RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 HACL1Q9UJ83 578 aa21.73■■□□□ 1.07
CLN3-206ENST00000360019 IGKV6D-41A0A0C4DH26 115 aa21.73■■□□□ 1.07
CLN3-206ENST00000360019 STX6O43752 255 aa21.73■■□□□ 1.07
CLN3-206ENST00000360019 FDPSP14324 419 aaKnown RBP21.73■■□□□ 1.07
CLN3-206ENST00000360019 TRIM34Q9BYJ4 488 aa21.73■■□□□ 1.07
CLN3-206ENST00000360019 KAT14Q9H8E8 782 aa21.73■■□□□ 1.07
CLN3-206ENST00000360019 GREB1LQ9C091 1923 aaPredicted RBP21.73■■□□□ 1.07
CLN3-206ENST00000360019 GRIN3BO60391 1043 aa21.72■■□□□ 1.07
CLN3-206ENST00000360019 RASA3Q14644 834 aa21.72■■□□□ 1.07
CLN3-206ENST00000360019 TMEM47Q9BQJ4 181 aa21.72■■□□□ 1.07
CLN3-206ENST00000360019 TNNI2P48788 182 aa21.71■■□□□ 1.07
CLN3-206ENST00000360019 SHROOM1Q2M3G4 852 aaPredicted RBP21.71■■□□□ 1.07
CLN3-206ENST00000360019 LARP1BQ659C4 914 aaKnown RBP21.71■■□□□ 1.07
CLN3-206ENST00000360019 PNMA1Q8ND90 353 aa21.71■■□□□ 1.07
CLN3-206ENST00000360019 CCDC17Q96LX7 622 aa21.71■■□□□ 1.07
CLN3-206ENST00000360019 MTMR4Q9NYA4 1195 aa21.71■■□□□ 1.07
CLN3-206ENST00000360019 HERC5Q9UII4 1024 aaKnown RBP21.71■■□□□ 1.07
CLN3-206ENST00000360019 CALM1P0DP23 149 aa21.71■■□□□ 1.07
CLN3-206ENST00000360019 CALM2P0DP24 149 aa21.71■■□□□ 1.07
CLN3-206ENST00000360019 CALM3P0DP25 149 aa21.71■■□□□ 1.07
CLN3-206ENST00000360019 TNFAIP1Q13829 316 aa21.71■■□□□ 1.07
CLN3-206ENST00000360019 CERKLQ49MI3 558 aaPredicted RBP21.71■■□□□ 1.07
CLN3-206ENST00000360019 FOXD4L5Q5VV16 416 aaPredicted RBP21.71■■□□□ 1.07
CLN3-206ENST00000360019 CLEC10AQ8IUN9 316 aa21.71■■□□□ 1.07
CLN3-206ENST00000360019 FAM184AQ8NB25 1140 aa21.71■■□□□ 1.07
CLN3-206ENST00000360019 FOXD4L4Q8WXT5 416 aaPredicted RBP21.71■■□□□ 1.07
CLN3-206ENST00000360019 MTMR6Q9Y217 621 aa21.71■■□□□ 1.07
CLN3-206ENST00000360019 WDR33Q9C0J8 1336 aaKnown RBP21.7■■□□□ 1.06
CLN3-206ENST00000360019 MPHOSPH10O00566 681 aaKnown RBP21.7■■□□□ 1.06
CLN3-206ENST00000360019 PDCP20941 246 aa21.7■■□□□ 1.06
CLN3-206ENST00000360019 HIRAP54198 1017 aaPredicted RBP21.7■■□□□ 1.06
CLN3-206ENST00000360019 RRP1BQ14684 758 aaKnown RBP21.7■■□□□ 1.06
CLN3-206ENST00000360019 CDKL5O76039 1030 aa21.69■■□□□ 1.06
CLN3-206ENST00000360019 IFNAR1P17181 557 aa21.69■■□□□ 1.06
CLN3-206ENST00000360019 PPP2R5BQ15173 497 aa21.69■■□□□ 1.06
CLN3-206ENST00000360019 CPLX2Q6PUV4 134 aaKnown RBP21.69■■□□□ 1.06
CLN3-206ENST00000360019 PHKBQ93100 1093 aa21.69■■□□□ 1.06
CLN3-206ENST00000360019 TEPSINQ96N21 525 aa21.69■■□□□ 1.06
CLN3-206ENST00000360019 XPO5Q9HAV4 1204 aaKnown RBP eCLIP21.69■■□□□ 1.06
CLN3-206ENST00000360019 CCDC196A0A1B0GTZ2 297 aa21.69■■□□□ 1.06
CLN3-206ENST00000360019 ANGEL2Q5VTE6 544 aaKnown RBP21.69■■□□□ 1.06
CLN3-206ENST00000360019 CMTR1Q8N1G2 835 aaKnown RBP21.69■■□□□ 1.06
CLN3-206ENST00000360019 ORC3Q9UBD5 711 aaPredicted RBP21.69■■□□□ 1.06
CLN3-206ENST00000360019 TBC1D12O60347 775 aa21.68■■□□□ 1.06
CLN3-206ENST00000360019 GDF11O95390 407 aa21.68■■□□□ 1.06
CLN3-206ENST00000360019 ZSCAN22P10073 491 aaPredicted RBP21.68■■□□□ 1.06
CLN3-206ENST00000360019 JAG1P78504 1218 aa21.68■■□□□ 1.06
CLN3-206ENST00000360019 TOP1P11387 765 aaKnown RBP21.67■■□□□ 1.06
CLN3-206ENST00000360019 LMOD1P29536 600 aaPredicted RBP21.67■■□□□ 1.06
CLN3-206ENST00000360019 NBPF11Q86T75 865 aa21.67■■□□□ 1.06
CLN3-206ENST00000360019 DEFB129Q9H1M3 183 aa21.67■■□□□ 1.06
CLN3-206ENST00000360019 RBM28Q9NW13 759 aaKnown RBP21.67■■□□□ 1.06
CLN3-206ENST00000360019 VPS37CA5D8V6 355 aaPredicted RBP21.66■■□□□ 1.06
CLN3-206ENST00000360019 PLEKHA8P1O95397 391 aa21.66■■□□□ 1.06
CLN3-206ENST00000360019 TTLL1O95922 423 aa21.66■■□□□ 1.06
CLN3-206ENST00000360019 MAP3K10Q02779 954 aa21.66■■□□□ 1.06
CLN3-206ENST00000360019 NFKBIBQ15653 356 aa21.66■■□□□ 1.06
CLN3-206ENST00000360019 CDC37L1Q7L3B6 337 aa21.66■■□□□ 1.06
CLN3-206ENST00000360019 MIGA2Q7L4E1 593 aa21.66■■□□□ 1.06
CLN3-206ENST00000360019 CTCFLQ8NI51 663 aaPredicted RBP21.66■■□□□ 1.06
CLN3-206ENST00000360019 ADARB2Q9NS39 739 aaKnown RBP21.66■■□□□ 1.06
CLN3-206ENST00000360019 GGA3Q9NZ52 723 aa21.66■■□□□ 1.06
CLN3-206ENST00000360019 KIF3AQ9Y496 699 aa21.66■■□□□ 1.06
CLN3-206ENST00000360019 ZC3H4Q9UPT8 1303 aaKnown RBP21.66■■□□□ 1.06
CLN3-206ENST00000360019 UBE2Q2LH0YL09 131 aa21.66■■□□□ 1.06
CLN3-206ENST00000360019 FMNL1O95466 1100 aaPredicted RBP21.66■■□□□ 1.06
CLN3-206ENST00000360019 GUCY1A2P33402 732 aa21.66■■□□□ 1.06
CLN3-206ENST00000360019 FUT2Q10981 343 aa21.66■■□□□ 1.06
CLN3-206ENST00000360019 ABCB5Q2M3G0 1257 aa21.66■■□□□ 1.06
CLN3-206ENST00000360019 DPY19L2Q6NUT2 758 aa21.66■■□□□ 1.06
CLN3-206ENST00000360019 TMEM179Q6ZVK1 233 aa21.66■■□□□ 1.06
CLN3-206ENST00000360019 TMTC3Q6ZXV5 915 aa21.66■■□□□ 1.06
CLN3-206ENST00000360019 RASGRP2Q7LDG7 609 aa21.66■■□□□ 1.06
CLN3-206ENST00000360019 CCDC82Q8N4S0 544 aa21.66■■□□□ 1.06
CLN3-206ENST00000360019 MAP3K14Q99558 947 aa21.66■■□□□ 1.06
CLN3-206ENST00000360019 SLC26A6Q9BXS9 759 aa21.66■■□□□ 1.06
CLN3-206ENST00000360019 STK36Q9NRP7 1315 aa21.65■■□□□ 1.06
CLN3-206ENST00000360019 PDIA4P13667 645 aaKnown RBP21.65■■□□□ 1.06
CLN3-206ENST00000360019 GRM4Q14833 912 aa21.65■■□□□ 1.06
CLN3-206ENST00000360019 SEPT2Q15019 361 aa21.65■■□□□ 1.06
CLN3-206ENST00000360019 CLEC17AQ6ZS10 378 aa21.65■■□□□ 1.06
CLN3-206ENST00000360019 APOBEC3FQ8IUX4 373 aaKnown RBP21.65■■□□□ 1.06
CLN3-206ENST00000360019 LRRC47Q8N1G4 583 aaKnown RBP21.65■■□□□ 1.06
CLN3-206ENST00000360019 L3MBTL3Q96JM7 780 aaPredicted RBP21.65■■□□□ 1.06
CLN3-206ENST00000360019 CLIP2Q9UDT6 1046 aa21.65■■□□□ 1.06
CLN3-206ENST00000360019 F13A1P00488 732 aa21.64■■□□□ 1.06
CLN3-206ENST00000360019 FOSBP53539 338 aa21.64■■□□□ 1.06
CLN3-206ENST00000360019 AIFM3Q96NN9 605 aa21.64■■□□□ 1.06
CLN3-206ENST00000360019 GH2P01242 217 aa21.64■■□□□ 1.05
CLN3-206ENST00000360019 SSRP1Q08945 709 aaKnown RBP21.64■■□□□ 1.05
CLN3-206ENST00000360019 KANSL2Q9H9L4 492 aa21.64■■□□□ 1.05
CLN3-206ENST00000360019 MAD2L2Q9UI95 211 aa21.64■■□□□ 1.05
CLN3-206ENST00000360019 MTMR7Q9Y216 660 aa21.64■■□□□ 1.05
CLN3-206ENST00000360019 KIF5BP33176 963 aa21.63■■□□□ 1.05
CLN3-206ENST00000360019 SIAH1Q8IUQ4 282 aa21.63■■□□□ 1.05
CLN3-206ENST00000360019 STAG2Q8N3U4 1231 aa21.63■■□□□ 1.05
CLN3-206ENST00000360019 SRBD1Q8N5C6 995 aaKnown RBP21.63■■□□□ 1.05
CLN3-206ENST00000360019 CHAMP1Q96JM3 812 aa21.63■■□□□ 1.05
CLN3-206ENST00000360019 H3BQV1 296 aa21.62■■□□□ 1.05
CLN3-206ENST00000360019 BAG4O95429 457 aaKnown RBP21.62■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms