RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 SMIM5Q71RC9 77 aa13.79□□□□□ -0.2
CLIP3-201ENST00000360535 CCDC24Q8N4L8 307 aa13.79□□□□□ -0.2
CLIP3-201ENST00000360535 ESR2Q92731 530 aa13.79□□□□□ -0.2
CLIP3-201ENST00000360535 SHISA4Q96DD7 197 aa13.79□□□□□ -0.2
CLIP3-201ENST00000360535 CDC5LQ99459 802 aaKnown RBP13.79□□□□□ -0.2
CLIP3-201ENST00000360535 SRRTQ9BXP5 876 aaKnown RBP13.79□□□□□ -0.2
CLIP3-201ENST00000360535 ARFGAP3Q9NP61 516 aa13.79□□□□□ -0.2
CLIP3-201ENST00000360535 NIP7Q9Y221 180 aaKnown RBP eCLIP13.79□□□□□ -0.2
CLIP3-201ENST00000360535 ABCC12Q96J65 1359 aa13.79□□□□□ -0.2
CLIP3-201ENST00000360535 KRT2P35908 639 aa13.79□□□□□ -0.2
CLIP3-201ENST00000360535 TBX2Q13207 712 aaPredicted RBP13.79□□□□□ -0.2
CLIP3-201ENST00000360535 WWC2Q6AWC2 1192 aa13.79□□□□□ -0.2
CLIP3-201ENST00000360535 PIK3AP1Q6ZUJ8 805 aa13.79□□□□□ -0.2
CLIP3-201ENST00000360535 PAGE5Q96GU1 130 aa13.79□□□□□ -0.2
CLIP3-201ENST00000360535 NUP88Q99567 741 aaPredicted RBP13.79□□□□□ -0.2
CLIP3-201ENST00000360535 TAB2Q9NYJ8 693 aa13.79□□□□□ -0.2
CLIP3-201ENST00000360535 SLAIN2Q9P270 581 aa13.79□□□□□ -0.2
CLIP3-201ENST00000360535 SOS2Q07890 1332 aaPredicted RBP13.79□□□□□ -0.2
CLIP3-201ENST00000360535 CCDC66A2RUB6 948 aa13.79□□□□□ -0.2
CLIP3-201ENST00000360535 CHRNDQ07001 517 aa13.79□□□□□ -0.2
CLIP3-201ENST00000360535 PTGDRQ13258 359 aa13.79□□□□□ -0.2
CLIP3-201ENST00000360535 NR1I3Q14994 352 aa13.79□□□□□ -0.2
CLIP3-201ENST00000360535 FILIP1LQ4L180 1135 aa13.79□□□□□ -0.2
CLIP3-201ENST00000360535 STAG1Q8WVM7 1258 aa13.79□□□□□ -0.2
CLIP3-201ENST00000360535 SPEF2Q9C093 1822 aa13.78□□□□□ -0.2
CLIP3-201ENST00000360535 COL5A2P05997 1499 aaPredicted RBP13.78□□□□□ -0.2
CLIP3-201ENST00000360535 FAM237AA0A1B0GTK4 181 aa13.78□□□□□ -0.2
CLIP3-201ENST00000360535 TUBB4AP04350 444 aa13.78□□□□□ -0.2
CLIP3-201ENST00000360535 VEGFAP15692 232 aaPredicted RBP13.78□□□□□ -0.2
CLIP3-201ENST00000360535 FGFR2P21802 821 aa13.78□□□□□ -0.2
CLIP3-201ENST00000360535 MAP3K9P80192 1104 aa13.78□□□□□ -0.2
CLIP3-201ENST00000360535 ALX1Q15699 326 aa13.78□□□□□ -0.2
CLIP3-201ENST00000360535 CATIPQ7Z7H3 387 aa13.78□□□□□ -0.2
CLIP3-201ENST00000360535 RNF41Q9H4P4 317 aaPredicted RBP13.78□□□□□ -0.2
CLIP3-201ENST00000360535 MRFAP1Q9Y605 127 aa13.78□□□□□ -0.2
CLIP3-201ENST00000360535 KIF5CO60282 957 aa13.78□□□□□ -0.2
CLIP3-201ENST00000360535 KCNQ4P56696 695 aa13.78□□□□□ -0.2
CLIP3-201ENST00000360535 SMC1AQ14683 1233 aaKnown RBP13.78□□□□□ -0.2
CLIP3-201ENST00000360535 CC2D1AQ6P1N0 951 aaPredicted RBP13.78□□□□□ -0.2
CLIP3-201ENST00000360535 GPIHBP1Q8IV16 184 aa13.78□□□□□ -0.2
CLIP3-201ENST00000360535 ENAHQ8N8S7 591 aaPredicted RBP13.78□□□□□ -0.2
CLIP3-201ENST00000360535 STK36Q9NRP7 1315 aa13.78□□□□□ -0.2
CLIP3-201ENST00000360535 LMTK3Q96Q04 1460 aa13.77□□□□□ -0.2
CLIP3-201ENST00000360535 VGLL3A8MV65 326 aa13.77□□□□□ -0.2
CLIP3-201ENST00000360535 SARSP49591 514 aaKnown RBP13.77□□□□□ -0.2
CLIP3-201ENST00000360535 NLRP5P59047 1200 aa13.77□□□□□ -0.2
CLIP3-201ENST00000360535 KANK3Q6NY19 840 aa13.77□□□□□ -0.2
CLIP3-201ENST00000360535 AEBP2Q6ZN18 517 aaPredicted RBP13.77□□□□□ -0.2
CLIP3-201ENST00000360535 GOLGA1Q92805 767 aa13.77□□□□□ -0.2
CLIP3-201ENST00000360535 PKD1L3Q7Z443 1732 aa13.77□□□□□ -0.2
CLIP3-201ENST00000360535 ZRANB2O95218 330 aaKnown RBP eCLIP13.77□□□□□ -0.21
CLIP3-201ENST00000360535 GTF2E1P29083 439 aaPredicted RBP13.77□□□□□ -0.21
CLIP3-201ENST00000360535 FXR1P51114 621 aaKnown RBP eCLIP13.77□□□□□ -0.21
CLIP3-201ENST00000360535 ZNF512BQ96KM6 892 aaPredicted RBP13.77□□□□□ -0.21
CLIP3-201ENST00000360535 SUGCTQ9HAC7 445 aa13.77□□□□□ -0.21
CLIP3-201ENST00000360535 TBC1D8O95759 1140 aa13.77□□□□□ -0.21
CLIP3-201ENST00000360535 ATP6V1AP38606 617 aa13.77□□□□□ -0.21
CLIP3-201ENST00000360535 CHMP4BP1P59074 171 aa13.77□□□□□ -0.21
CLIP3-201ENST00000360535 DPYDQ12882 1025 aa13.77□□□□□ -0.21
CLIP3-201ENST00000360535 SPATA1Q5VX52 437 aa13.77□□□□□ -0.21
CLIP3-201ENST00000360535 TMTC2Q8N394 836 aa13.77□□□□□ -0.21
CLIP3-201ENST00000360535 SLF1Q9BQI6 1058 aa13.77□□□□□ -0.21
CLIP3-201ENST00000360535 TFR2Q9UP52 801 aa13.77□□□□□ -0.21
CLIP3-201ENST00000360535 GOLGA6L9A6NEM1 432 aa13.76□□□□□ -0.21
CLIP3-201ENST00000360535 USP17L12C9JPN9 530 aa13.76□□□□□ -0.21
CLIP3-201ENST00000360535 USP17L21D6R901 530 aa13.76□□□□□ -0.21
CLIP3-201ENST00000360535 EXOC5O00471 708 aa13.76□□□□□ -0.21
CLIP3-201ENST00000360535 PHACTR2O75167 634 aa13.76□□□□□ -0.21
CLIP3-201ENST00000360535 TPM1P09493 284 aa13.76□□□□□ -0.21
CLIP3-201ENST00000360535 TTC38Q5R3I4 469 aa13.76□□□□□ -0.21
CLIP3-201ENST00000360535 FCHSD1Q86WN1 690 aa13.76□□□□□ -0.21
CLIP3-201ENST00000360535 IQCA1Q86XH1 822 aa13.76□□□□□ -0.21
CLIP3-201ENST00000360535 SLC35F6Q8N357 371 aa13.76□□□□□ -0.21
CLIP3-201ENST00000360535 RASGRP4Q8TDF6 673 aa13.76□□□□□ -0.21
CLIP3-201ENST00000360535 KIFC2Q96AC6 838 aa13.76□□□□□ -0.21
CLIP3-201ENST00000360535 ZSCAN10Q96SZ4 725 aaPredicted RBP13.76□□□□□ -0.21
CLIP3-201ENST00000360535 BRMS1Q9HCU9 246 aa13.76□□□□□ -0.21
CLIP3-201ENST00000360535 FAM53CQ9NYF3 392 aa13.76□□□□□ -0.21
CLIP3-201ENST00000360535 ADGRG1Q9Y653 693 aa13.76□□□□□ -0.21
CLIP3-201ENST00000360535 ADAMTS3O15072 1205 aa13.76□□□□□ -0.21
CLIP3-201ENST00000360535 GNAT2P19087 354 aa13.76□□□□□ -0.21
CLIP3-201ENST00000360535 SKIDA1Q1XH10 827 aa13.76□□□□□ -0.21
CLIP3-201ENST00000360535 GPR161Q8N6U8 529 aaKnown RBP13.76□□□□□ -0.21
CLIP3-201ENST00000360535 HINFPQ9BQA5 517 aa13.76□□□□□ -0.21
CLIP3-201ENST00000360535 ADAMTSL3P82987 1691 aa13.76□□□□□ -0.21
CLIP3-201ENST00000360535 HNRNPH2P55795 449 aaKnown RBP13.75□□□□□ -0.21
CLIP3-201ENST00000360535 CUL4BQ13620 913 aa13.75□□□□□ -0.21
CLIP3-201ENST00000360535 PKN1Q16512 942 aa13.75□□□□□ -0.21
CLIP3-201ENST00000360535 CCDC152Q4G0S7 254 aa13.75□□□□□ -0.21
CLIP3-201ENST00000360535 MYH2Q9UKX2 1941 aa13.75□□□□□ -0.21
CLIP3-201ENST00000360535 A0A1B0GTH6 734 aa13.75□□□□□ -0.21
CLIP3-201ENST00000360535 AATFQ9NY61 560 aaKnown RBP eCLIP13.75□□□□□ -0.21
CLIP3-201ENST00000360535 GDAQ9Y2T3 454 aa13.75□□□□□ -0.21
CLIP3-201ENST00000360535 LMAN1P49257 510 aa13.75□□□□□ -0.21
CLIP3-201ENST00000360535 GUCA1BQ9UMX6 200 aa13.75□□□□□ -0.21
CLIP3-201ENST00000360535 RNF225M0QZC1 329 aaPredicted RBP13.74□□□□□ -0.21
CLIP3-201ENST00000360535 GPKOWQ92917 476 aaPredicted RBP eCLIP13.74□□□□□ -0.21
CLIP3-201ENST00000360535 TFCP2L1Q9NZI6 479 aa13.74□□□□□ -0.21
CLIP3-201ENST00000360535 TRIM10Q9UDY6 481 aa13.74□□□□□ -0.21
CLIP3-201ENST00000360535 TRIM49BA6NDI0 452 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms