RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 CRACR2BQ8N4Y2 399 aaPredicted RBP17.41■□□□□ 0.38
CCDC88C-202ENST00000334448 TNPO1Q92973 898 aaKnown RBP17.41■□□□□ 0.38
CCDC88C-202ENST00000334448 KAT14Q9H8E8 782 aa17.41■□□□□ 0.38
CCDC88C-202ENST00000334448 MTMR4Q9NYA4 1195 aa17.41■□□□□ 0.38
CCDC88C-202ENST00000334448 NAP1L2Q9ULW6 460 aaPredicted RBP17.41■□□□□ 0.38
CCDC88C-202ENST00000334448 SYNPO2Q9UMS6 1093 aa17.41■□□□□ 0.38
CCDC88C-202ENST00000334448 MTMR6Q9Y217 621 aa17.41■□□□□ 0.38
CCDC88C-202ENST00000334448 TOP1P11387 765 aaKnown RBP17.4■□□□□ 0.38
CCDC88C-202ENST00000334448 ADD1P35611 737 aaKnown RBP17.4■□□□□ 0.38
CCDC88C-202ENST00000334448 FUT2Q10981 343 aa17.4■□□□□ 0.38
CCDC88C-202ENST00000334448 PNMA1Q8ND90 353 aa17.4■□□□□ 0.38
CCDC88C-202ENST00000334448 CEP95Q96GE4 821 aa17.4■□□□□ 0.38
CCDC88C-202ENST00000334448 TEPSINQ96N21 525 aa17.4■□□□□ 0.38
CCDC88C-202ENST00000334448 TMEM47Q9BQJ4 181 aa17.4■□□□□ 0.38
CCDC88C-202ENST00000334448 VEZTQ9HBM0 779 aa17.4■□□□□ 0.38
CCDC88C-202ENST00000334448 PITPNM2Q9BZ72 1349 aa17.4■□□□□ 0.38
CCDC88C-202ENST00000334448 ZSCAN22P10073 491 aaPredicted RBP17.39■□□□□ 0.37
CCDC88C-202ENST00000334448 TBC1D10BQ4KMP7 808 aaPredicted RBP17.39■□□□□ 0.37
CCDC88C-202ENST00000334448 TMEM179Q6ZVK1 233 aa17.39■□□□□ 0.37
CCDC88C-202ENST00000334448 SAMD7Q7Z3H4 446 aa17.39■□□□□ 0.37
CCDC88C-202ENST00000334448 APOBEC3FQ8IUX4 373 aaKnown RBP17.39■□□□□ 0.37
CCDC88C-202ENST00000334448 MYL10Q9BUA6 226 aa17.39■□□□□ 0.37
CCDC88C-202ENST00000334448 TRIM34Q9BYJ4 488 aa17.39■□□□□ 0.37
CCDC88C-202ENST00000334448 PPP2R3BQ9Y5P8 575 aa17.39■□□□□ 0.37
CCDC88C-202ENST00000334448 FMNL1O95466 1100 aaPredicted RBP17.38■□□□□ 0.37
CCDC88C-202ENST00000334448 TTLL1O95922 423 aa17.38■□□□□ 0.37
CCDC88C-202ENST00000334448 RXRAP19793 462 aa17.38■□□□□ 0.37
CCDC88C-202ENST00000334448 KIF5BP33176 963 aa17.38■□□□□ 0.37
CCDC88C-202ENST00000334448 RASA3Q14644 834 aa17.38■□□□□ 0.37
CCDC88C-202ENST00000334448 GRM4Q14833 912 aa17.38■□□□□ 0.37
CCDC88C-202ENST00000334448 CERKLQ49MI3 558 aaPredicted RBP17.38■□□□□ 0.37
CCDC88C-202ENST00000334448 LARP1BQ659C4 914 aaKnown RBP17.38■□□□□ 0.37
CCDC88C-202ENST00000334448 TMTC3Q6ZXV5 915 aa17.38■□□□□ 0.37
CCDC88C-202ENST00000334448 NBPF11Q86T75 865 aa17.38■□□□□ 0.37
CCDC88C-202ENST00000334448 RAB11FIP4Q86YS3 637 aa17.38■□□□□ 0.37
CCDC88C-202ENST00000334448 FAM184AQ8NB25 1140 aa17.38■□□□□ 0.37
CCDC88C-202ENST00000334448 CTCFLQ8NI51 663 aaPredicted RBP17.38■□□□□ 0.37
CCDC88C-202ENST00000334448 TRPM4Q8TD43 1214 aa17.38■□□□□ 0.37
CCDC88C-202ENST00000334448 RNF26Q9BY78 433 aaPredicted RBP17.38■□□□□ 0.37
CCDC88C-202ENST00000334448 TMEM39BQ9GZU3 492 aa17.38■□□□□ 0.37
CCDC88C-202ENST00000334448 ADARB2Q9NS39 739 aaKnown RBP17.38■□□□□ 0.37
CCDC88C-202ENST00000334448 NYAP2Q9P242 653 aa17.38■□□□□ 0.37
CCDC88C-202ENST00000334448 ORC3Q9UBD5 711 aaPredicted RBP17.38■□□□□ 0.37
CCDC88C-202ENST00000334448 SNHG28P0DPA3 235 aa17.37■□□□□ 0.37
CCDC88C-202ENST00000334448 GPR162Q16538 588 aa17.37■□□□□ 0.37
CCDC88C-202ENST00000334448 MKL1Q969V6 931 aa17.37■□□□□ 0.37
CCDC88C-202ENST00000334448 GBP4Q96PP9 640 aa17.37■□□□□ 0.37
CCDC88C-202ENST00000334448 KANSL2Q9H9L4 492 aa17.37■□□□□ 0.37
CCDC88C-202ENST00000334448 GINM1Q9NU53 330 aa17.37■□□□□ 0.37
CCDC88C-202ENST00000334448 HACL1Q9UJ83 578 aa17.37■□□□□ 0.37
CCDC88C-202ENST00000334448 STX8Q9UNK0 236 aa17.37■□□□□ 0.37
CCDC88C-202ENST00000334448 DDNO94850 711 aaPredicted RBP17.36■□□□□ 0.37
CCDC88C-202ENST00000334448 SMARCA1P28370 1054 aa17.36■□□□□ 0.37
CCDC88C-202ENST00000334448 LMOD1P29536 600 aaPredicted RBP17.36■□□□□ 0.37
CCDC88C-202ENST00000334448 EPS15P42566 896 aa17.36■□□□□ 0.37
CCDC88C-202ENST00000334448 GNAQP50148 359 aa17.36■□□□□ 0.37
CCDC88C-202ENST00000334448 NUP133Q8WUM0 1156 aa17.36■□□□□ 0.37
CCDC88C-202ENST00000334448 WASF1Q92558 559 aa17.36■□□□□ 0.37
CCDC88C-202ENST00000334448 DDX11Q96FC9 970 aa17.36■□□□□ 0.37
CCDC88C-202ENST00000334448 LZTS2Q9BRK4 669 aa17.36■□□□□ 0.37
CCDC88C-202ENST00000334448 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.36■□□□□ 0.37
CCDC88C-202ENST00000334448 RBM27Q9P2N5 1060 aaKnown RBP17.36■□□□□ 0.37
CCDC88C-202ENST00000334448 SRCAPQ6ZRS2 3230 aa17.35■□□□□ 0.37
CCDC88C-202ENST00000334448 PALM3A6NDB9 673 aaPredicted RBP17.35■□□□□ 0.37
CCDC88C-202ENST00000334448 FAM196BA6NMK8 535 aa17.35■□□□□ 0.37
CCDC88C-202ENST00000334448 F13A1P00488 732 aa17.35■□□□□ 0.37
CCDC88C-202ENST00000334448 GUCY1A2P33402 732 aa17.35■□□□□ 0.37
CCDC88C-202ENST00000334448 HIRAP54198 1017 aaPredicted RBP17.35■□□□□ 0.37
CCDC88C-202ENST00000334448 ABCB5Q2M3G0 1257 aa17.35■□□□□ 0.37
CCDC88C-202ENST00000334448 CCDC144CPQ8IYA2 1237 aa17.35■□□□□ 0.37
CCDC88C-202ENST00000334448 TRIM22Q8IYM9 498 aa17.35■□□□□ 0.37
CCDC88C-202ENST00000334448 HOOK2Q96ED9 719 aa17.35■□□□□ 0.37
CCDC88C-202ENST00000334448 DEFB129Q9H1M3 183 aa17.35■□□□□ 0.37
CCDC88C-202ENST00000334448 ATP6V1DQ9Y5K8 247 aa17.35■□□□□ 0.37
CCDC88C-202ENST00000334448 PRPF3O43395 683 aaKnown RBP17.34■□□□□ 0.37
CCDC88C-202ENST00000334448 ASTN2O75129 1339 aaPredicted RBP17.34■□□□□ 0.37
CCDC88C-202ENST00000334448 DEXIO95424 95 aa17.34■□□□□ 0.37
CCDC88C-202ENST00000334448 BAG4O95429 457 aaKnown RBP17.34■□□□□ 0.37
CCDC88C-202ENST00000334448 MYH8P13535 1937 aa17.34■□□□□ 0.37
CCDC88C-202ENST00000334448 SSRP1Q08945 709 aaKnown RBP17.34■□□□□ 0.37
CCDC88C-202ENST00000334448 NFKBIBQ15653 356 aa17.34■□□□□ 0.37
CCDC88C-202ENST00000334448 RBM26Q5T8P6 1007 aaKnown RBP17.34■□□□□ 0.37
CCDC88C-202ENST00000334448 DPY19L2Q6NUT2 758 aa17.34■□□□□ 0.37
CCDC88C-202ENST00000334448 CDC37L1Q7L3B6 337 aa17.34■□□□□ 0.37
CCDC88C-202ENST00000334448 CDAN1Q8IWY9 1227 aa17.34■□□□□ 0.37
CCDC88C-202ENST00000334448 FAM177A1Q8N128 213 aaPredicted RBP17.34■□□□□ 0.37
CCDC88C-202ENST00000334448 FBXO18Q8NFZ0 1043 aa17.34■□□□□ 0.37
CCDC88C-202ENST00000334448 CNTNAP5Q8WYK1 1306 aa17.34■□□□□ 0.37
CCDC88C-202ENST00000334448 MAD2L2Q9UI95 211 aa17.34■□□□□ 0.37
CCDC88C-202ENST00000334448 GLTPD2A6NH11 291 aa17.33■□□□□ 0.36
CCDC88C-202ENST00000334448 SLURP2P0DP57 97 aa17.33■□□□□ 0.36
CCDC88C-202ENST00000334448 RRP1BQ14684 758 aaKnown RBP17.33■□□□□ 0.36
CCDC88C-202ENST00000334448 ANGEL2Q5VTE6 544 aaKnown RBP17.33■□□□□ 0.36
CCDC88C-202ENST00000334448 PHKBQ93100 1093 aa17.33■□□□□ 0.36
CCDC88C-202ENST00000334448 SPZ1Q9BXG8 430 aa17.33■□□□□ 0.36
CCDC88C-202ENST00000334448 VPS37CA5D8V6 355 aaPredicted RBP17.32■□□□□ 0.36
CCDC88C-202ENST00000334448 PHF20L1A8MW92 1017 aa17.32■□□□□ 0.36
CCDC88C-202ENST00000334448 PLEKHA8P1O95397 391 aa17.32■□□□□ 0.36
CCDC88C-202ENST00000334448 PDHBP11177 359 aa17.32■□□□□ 0.36
CCDC88C-202ENST00000334448 MCM4P33991 863 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms