RNA–Protein interactions for RNA: ENST00000347519.10

CHMP4A-201, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best) BASIC

Gene CHMP4A, Length 1,393 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-201ENST00000347519 MYH4Q9Y623 1939 aa22.34■■□□□ 1.17
CHMP4A-201ENST00000347519 NOVP48745 357 aa22.33■■□□□ 1.17
CHMP4A-201ENST00000347519 FGD1P98174 961 aa22.33■■□□□ 1.17
CHMP4A-201ENST00000347519 CCDC84Q86UT8 332 aaPredicted RBP22.33■■□□□ 1.17
CHMP4A-201ENST00000347519 SIAH1Q8IUQ4 282 aa22.33■■□□□ 1.17
CHMP4A-201ENST00000347519 ITGBL1O95965 494 aaPredicted RBP22.32■■□□□ 1.16
CHMP4A-201ENST00000347519 LIFRP42702 1097 aa22.32■■□□□ 1.16
CHMP4A-201ENST00000347519 TMEM179Q6ZVK1 233 aa22.32■■□□□ 1.16
CHMP4A-201ENST00000347519 RAB11FIP4Q86YS3 637 aa22.32■■□□□ 1.16
CHMP4A-201ENST00000347519 ANKS1AQ92625 1134 aa22.32■■□□□ 1.16
CHMP4A-201ENST00000347519 ZKSCAN4Q969J2 545 aaPredicted RBP22.32■■□□□ 1.16
CHMP4A-201ENST00000347519 WRNIP1Q96S55 665 aa22.32■■□□□ 1.16
CHMP4A-201ENST00000347519 MTMR4Q9NYA4 1195 aa22.32■■□□□ 1.16
CHMP4A-201ENST00000347519 ANP32AP39687 249 aaKnown RBP22.31■■□□□ 1.16
CHMP4A-201ENST00000347519 SART3Q15020 963 aaKnown RBP22.31■■□□□ 1.16
CHMP4A-201ENST00000347519 SGMS1Q86VZ5 419 aa22.31■■□□□ 1.16
CHMP4A-201ENST00000347519 DDX55Q8NHQ9 600 aaKnown RBP eCLIP22.31■■□□□ 1.16
CHMP4A-201ENST00000347519 TMEM47Q9BQJ4 181 aa22.31■■□□□ 1.16
CHMP4A-201ENST00000347519 PHIPQ8WWQ0 1821 aa22.3■■□□□ 1.16
CHMP4A-201ENST00000347519 KLF18A0A0U1RQI7 1052 aa22.3■■□□□ 1.16
CHMP4A-201ENST00000347519 ERICH2A1L162 156 aa22.3■■□□□ 1.16
CHMP4A-201ENST00000347519 CTNND1O60716 968 aaKnown RBP22.3■■□□□ 1.16
CHMP4A-201ENST00000347519 EVCP57679 992 aa22.3■■□□□ 1.16
CHMP4A-201ENST00000347519 RAB3GAP1Q15042 981 aa22.3■■□□□ 1.16
CHMP4A-201ENST00000347519 ANKRD1Q15327 319 aa22.3■■□□□ 1.16
CHMP4A-201ENST00000347519 ME3Q16798 604 aa22.3■■□□□ 1.16
CHMP4A-201ENST00000347519 IFIT1BQ5T764 474 aaKnown RBP22.3■■□□□ 1.16
CHMP4A-201ENST00000347519 DGKHQ86XP1 1220 aa22.3■■□□□ 1.16
CHMP4A-201ENST00000347519 ZNF408Q9H9D4 720 aa22.3■■□□□ 1.16
CHMP4A-201ENST00000347519 CABP5Q9NP86 173 aa22.3■■□□□ 1.16
CHMP4A-201ENST00000347519 LIMCH1Q9UPQ0 1083 aa22.3■■□□□ 1.16
CHMP4A-201ENST00000347519 TRPM7Q96QT4 1865 aa22.3■■□□□ 1.16
CHMP4A-201ENST00000347519 ST3GAL1Q11201 340 aa22.29■■□□□ 1.16
CHMP4A-201ENST00000347519 NFXL1Q6ZNB6 911 aa22.29■■□□□ 1.16
CHMP4A-201ENST00000347519 PPP1R3FQ6ZSY5 799 aaPredicted RBP22.29■■□□□ 1.16
CHMP4A-201ENST00000347519 IL27Q8NEV9 243 aa22.29■■□□□ 1.16
CHMP4A-201ENST00000347519 RBM46Q8TBY0 533 aaKnown RBP22.29■■□□□ 1.16
CHMP4A-201ENST00000347519 TMX3Q96JJ7 454 aa22.29■■□□□ 1.16
CHMP4A-201ENST00000347519 MYL10Q9BUA6 226 aa22.29■■□□□ 1.16
CHMP4A-201ENST00000347519 CLIP2Q9UDT6 1046 aa22.29■■□□□ 1.16
CHMP4A-201ENST00000347519 STX8Q9UNK0 236 aa22.29■■□□□ 1.16
CHMP4A-201ENST00000347519 PPP1R12BO60237 982 aaPredicted RBP22.28■■□□□ 1.16
CHMP4A-201ENST00000347519 EEF2P13639 858 aaKnown RBP22.28■■□□□ 1.16
CHMP4A-201ENST00000347519 PDIA3P30101 505 aaKnown RBP22.28■■□□□ 1.16
CHMP4A-201ENST00000347519 NF2P35240 595 aa22.28■■□□□ 1.16
CHMP4A-201ENST00000347519 MCM2P49736 904 aa22.28■■□□□ 1.16
CHMP4A-201ENST00000347519 CCDC178Q5BJE1 867 aa22.28■■□□□ 1.16
CHMP4A-201ENST00000347519 HSCBQ8IWL3 235 aa22.28■■□□□ 1.16
CHMP4A-201ENST00000347519 SCYL3Q8IZE3 742 aa22.28■■□□□ 1.16
CHMP4A-201ENST00000347519 NECAB1Q8N987 351 aa22.28■■□□□ 1.16
CHMP4A-201ENST00000347519 KANSL2Q9H9L4 492 aa22.28■■□□□ 1.16
CHMP4A-201ENST00000347519 HPS5Q9UPZ3 1129 aa22.28■■□□□ 1.16
CHMP4A-201ENST00000347519 A0A1W2PRG0 241 aa22.27■■□□□ 1.16
CHMP4A-201ENST00000347519 CCDC69A6NI79 296 aa22.27■■□□□ 1.16
CHMP4A-201ENST00000347519 K7ELQ4 463 aaPredicted RBP22.27■■□□□ 1.16
CHMP4A-201ENST00000347519 RXRAP19793 462 aa22.27■■□□□ 1.16
CHMP4A-201ENST00000347519 SLC4A3P48751 1232 aa22.27■■□□□ 1.16
CHMP4A-201ENST00000347519 MAP3K9P80192 1104 aa22.27■■□□□ 1.16
CHMP4A-201ENST00000347519 ATP2B2Q01814 1243 aa22.27■■□□□ 1.16
CHMP4A-201ENST00000347519 ICA1Q05084 483 aa22.27■■□□□ 1.16
CHMP4A-201ENST00000347519 STK3Q13188 491 aa22.27■■□□□ 1.16
CHMP4A-201ENST00000347519 APOA5Q6Q788 366 aa22.27■■□□□ 1.16
CHMP4A-201ENST00000347519 RASGRP2Q7LDG7 609 aa22.27■■□□□ 1.16
CHMP4A-201ENST00000347519 ZNF654Q8IZM8 581 aa22.27■■□□□ 1.16
CHMP4A-201ENST00000347519 LRRC47Q8N1G4 583 aaKnown RBP22.27■■□□□ 1.16
CHMP4A-201ENST00000347519 ACER1Q8TDN7 264 aa22.27■■□□□ 1.16
CHMP4A-201ENST00000347519 NYAP2Q9P242 653 aa22.27■■□□□ 1.16
CHMP4A-201ENST00000347519 NAP1L2Q9ULW6 460 aaPredicted RBP22.27■■□□□ 1.16
CHMP4A-201ENST00000347519 UBE2Q2LH0YL09 131 aa22.26■■□□□ 1.15
CHMP4A-201ENST00000347519 DTNBO60941 627 aa22.26■■□□□ 1.15
CHMP4A-201ENST00000347519 TTLL1O95922 423 aa22.26■■□□□ 1.15
CHMP4A-201ENST00000347519 ASNSP08243 561 aa22.26■■□□□ 1.15
CHMP4A-201ENST00000347519 TOP1P11387 765 aaKnown RBP22.26■■□□□ 1.15
CHMP4A-201ENST00000347519 TTLL12Q14166 644 aaPredicted RBP22.26■■□□□ 1.15
CHMP4A-201ENST00000347519 MAP3K11Q16584 847 aa22.26■■□□□ 1.15
CHMP4A-201ENST00000347519 NOL9Q5SY16 702 aaKnown RBP22.26■■□□□ 1.15
CHMP4A-201ENST00000347519 CHMP4CQ96CF2 233 aa22.26■■□□□ 1.15
CHMP4A-201ENST00000347519 SNCAIPQ9Y6H5 919 aa22.26■■□□□ 1.15
CHMP4A-201ENST00000347519 GOLGA8BA8MQT2 603 aa22.25■■□□□ 1.15
CHMP4A-201ENST00000347519 ECE1P42892 770 aa22.25■■□□□ 1.15
CHMP4A-201ENST00000347519 APLP1P51693 650 aa22.25■■□□□ 1.15
CHMP4A-201ENST00000347519 VGLL4Q14135 290 aa22.25■■□□□ 1.15
CHMP4A-201ENST00000347519 CST9Q5W186 159 aa22.25■■□□□ 1.15
CHMP4A-201ENST00000347519 TMTC2Q8N394 836 aa22.25■■□□□ 1.15
CHMP4A-201ENST00000347519 ZNF274Q96GC6 653 aaPredicted RBP22.25■■□□□ 1.15
CHMP4A-201ENST00000347519 CLMNQ96JQ2 1002 aa22.25■■□□□ 1.15
CHMP4A-201ENST00000347519 KAT14Q9H8E8 782 aa22.25■■□□□ 1.15
CHMP4A-201ENST00000347519 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.25■■□□□ 1.15
CHMP4A-201ENST00000347519 CELF2O95319 508 aaKnown RBP22.25■■□□□ 1.15
CHMP4A-201ENST00000347519 IREB2P48200 963 aaKnown RBP22.25■■□□□ 1.15
CHMP4A-201ENST00000347519 CCT2P78371 535 aaKnown RBP22.25■■□□□ 1.15
CHMP4A-201ENST00000347519 TROAPQ12815 778 aa22.25■■□□□ 1.15
CHMP4A-201ENST00000347519 FSTL1Q12841 308 aa22.25■■□□□ 1.15
CHMP4A-201ENST00000347519 MICU3Q86XE3 530 aa22.25■■□□□ 1.15
CHMP4A-201ENST00000347519 CCDC144CPQ8IYA2 1237 aa22.25■■□□□ 1.15
CHMP4A-201ENST00000347519 PNMA1Q8ND90 353 aa22.25■■□□□ 1.15
CHMP4A-201ENST00000347519 MKL1Q969V6 931 aa22.25■■□□□ 1.15
CHMP4A-201ENST00000347519 ZSCAN31Q96LW9 406 aaPredicted RBP22.25■■□□□ 1.15
CHMP4A-201ENST00000347519 NCOA5Q9HCD5 579 aaKnown RBP22.25■■□□□ 1.15
CHMP4A-201ENST00000347519 GINM1Q9NU53 330 aa22.25■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms