RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 MLLT1Q03111 559 aaPredicted RBP3.67□□□□□ -1.82
CSMD3-202ENST00000339701 IQCA1Q86XH1 822 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 UBAC1Q9BSL1 405 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 CNPY2Q9Y2B0 182 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 ERBB4Q15303 1308 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 BAG4O95429 457 aaKnown RBP3.67□□□□□ -1.82
CSMD3-202ENST00000339701 MCM4P33991 863 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 TTF1Q15361 905 aaPredicted RBP3.67□□□□□ -1.82
CSMD3-202ENST00000339701 HYPKQ9NX55 129 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 CCDC69A6NI79 296 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 ERCC3P19447 782 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 INF2Q27J81 1249 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 FOXD4L1Q9NU39 408 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 SATB2Q9UPW6 733 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 SBDSQ9Y3A5 250 aaKnown RBP eCLIP3.67□□□□□ -1.82
CSMD3-202ENST00000339701 MAD1L1Q9Y6D9 718 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 DDX60LQ5H9U9 1706 aaKnown RBP3.67□□□□□ -1.82
CSMD3-202ENST00000339701 GNAT1P11488 350 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 KIF5AQ12840 1032 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 PDXDC1Q6P996 788 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 HS6ST3Q8IZP7 471 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 DTX3LQ8TDB6 740 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 ZFP91Q96JP5 570 aaPredicted RBP3.67□□□□□ -1.82
CSMD3-202ENST00000339701 POLR3AO14802 1390 aaPredicted RBP3.67□□□□□ -1.82
CSMD3-202ENST00000339701 HMOX1P09601 288 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 FKBP4Q02790 459 aaKnown RBP eCLIP3.67□□□□□ -1.82
CSMD3-202ENST00000339701 SEPT2Q15019 361 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 PARP10Q53GL7 1025 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 CDAN1Q8IWY9 1227 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 RDH13Q8NBN7 331 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 BANK1Q8NDB2 785 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 PIP4K2CQ8TBX8 421 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 ARHGAP45Q92619 1136 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 TRIM47Q96LD4 638 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 UPF3BQ9BZI7 483 aaKnown RBP3.67□□□□□ -1.82
CSMD3-202ENST00000339701 LRP6O75581 1613 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 F8W031 263 aaPredicted RBP3.67□□□□□ -1.82
CSMD3-202ENST00000339701 C4BPBP20851 252 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 SLC8A3P57103 927 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 FBF1Q8TES7 1133 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 CNPY3Q9BT09 278 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 COPG1Q9Y678 874 aaKnown RBP3.67□□□□□ -1.82
CSMD3-202ENST00000339701 AOX1Q06278 1338 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 PCSK2P16519 638 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 NFKBIAP25963 317 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 LTKP29376 864 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 RIPK4P57078 832 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 LACTBP83111 547 aaPredicted RBP3.67□□□□□ -1.82
CSMD3-202ENST00000339701 NAA30Q147X3 362 aaPredicted RBP3.67□□□□□ -1.82
CSMD3-202ENST00000339701 FCHSD1Q86WN1 690 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 MCF2L2Q86YR7 1114 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 YAF2Q8IY57 180 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 RILPL2Q969X0 211 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 IWS1Q96ST2 819 aa3.67□□□□□ -1.82
CSMD3-202ENST00000339701 MRPL40Q9NQ50 206 aaKnown RBP3.67□□□□□ -1.82
CSMD3-202ENST00000339701 ARHGAP23Q9P227 1491 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 SNRPA1P09661 255 aaKnown RBP3.66□□□□□ -1.82
CSMD3-202ENST00000339701 DMWDQ09019 674 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 CCDC84Q86UT8 332 aaPredicted RBP3.66□□□□□ -1.82
CSMD3-202ENST00000339701 NFATC2IPQ8NCF5 419 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 TTC1Q99614 292 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 RNF14Q9UBS8 474 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 SLC8A2Q9UPR5 921 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 BICDL2A1A5D9 508 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 BIN1O00499 593 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 CASQ2O14958 399 aaPredicted RBP3.66□□□□□ -1.82
CSMD3-202ENST00000339701 PRPF6O94906 941 aaKnown RBP3.66□□□□□ -1.82
CSMD3-202ENST00000339701 PPP2R3AQ06190 1150 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 MTMR3Q13615 1198 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 CUL4BQ13620 913 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 STK38Q15208 465 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 KIAA0753Q2KHM9 967 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 CCDC183Q5T5S1 534 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 PHLDB3Q6NSJ2 640 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 ERMNQ8TAM6 284 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 INTS4Q96HW7 963 aaKnown RBP3.66□□□□□ -1.82
CSMD3-202ENST00000339701 MEGF6O75095 1541 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 PHLPP2Q6ZVD8 1323 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 THAP12O43422 761 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 PHACTR2O75167 634 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 SERPINC1P01008 464 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 MAP3K7CLP57077 242 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 BBOF1Q8ND07 529 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 GSDMBQ8TAX9 411 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 NRBF2Q96F24 287 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 CRNKL1Q9BZJ0 848 aaKnown RBP3.66□□□□□ -1.82
CSMD3-202ENST00000339701 RGPD1P0DJD0 1748 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 MAN1A1P33908 653 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 CRB1P82279 1406 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 KCTD17Q8N5Z5 321 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 PSMA8Q8TAA3 256 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 TBC1D31Q96DN5 1066 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 TANGO6Q9C0B7 1094 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 PRDM10Q9NQV6 1147 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 SCN11AQ9UI33 1791 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 WNK3Q9BYP7 1800 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 MYH1P12882 1939 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 PTPDC1A2A3K4 754 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 CALML3P27482 149 aa3.66□□□□□ -1.82
CSMD3-202ENST00000339701 MORC4Q8TE76 937 aa3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms