RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 FANCLQ9NW38 375 aa25.33■■□□□ 1.65
UPF3A-201ENST00000351487 DACH1Q9UI36 760 aa25.33■■□□□ 1.65
UPF3A-201ENST00000351487 BMP15O95972 392 aa25.33■■□□□ 1.65
UPF3A-201ENST00000351487 PRR29P0C7W0 189 aa25.33■■□□□ 1.65
UPF3A-201ENST00000351487 VSTM4Q8IW00 320 aa25.33■■□□□ 1.65
UPF3A-201ENST00000351487 SMARCE1Q969G3 411 aa25.33■■□□□ 1.65
UPF3A-201ENST00000351487 CNTNAP5Q8WYK1 1306 aa25.33■■□□□ 1.64
UPF3A-201ENST00000351487 ZNF592Q92610 1267 aa25.32■■□□□ 1.64
UPF3A-201ENST00000351487 V9GY48 417 aaPredicted RBP25.32■■□□□ 1.64
UPF3A-201ENST00000351487 CFAP100Q494V2 611 aa25.32■■□□□ 1.64
UPF3A-201ENST00000351487 SBK1Q52WX2 424 aa25.32■■□□□ 1.64
UPF3A-201ENST00000351487 NBPF5PQ86XG9 351 aaPredicted RBP25.32■■□□□ 1.64
UPF3A-201ENST00000351487 TNFRSF25Q93038 417 aa25.32■■□□□ 1.64
UPF3A-201ENST00000351487 ARPP21Q9UBL0 812 aaPredicted RBP25.32■■□□□ 1.64
UPF3A-201ENST00000351487 NHSQ6T4R5 1651 aa25.31■■□□□ 1.64
UPF3A-201ENST00000351487 FAM205CA6NFA0 338 aa25.31■■□□□ 1.64
UPF3A-201ENST00000351487 NPY5RQ15761 445 aa25.31■■□□□ 1.64
UPF3A-201ENST00000351487 PDCL2Q8N4E4 241 aa25.31■■□□□ 1.64
UPF3A-201ENST00000351487 PPP1R13BQ96KQ4 1090 aa25.31■■□□□ 1.64
UPF3A-201ENST00000351487 SBF2Q86WG5 1849 aa25.31■■□□□ 1.64
UPF3A-201ENST00000351487 EARS2Q5JPH6 523 aaKnown RBP25.31■■□□□ 1.64
UPF3A-201ENST00000351487 KIF18AQ8NI77 898 aa25.31■■□□□ 1.64
UPF3A-201ENST00000351487 ENOX1Q8TC92 643 aaKnown RBP25.31■■□□□ 1.64
UPF3A-201ENST00000351487 BRMS1Q9HCU9 246 aa25.31■■□□□ 1.64
UPF3A-201ENST00000351487 SRP68Q9UHB9 627 aaKnown RBP25.31■■□□□ 1.64
UPF3A-201ENST00000351487 IRS2Q9Y4H2 1338 aa25.3■■□□□ 1.64
UPF3A-201ENST00000351487 ZNF18P17022 549 aa25.3■■□□□ 1.64
UPF3A-201ENST00000351487 ATP2B1P20020 1258 aa25.3■■□□□ 1.64
UPF3A-201ENST00000351487 PRDX5P30044 214 aa25.3■■□□□ 1.64
UPF3A-201ENST00000351487 VPS72Q15906 364 aa25.3■■□□□ 1.64
UPF3A-201ENST00000351487 USP49Q70CQ1 688 aa25.3■■□□□ 1.64
UPF3A-201ENST00000351487 FERMT2Q96AC1 680 aa25.3■■□□□ 1.64
UPF3A-201ENST00000351487 TMX1Q9H3N1 280 aa25.3■■□□□ 1.64
UPF3A-201ENST00000351487 SMIM5Q71RC9 77 aa25.29■■□□□ 1.64
UPF3A-201ENST00000351487 TNRC6CQ9HCJ0 1690 aaKnown RBP25.29■■□□□ 1.64
UPF3A-201ENST00000351487 TUBB4AP04350 444 aa25.29■■□□□ 1.64
UPF3A-201ENST00000351487 CTCFLQ8NI51 663 aaPredicted RBP25.29■■□□□ 1.64
UPF3A-201ENST00000351487 CCDC34Q96HJ3 373 aa25.29■■□□□ 1.64
UPF3A-201ENST00000351487 INTS13Q9NVM9 706 aa25.29■■□□□ 1.64
UPF3A-201ENST00000351487 TFCP2L1Q9NZI6 479 aa25.29■■□□□ 1.64
UPF3A-201ENST00000351487 TAF1LQ8IZX4 1826 aa25.29■■□□□ 1.64
UPF3A-201ENST00000351487 IGSF3O75054 1194 aa25.28■■□□□ 1.64
UPF3A-201ENST00000351487 TPTE2Q6XPS3 522 aa25.28■■□□□ 1.64
UPF3A-201ENST00000351487 PDILTQ8N807 584 aa25.28■■□□□ 1.64
UPF3A-201ENST00000351487 hCG_1642624A0A1W2PR95 340 aa25.28■■□□□ 1.64
UPF3A-201ENST00000351487 ZPR1O75312 459 aa25.28■■□□□ 1.64
UPF3A-201ENST00000351487 NT5C2P49902 561 aa25.28■■□□□ 1.64
UPF3A-201ENST00000351487 EVX2Q03828 476 aa25.28■■□□□ 1.64
UPF3A-201ENST00000351487 FMR1Q06787 632 aaKnown RBP eCLIP25.28■■□□□ 1.64
UPF3A-201ENST00000351487 CCP110O43303 1012 aa25.27■■□□□ 1.64
UPF3A-201ENST00000351487 TOP1P11387 765 aaKnown RBP25.27■■□□□ 1.64
UPF3A-201ENST00000351487 CT47A1Q5JQC4 288 aaPredicted RBP25.27■■□□□ 1.64
UPF3A-201ENST00000351487 PTF1AQ7RTS3 328 aa25.27■■□□□ 1.64
UPF3A-201ENST00000351487 GRAMD1CQ8IYS0 662 aa25.27■■□□□ 1.64
UPF3A-201ENST00000351487 SRBD1Q8N5C6 995 aaKnown RBP25.27■■□□□ 1.64
UPF3A-201ENST00000351487 NFE2L3Q9Y4A8 694 aa25.27■■□□□ 1.64
UPF3A-201ENST00000351487 TMEM232C9JQI7 657 aa25.27■■□□□ 1.64
UPF3A-201ENST00000351487 ERCC5P28715 1186 aaPredicted RBP25.27■■□□□ 1.64
UPF3A-201ENST00000351487 TM4SF1P30408 202 aa25.27■■□□□ 1.64
UPF3A-201ENST00000351487 SH3RF1Q7Z6J0 888 aa25.27■■□□□ 1.64
UPF3A-201ENST00000351487 A0A087X0B3 334 aa25.26■■□□□ 1.63
UPF3A-201ENST00000351487 GNPATO15228 680 aa25.26■■□□□ 1.63
UPF3A-201ENST00000351487 SLFN14P0C7P3 912 aa25.26■■□□□ 1.63
UPF3A-201ENST00000351487 NMT2O60551 498 aa25.25■■□□□ 1.63
UPF3A-201ENST00000351487 PLCD1P51178 756 aa25.25■■□□□ 1.63
UPF3A-201ENST00000351487 LY75O60449 1722 aa25.25■■□□□ 1.63
UPF3A-201ENST00000351487 WNT7AO00755 349 aa25.25■■□□□ 1.63
UPF3A-201ENST00000351487 ZNF827Q17R98 1081 aa25.25■■□□□ 1.63
UPF3A-201ENST00000351487 PPP4R3BQ5MIZ7 849 aa25.25■■□□□ 1.63
UPF3A-201ENST00000351487 TTC38Q5R3I4 469 aa25.25■■□□□ 1.63
UPF3A-201ENST00000351487 SPTY2D1Q68D10 685 aaPredicted RBP25.25■■□□□ 1.63
UPF3A-201ENST00000351487 EPSTI1Q96J88 318 aa25.25■■□□□ 1.63
UPF3A-201ENST00000351487 CYP2D6P10635 497 aa25.24■■□□□ 1.63
UPF3A-201ENST00000351487 SCG2P13521 617 aa25.24■■□□□ 1.63
UPF3A-201ENST00000351487 TRAPPC10P48553 1259 aa25.24■■□□□ 1.63
UPF3A-201ENST00000351487 ATP2C1P98194 919 aaPredicted RBP25.24■■□□□ 1.63
UPF3A-201ENST00000351487 TBX2Q13207 712 aaPredicted RBP25.24■■□□□ 1.63
UPF3A-201ENST00000351487 TXNRD3Q86VQ6 643 aa25.24■■□□□ 1.63
UPF3A-201ENST00000351487 FCHSD1Q86WN1 690 aa25.24■■□□□ 1.63
UPF3A-201ENST00000351487 SYMPKQ92797 1274 aaKnown RBP25.24■■□□□ 1.63
UPF3A-201ENST00000351487 DHX58Q96C10 678 aa25.24■■□□□ 1.63
UPF3A-201ENST00000351487 THSD7AQ9UPZ6 1657 aa25.24■■□□□ 1.63
UPF3A-201ENST00000351487 FAM47AQ5JRC9 791 aa25.24■■□□□ 1.63
UPF3A-201ENST00000351487 MED15Q96RN5 788 aa25.24■■□□□ 1.63
UPF3A-201ENST00000351487 RTCBQ9Y3I0 505 aaKnown RBP25.24■■□□□ 1.63
UPF3A-201ENST00000351487 PFKFB3Q16875 520 aaPredicted RBP25.23■■□□□ 1.63
UPF3A-201ENST00000351487 RCSD1Q6JBY9 416 aa25.23■■□□□ 1.63
UPF3A-201ENST00000351487 ARID3AQ99856 593 aa25.23■■□□□ 1.63
UPF3A-201ENST00000351487 L2HGDHQ9H9P8 463 aa25.23■■□□□ 1.63
UPF3A-201ENST00000351487 MKRN1Q9UHC7 482 aaKnown RBP25.23■■□□□ 1.63
UPF3A-201ENST00000351487 BAZ2BQ9UIF8 2168 aaKnown RBP25.23■■□□□ 1.63
UPF3A-201ENST00000351487 DZIP1Q86YF9 867 aaKnown RBP25.22■■□□□ 1.63
UPF3A-201ENST00000351487 ZNF215Q9UL58 517 aaPredicted RBP25.22■■□□□ 1.63
UPF3A-201ENST00000351487 TSPY2A6NKD2 308 aa25.22■■□□□ 1.63
UPF3A-201ENST00000351487 NOM1Q5C9Z4 860 aaKnown RBP25.22■■□□□ 1.63
UPF3A-201ENST00000351487 TMEM139Q8IV31 216 aa25.22■■□□□ 1.63
UPF3A-201ENST00000351487 PAGE5Q96GU1 130 aa25.22■■□□□ 1.63
UPF3A-201ENST00000351487 ERO1AQ96HE7 468 aa25.22■■□□□ 1.63
UPF3A-201ENST00000351487 ROBO3Q96MS0 1386 aa25.22■■□□□ 1.63
UPF3A-201ENST00000351487 NAV1Q8NEY1 1877 aa25.22■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms