RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 FRMPD3Q5JV73 1810 aa13.77□□□□□ -0.2
RTN3-204ENST00000354497 KBTBD13C9JR72 458 aa13.77□□□□□ -0.21
RTN3-204ENST00000354497 MSCO60682 206 aa13.77□□□□□ -0.21
RTN3-204ENST00000354497 CYP2C19P33261 490 aa13.77□□□□□ -0.21
RTN3-204ENST00000354497 ANO1Q5XXA6 986 aa13.77□□□□□ -0.21
RTN3-204ENST00000354497 USP17L2Q6R6M4 530 aa13.77□□□□□ -0.21
RTN3-204ENST00000354497 LRP2BPQ9P2M1 347 aa13.77□□□□□ -0.21
RTN3-204ENST00000354497 ZBTB21Q9ULJ3 1066 aa13.77□□□□□ -0.21
RTN3-204ENST00000354497 AKAP2Q9Y2D5 859 aa13.77□□□□□ -0.21
RTN3-204ENST00000354497 IVNS1ABPQ9Y6Y0 642 aa13.77□□□□□ -0.21
RTN3-204ENST00000354497 SLC15A5A6NIM6 579 aa13.76□□□□□ -0.21
RTN3-204ENST00000354497 SMAD3P84022 425 aaKnown RBP13.76□□□□□ -0.21
RTN3-204ENST00000354497 TRIM60Q495X7 471 aa13.76□□□□□ -0.21
RTN3-204ENST00000354497 FAM9BQ8IZU0 186 aa13.76□□□□□ -0.21
RTN3-204ENST00000354497 TGFBRAP1Q8WUH2 860 aa13.76□□□□□ -0.21
RTN3-204ENST00000354497 DHX36Q9H2U1 1008 aaKnown RBP13.76□□□□□ -0.21
RTN3-204ENST00000354497 EMILIN3Q9NT22 766 aa13.76□□□□□ -0.21
RTN3-204ENST00000354497 AATFQ9NY61 560 aaKnown RBP eCLIP13.76□□□□□ -0.21
RTN3-204ENST00000354497 SAP30BPQ9UHR5 308 aaKnown RBP13.76□□□□□ -0.21
RTN3-204ENST00000354497 LTBP2Q14767 1821 aa13.76□□□□□ -0.21
RTN3-204ENST00000354497 TNFRSF10AO00220 468 aa13.75□□□□□ -0.21
RTN3-204ENST00000354497 CNMDO75829 334 aa13.75□□□□□ -0.21
RTN3-204ENST00000354497 BAG3O95817 575 aa13.75□□□□□ -0.21
RTN3-204ENST00000354497 PTPREP23469 700 aa13.75□□□□□ -0.21
RTN3-204ENST00000354497 SLC39A5Q6ZMH5 540 aa13.75□□□□□ -0.21
RTN3-204ENST00000354497 ARRDC4Q8NCT1 418 aa13.75□□□□□ -0.21
RTN3-204ENST00000354497 TRPV1Q8NER1 839 aa13.75□□□□□ -0.21
RTN3-204ENST00000354497 NPLOC4Q8TAT6 608 aa13.75□□□□□ -0.21
RTN3-204ENST00000354497 FERMT2Q96AC1 680 aa13.75□□□□□ -0.21
RTN3-204ENST00000354497 RNPC3Q96LT9 517 aaKnown RBP13.75□□□□□ -0.21
RTN3-204ENST00000354497 DNAJC18Q9H819 358 aa13.75□□□□□ -0.21
RTN3-204ENST00000354497 COPRSQ9NQ92 184 aa13.75□□□□□ -0.21
RTN3-204ENST00000354497 RAPGEFL1Q9UHV5 662 aa13.75□□□□□ -0.21
RTN3-204ENST00000354497 RABGAP1Q9Y3P9 1069 aa13.75□□□□□ -0.21
RTN3-204ENST00000354497 FARP1Q9Y4F1 1045 aaPredicted RBP13.75□□□□□ -0.21
RTN3-204ENST00000354497 VCANP13611 3396 aa13.75□□□□□ -0.21
RTN3-204ENST00000354497 USP17L15C9J2P7 530 aa13.74□□□□□ -0.21
RTN3-204ENST00000354497 USP17L13C9JLJ4 530 aa13.74□□□□□ -0.21
RTN3-204ENST00000354497 USP17L11C9JVI0 530 aa13.74□□□□□ -0.21
RTN3-204ENST00000354497 USP17L18D6R9N7 530 aa13.74□□□□□ -0.21
RTN3-204ENST00000354497 USP17L22D6RA61 530 aa13.74□□□□□ -0.21
RTN3-204ENST00000354497 USP17L17D6RBQ6 530 aa13.74□□□□□ -0.21
RTN3-204ENST00000354497 USP17L19D6RCP7 530 aa13.74□□□□□ -0.21
RTN3-204ENST00000354497 USP17L20D6RJB6 530 aa13.74□□□□□ -0.21
RTN3-204ENST00000354497 USP17L24Q0WX57 530 aa13.74□□□□□ -0.21
RTN3-204ENST00000354497 TJAP1Q5JTD0 557 aa13.74□□□□□ -0.21
RTN3-204ENST00000354497 POTEEQ6S8J3 1075 aa13.74□□□□□ -0.21
RTN3-204ENST00000354497 PDLIM7Q9NR12 457 aa13.74□□□□□ -0.21
RTN3-204ENST00000354497 SMC4Q9NTJ3 1288 aa13.74□□□□□ -0.21
RTN3-204ENST00000354497 PALD1Q9ULE6 856 aa13.74□□□□□ -0.21
RTN3-204ENST00000354497 GH2P01242 217 aa13.73□□□□□ -0.21
RTN3-204ENST00000354497 HLA-DOAP06340 250 aa13.73□□□□□ -0.21
RTN3-204ENST00000354497 NAA16Q6N069 864 aaPredicted RBP13.73□□□□□ -0.21
RTN3-204ENST00000354497 SH3RF1Q7Z6J0 888 aa13.73□□□□□ -0.21
RTN3-204ENST00000354497 DPP9Q86TI2 863 aa13.73□□□□□ -0.21
RTN3-204ENST00000354497 FOXP4Q8IVH2 680 aaPredicted RBP13.73□□□□□ -0.21
RTN3-204ENST00000354497 PLCD3Q8N3E9 789 aa13.73□□□□□ -0.21
RTN3-204ENST00000354497 PPM1EQ8WY54 764 aa13.73□□□□□ -0.21
RTN3-204ENST00000354497 HDAC5Q9UQL6 1122 aa13.73□□□□□ -0.21
RTN3-204ENST00000354497 FLT1P17948 1338 aa13.73□□□□□ -0.21
RTN3-204ENST00000354497 SIPA1L1O43166 1804 aa13.73□□□□□ -0.21
RTN3-204ENST00000354497 EYSQ5T1H1 3165 aa13.73□□□□□ -0.21
RTN3-204ENST00000354497 TMEM265A0A087WTH1 108 aa13.73□□□□□ -0.21
RTN3-204ENST00000354497 PLCG2P16885 1265 aa13.73□□□□□ -0.21
RTN3-204ENST00000354497 ADCYAP1R1P41586 468 aa13.73□□□□□ -0.21
RTN3-204ENST00000354497 VASPP50552 380 aaPredicted RBP13.73□□□□□ -0.21
RTN3-204ENST00000354497 GRB14Q14449 540 aa13.73□□□□□ -0.21
RTN3-204ENST00000354497 RAB3GAP1Q15042 981 aa13.73□□□□□ -0.21
RTN3-204ENST00000354497 USP38Q8NB14 1042 aa13.73□□□□□ -0.21
RTN3-204ENST00000354497 SNRKQ9NRH2 765 aa13.73□□□□□ -0.21
RTN3-204ENST00000354497 GINM1Q9NU53 330 aa13.73□□□□□ -0.21
RTN3-204ENST00000354497 BTBD7Q9P203 1132 aa13.73□□□□□ -0.21
RTN3-204ENST00000354497 TRIM43BA6NCK2 446 aa13.72□□□□□ -0.21
RTN3-204ENST00000354497 SRGAP3O43295 1099 aa13.72□□□□□ -0.21
RTN3-204ENST00000354497 CYBAP13498 195 aa13.72□□□□□ -0.21
RTN3-204ENST00000354497 ATF7IPQ6VMQ6 1270 aa13.72□□□□□ -0.21
RTN3-204ENST00000354497 TRIM43Q96BQ3 446 aaPredicted RBP13.72□□□□□ -0.21
RTN3-204ENST00000354497 YTHDC1Q96MU7 727 aaKnown RBP13.72□□□□□ -0.21
RTN3-204ENST00000354497 HOXC6P09630 235 aa13.71□□□□□ -0.22
RTN3-204ENST00000354497 MCAMP43121 646 aa13.71□□□□□ -0.22
RTN3-204ENST00000354497 GRIN2CQ14957 1233 aa13.71□□□□□ -0.22
RTN3-204ENST00000354497 CATSPERGQ6ZRH7 1159 aa13.71□□□□□ -0.22
RTN3-204ENST00000354497 MEIS3Q99687 375 aa13.71□□□□□ -0.22
RTN3-204ENST00000354497 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.71□□□□□ -0.22
RTN3-204ENST00000354497 ANP32CO43423 234 aa13.7□□□□□ -0.22
RTN3-204ENST00000354497 UQCRFS1P1P0C7P4 283 aa13.7□□□□□ -0.22
RTN3-204ENST00000354497 VCAM1P19320 739 aa13.7□□□□□ -0.22
RTN3-204ENST00000354497 ARID4AP29374 1257 aaPredicted RBP13.7□□□□□ -0.22
RTN3-204ENST00000354497 USP14P54578 494 aa13.7□□□□□ -0.22
RTN3-204ENST00000354497 TLE2Q04725 743 aa13.7□□□□□ -0.22
RTN3-204ENST00000354497 TTC39AQ5SRH9 613 aa13.7□□□□□ -0.22
RTN3-204ENST00000354497 PRAMEF19Q5SWL8 479 aa13.7□□□□□ -0.22
RTN3-204ENST00000354497 C12orf42Q96LP6 360 aa13.7□□□□□ -0.22
RTN3-204ENST00000354497 RPAP3Q9H6T3 665 aaPredicted RBP13.7□□□□□ -0.22
RTN3-204ENST00000354497 SEPT4O43236 478 aa13.69□□□□□ -0.22
RTN3-204ENST00000354497 RAG1P15918 1043 aa13.69□□□□□ -0.22
RTN3-204ENST00000354497 LAMA2P24043 3122 aaKnown RBP13.69□□□□□ -0.22
RTN3-204ENST00000354497 ADORA2AP29274 412 aa13.69□□□□□ -0.22
RTN3-204ENST00000354497 EPHB4P54760 987 aa13.69□□□□□ -0.22
RTN3-204ENST00000354497 DYNLL1P63167 89 aaKnown RBP13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms