RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 USP17L19D6RCP7 530 aa16.96■□□□□ 0.31
VPS29-201ENST00000360579 USP17L20D6RJB6 530 aa16.96■□□□□ 0.31
VPS29-201ENST00000360579 USP14P54578 494 aa16.96■□□□□ 0.31
VPS29-201ENST00000360579 USP17L24Q0WX57 530 aa16.96■□□□□ 0.31
VPS29-201ENST00000360579 CERS3Q8IU89 383 aa16.96■□□□□ 0.31
VPS29-201ENST00000360579 FEZ1Q99689 392 aa16.96■□□□□ 0.31
VPS29-201ENST00000360579 COL25A1Q9BXS0 654 aaPredicted RBP16.96■□□□□ 0.31
VPS29-201ENST00000360579 SENP6Q9GZR1 1112 aaPredicted RBP16.96■□□□□ 0.31
VPS29-201ENST00000360579 GPR108Q9NPR9 543 aa16.96■□□□□ 0.31
VPS29-201ENST00000360579 DDX20Q9UHI6 824 aaKnown RBP16.96■□□□□ 0.31
VPS29-201ENST00000360579 DNAH12Q6ZR08 3092 aa16.96■□□□□ 0.31
VPS29-201ENST00000360579 SLC15A5A6NIM6 579 aa16.95■□□□□ 0.3
VPS29-201ENST00000360579 LPAR1Q92633 364 aa16.95■□□□□ 0.3
VPS29-201ENST00000360579 SNRKQ9NRH2 765 aa16.95■□□□□ 0.3
VPS29-201ENST00000360579 IVNS1ABPQ9Y6Y0 642 aa16.95■□□□□ 0.3
VPS29-201ENST00000360579 VCANP13611 3396 aa16.94■□□□□ 0.3
VPS29-201ENST00000360579 SIPA1L1O43166 1804 aa16.94■□□□□ 0.3
VPS29-201ENST00000360579 DNM1LO00429 736 aa16.94■□□□□ 0.3
VPS29-201ENST00000360579 IPO8O15397 1037 aaKnown RBP16.94■□□□□ 0.3
VPS29-201ENST00000360579 GH2P01242 217 aa16.94■□□□□ 0.3
VPS29-201ENST00000360579 HOXC6P09630 235 aa16.94■□□□□ 0.3
VPS29-201ENST00000360579 PTPREP23469 700 aa16.94■□□□□ 0.3
VPS29-201ENST00000360579 RARSP54136 660 aaKnown RBP16.94■□□□□ 0.3
VPS29-201ENST00000360579 ATP2B2Q01814 1243 aa16.94■□□□□ 0.3
VPS29-201ENST00000360579 SHROOM1Q2M3G4 852 aaPredicted RBP16.94■□□□□ 0.3
VPS29-201ENST00000360579 ZNF697Q5TEC3 545 aa16.94■□□□□ 0.3
VPS29-201ENST00000360579 WDR78Q5VTH9 848 aa16.94■□□□□ 0.3
VPS29-201ENST00000360579 LBX2Q6XYB7 198 aa16.94■□□□□ 0.3
VPS29-201ENST00000360579 ADGRA1Q86SQ6 560 aa16.94■□□□□ 0.3
VPS29-201ENST00000360579 ZNF512BQ96KM6 892 aaPredicted RBP16.94■□□□□ 0.3
VPS29-201ENST00000360579 GUCD1Q96NT3 240 aa16.94■□□□□ 0.3
VPS29-201ENST00000360579 SAP30BPQ9UHR5 308 aaKnown RBP16.94■□□□□ 0.3
VPS29-201ENST00000360579 MAST2Q6P0Q8 1798 aa16.94■□□□□ 0.3
VPS29-201ENST00000360579 CYP2E1P05181 493 aaPredicted RBP16.93■□□□□ 0.3
VPS29-201ENST00000360579 CNGA1P29973 690 aa16.93■□□□□ 0.3
VPS29-201ENST00000360579 TATDN1Q6P1N9 297 aa16.93■□□□□ 0.3
VPS29-201ENST00000360579 POTEEQ6S8J3 1075 aa16.93■□□□□ 0.3
VPS29-201ENST00000360579 CATSPERGQ6ZRH7 1159 aa16.93■□□□□ 0.3
VPS29-201ENST00000360579 PNMA6EA0A0J9YXQ4 647 aa16.92■□□□□ 0.3
VPS29-201ENST00000360579 CNMDO75829 334 aa16.92■□□□□ 0.3
VPS29-201ENST00000360579 GRB14Q14449 540 aa16.92■□□□□ 0.3
VPS29-201ENST00000360579 ZYXQ15942 572 aaKnown RBP16.92■□□□□ 0.3
VPS29-201ENST00000360579 TNNI3KQ59H18 835 aa16.92■□□□□ 0.3
VPS29-201ENST00000360579 ARRDC4Q8NCT1 418 aa16.92■□□□□ 0.3
VPS29-201ENST00000360579 KIAA1683Q9H0B3 1180 aa16.92■□□□□ 0.3
VPS29-201ENST00000360579 EHD4Q9H223 541 aa16.92■□□□□ 0.3
VPS29-201ENST00000360579 FLRT1Q9NZU1 646 aa16.92■□□□□ 0.3
VPS29-201ENST00000360579 SERPINB13Q9UIV8 391 aa16.92■□□□□ 0.3
VPS29-201ENST00000360579 FPGT-TNNI3KV9GXZ4 949 aa16.92■□□□□ 0.3
VPS29-201ENST00000360579 VCAM1P19320 739 aa16.91■□□□□ 0.3
VPS29-201ENST00000360579 ATN1P54259 1190 aaPredicted RBP16.91■□□□□ 0.3
VPS29-201ENST00000360579 RTP1P59025 263 aa16.91■□□□□ 0.3
VPS29-201ENST00000360579 OS9Q13438 667 aaPredicted RBP16.91■□□□□ 0.3
VPS29-201ENST00000360579 RAB3GAP1Q15042 981 aa16.91■□□□□ 0.3
VPS29-201ENST00000360579 TMED8Q6PL24 325 aaPredicted RBP16.91■□□□□ 0.3
VPS29-201ENST00000360579 DBNDD2Q9BQY9 259 aa16.91■□□□□ 0.3
VPS29-201ENST00000360579 CABP5Q9NP86 173 aa16.91■□□□□ 0.3
VPS29-201ENST00000360579 NDUFB9Q9Y6M9 179 aa16.91■□□□□ 0.3
VPS29-201ENST00000360579 CYP7A1P22680 504 aa16.9■□□□□ 0.3
VPS29-201ENST00000360579 USP5P45974 858 aa16.9■□□□□ 0.3
VPS29-201ENST00000360579 CERKLQ49MI3 558 aaPredicted RBP16.9■□□□□ 0.3
VPS29-201ENST00000360579 TTC6Q86TZ1 520 aa16.9■□□□□ 0.3
VPS29-201ENST00000360579 FAM161BQ96MY7 647 aa16.9■□□□□ 0.3
VPS29-201ENST00000360579 STRNO43815 780 aa16.89■□□□□ 0.29
VPS29-201ENST00000360579 CYP2C19P33261 490 aa16.89■□□□□ 0.29
VPS29-201ENST00000360579 ZAP70P43403 619 aa16.89■□□□□ 0.29
VPS29-201ENST00000360579 DYNLL1P63167 89 aaKnown RBP16.89■□□□□ 0.29
VPS29-201ENST00000360579 ABCB5Q2M3G0 1257 aa16.89■□□□□ 0.29
VPS29-201ENST00000360579 OLFML2BQ68BL8 750 aa16.89■□□□□ 0.29
VPS29-201ENST00000360579 DPP9Q86TI2 863 aa16.89■□□□□ 0.29
VPS29-201ENST00000360579 BTBD7Q9P203 1132 aa16.89■□□□□ 0.29
VPS29-201ENST00000360579 ATP11BQ9Y2G3 1177 aa16.89■□□□□ 0.29
VPS29-201ENST00000360579 SPTBN5Q9NRC6 3674 aaKnown RBP16.89■□□□□ 0.29
VPS29-201ENST00000360579 FOCADQ5VW36 1801 aa16.89■□□□□ 0.29
VPS29-201ENST00000360579 SPDYE16A6NNV3 312 aaPredicted RBP16.88■□□□□ 0.29
VPS29-201ENST00000360579 KBTBD13C9JR72 458 aa16.88■□□□□ 0.29
VPS29-201ENST00000360579 CYBAP13498 195 aa16.88■□□□□ 0.29
VPS29-201ENST00000360579 TRIM27P14373 513 aa16.88■□□□□ 0.29
VPS29-201ENST00000360579 NPLOC4Q8TAT6 608 aa16.88■□□□□ 0.29
VPS29-201ENST00000360579 RPAP3Q9H6T3 665 aaPredicted RBP16.88■□□□□ 0.29
VPS29-201ENST00000360579 PIH1D3Q9NQM4 214 aaKnown RBP16.88■□□□□ 0.29
VPS29-201ENST00000360579 SLC5A4Q9NY91 659 aa16.88■□□□□ 0.29
VPS29-201ENST00000360579 EYSQ5T1H1 3165 aa16.87■□□□□ 0.29
VPS29-201ENST00000360579 IDH1O75874 414 aaKnown RBP16.87■□□□□ 0.29
VPS29-201ENST00000360579 IGHA2P01877 340 aa16.87■□□□□ 0.29
VPS29-201ENST00000360579 SLC39A5Q6ZMH5 540 aa16.87■□□□□ 0.29
VPS29-201ENST00000360579 MIGA1Q8NAN2 632 aa16.87■□□□□ 0.29
VPS29-201ENST00000360579 CDX2Q99626 313 aaPredicted RBP16.87■□□□□ 0.29
VPS29-201ENST00000360579 HOXC10Q9NYD6 342 aa16.87■□□□□ 0.29
VPS29-201ENST00000360579 FRMPD3Q5JV73 1810 aa16.86■□□□□ 0.29
VPS29-201ENST00000360579 SEPT4O43236 478 aa16.86■□□□□ 0.29
VPS29-201ENST00000360579 COG2Q14746 738 aa16.86■□□□□ 0.29
VPS29-201ENST00000360579 GJC2Q5T442 439 aaPredicted RBP16.86■□□□□ 0.29
VPS29-201ENST00000360579 SHCBP1Q8NEM2 672 aa16.86■□□□□ 0.29
VPS29-201ENST00000360579 TRPV1Q8NER1 839 aa16.86■□□□□ 0.29
VPS29-201ENST00000360579 ACER1Q8TDN7 264 aa16.86■□□□□ 0.29
VPS29-201ENST00000360579 SSH3Q8TE77 659 aa16.86■□□□□ 0.29
VPS29-201ENST00000360579 PRDM5Q9NQX1 630 aaPredicted RBP16.86■□□□□ 0.29
VPS29-201ENST00000360579 CDK5RAP2Q96SN8 1893 aa16.86■□□□□ 0.29
VPS29-201ENST00000360579 SURF6O75683 361 aaKnown RBP16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms