
TPM3-211ENST00000368531 CASTP20810 708 aaKnown RBP16.34■□□□□ 0.21
TPM3-211ENST00000368531 MAP2K2P36507 400 aa16.34■□□□□ 0.21
TPM3-211ENST00000368531 SREBF2Q12772 1141 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms