RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 APPP05067 770 aa18.93■□□□□ 0.62
CLN3-201ENST00000333496 PKN2Q16513 984 aaKnown RBP18.93■□□□□ 0.62
CLN3-201ENST00000333496 ROBO3Q96MS0 1386 aa18.93■□□□□ 0.62
CLN3-201ENST00000333496 CTGFP29279 349 aa18.92■□□□□ 0.62
CLN3-201ENST00000333496 TDO2P48775 406 aa18.92■□□□□ 0.62
CLN3-201ENST00000333496 LACTBP83111 547 aaPredicted RBP18.92■□□□□ 0.62
CLN3-201ENST00000333496 VPS53Q5VIR6 699 aa18.92■□□□□ 0.62
CLN3-201ENST00000333496 STK11IPQ8N1F8 1099 aa18.92■□□□□ 0.62
CLN3-201ENST00000333496 BRCA2P51587 3418 aa18.92■□□□□ 0.62
CLN3-201ENST00000333496 A0A1W2PRG0 241 aa18.92■□□□□ 0.62
CLN3-201ENST00000333496 NMIQ13287 307 aaPredicted RBP18.92■□□□□ 0.62
CLN3-201ENST00000333496 ZYXQ15942 572 aaKnown RBP18.92■□□□□ 0.62
CLN3-201ENST00000333496 FBXO46Q6PJ61 603 aaPredicted RBP18.92■□□□□ 0.62
CLN3-201ENST00000333496 TMEM179Q6ZVK1 233 aa18.92■□□□□ 0.62
CLN3-201ENST00000333496 SIAH1Q8IUQ4 282 aa18.92■□□□□ 0.62
CLN3-201ENST00000333496 CCDC17Q96LX7 622 aa18.92■□□□□ 0.62
CLN3-201ENST00000333496 EFCC1Q9HA90 598 aa18.92■□□□□ 0.62
CLN3-201ENST00000333496 TMOD4Q9NZQ9 345 aa18.92■□□□□ 0.62
CLN3-201ENST00000333496 SDSP20132 328 aa18.91■□□□□ 0.62
CLN3-201ENST00000333496 HOXA7P31268 230 aaPredicted RBP18.91■□□□□ 0.62
CLN3-201ENST00000333496 MCMDC2Q4G0Z9 681 aa18.91■□□□□ 0.62
CLN3-201ENST00000333496 USP17L2Q6R6M4 530 aa18.91■□□□□ 0.62
CLN3-201ENST00000333496 CLEC10AQ8IUN9 316 aa18.91■□□□□ 0.62
CLN3-201ENST00000333496 C12orf42Q96LP6 360 aa18.91■□□□□ 0.62
CLN3-201ENST00000333496 KIAA1683Q9H0B3 1180 aa18.91■□□□□ 0.62
CLN3-201ENST00000333496 ASCC2Q9H1I8 757 aaPredicted RBP18.91■□□□□ 0.62
CLN3-201ENST00000333496 PNMA3Q9UL41 463 aa18.91■□□□□ 0.62
CLN3-201ENST00000333496 MYH4Q9Y623 1939 aa18.91■□□□□ 0.62
CLN3-201ENST00000333496 GSPT1P15170 499 aaKnown RBP18.9■□□□□ 0.62
CLN3-201ENST00000333496 PABPC4Q13310 644 aaKnown RBP eCLIP18.9■□□□□ 0.623e-6■■■■□ 26.6
CLN3-201ENST00000333496 ZNF589Q86UQ0 364 aaPredicted RBP18.9■□□□□ 0.62
CLN3-201ENST00000333496 SMCR8Q8TEV9 937 aaPredicted RBP18.9■□□□□ 0.62
CLN3-201ENST00000333496 NACAP1Q9BZK3 213 aa18.9■□□□□ 0.62
CLN3-201ENST00000333496 NAPBQ9H115 298 aa18.9■□□□□ 0.62
CLN3-201ENST00000333496 HPS5Q9UPZ3 1129 aa18.9■□□□□ 0.62
CLN3-201ENST00000333496 RLFQ13129 1914 aa18.9■□□□□ 0.62
CLN3-201ENST00000333496 ECM2O94769 699 aaPredicted RBP18.89■□□□□ 0.62
CLN3-201ENST00000333496 RASA1P20936 1047 aa18.89■□□□□ 0.62
CLN3-201ENST00000333496 FEZ1Q99689 392 aa18.89■□□□□ 0.62
CLN3-201ENST00000333496 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.89■□□□□ 0.62
CLN3-201ENST00000333496 PTPN22Q9Y2R2 807 aa18.89■□□□□ 0.62
CLN3-201ENST00000333496 PARP14Q460N5 1801 aa18.89■□□□□ 0.61
CLN3-201ENST00000333496 OSBPP22059 807 aa18.89■□□□□ 0.61
CLN3-201ENST00000333496 USP14P54578 494 aa18.89■□□□□ 0.61
CLN3-201ENST00000333496 TTC22Q5TAA0 569 aa18.89■□□□□ 0.61
CLN3-201ENST00000333496 CCDC85CA6NKD9 419 aa18.88■□□□□ 0.61
CLN3-201ENST00000333496 KIF22Q14807 665 aa18.88■□□□□ 0.61
CLN3-201ENST00000333496 ANKRD13CQ8N6S4 541 aa18.88■□□□□ 0.61
CLN3-201ENST00000333496 TRIM47Q96LD4 638 aa18.88■□□□□ 0.61
CLN3-201ENST00000333496 P2RX7Q99572 595 aaKnown RBP18.88■□□□□ 0.61
CLN3-201ENST00000333496 VCAM1P19320 739 aa18.87■□□□□ 0.61
CLN3-201ENST00000333496 PSMC4P43686 418 aa18.87■□□□□ 0.61
CLN3-201ENST00000333496 ICA1Q05084 483 aa18.87■□□□□ 0.61
CLN3-201ENST00000333496 PPARAQ07869 468 aa18.87■□□□□ 0.61
CLN3-201ENST00000333496 KIAA1755Q5JYT7 1200 aa18.87■□□□□ 0.61
CLN3-201ENST00000333496 MKNK2Q9HBH9 465 aa18.87■□□□□ 0.61
CLN3-201ENST00000333496 CCDC171Q6TFL3 1326 aa18.87■□□□□ 0.61
CLN3-201ENST00000333496 PRDM1O75626 825 aa18.86■□□□□ 0.61
CLN3-201ENST00000333496 HSPD1P10809 573 aaKnown RBP18.86■□□□□ 0.61
CLN3-201ENST00000333496 IRX3P78415 501 aaPredicted RBP18.86■□□□□ 0.61
CLN3-201ENST00000333496 ARHGEF6Q15052 776 aa18.86■□□□□ 0.61
CLN3-201ENST00000333496 ALX1Q15699 326 aa18.86■□□□□ 0.61
CLN3-201ENST00000333496 FAM110CQ1W6H9 321 aa18.86■□□□□ 0.61
CLN3-201ENST00000333496 POTEEQ6S8J3 1075 aa18.86■□□□□ 0.61
CLN3-201ENST00000333496 PEX10O60683 326 aa18.85■□□□□ 0.61
CLN3-201ENST00000333496 FGAP02671 866 aa18.85■□□□□ 0.61
CLN3-201ENST00000333496 EEF2P13639 858 aaKnown RBP18.85■□□□□ 0.61
CLN3-201ENST00000333496 GCLCP48506 637 aaPredicted RBP18.85■□□□□ 0.61
CLN3-201ENST00000333496 HERVK_113P62684 666 aa18.85■□□□□ 0.61
CLN3-201ENST00000333496 CWC27Q6UX04 472 aaKnown RBP18.85■□□□□ 0.61
CLN3-201ENST00000333496 KANSL2Q9H9L4 492 aa18.85■□□□□ 0.61
CLN3-201ENST00000333496 TMX2Q9Y320 296 aa18.85■□□□□ 0.61
CLN3-201ENST00000333496 TACC3Q9Y6A5 838 aa18.85■□□□□ 0.61
CLN3-201ENST00000333496 GNRH1P01148 92 aa18.85■□□□□ 0.61
CLN3-201ENST00000333496 CTDSPL2Q05D32 466 aa18.85■□□□□ 0.61
CLN3-201ENST00000333496 CATSPERGQ6ZRH7 1159 aa18.85■□□□□ 0.61
CLN3-201ENST00000333496 ARHGEF10LQ9HCE6 1279 aa18.85■□□□□ 0.61
CLN3-201ENST00000333496 TXNRD2Q9NNW7 524 aa18.85■□□□□ 0.61
CLN3-201ENST00000333496 PTCH2Q9Y6C5 1203 aa18.85■□□□□ 0.61
CLN3-201ENST00000333496 PLXNB2O15031 1838 aa18.84■□□□□ 0.61
CLN3-201ENST00000333496 LAMA4Q16363 1823 aa18.84■□□□□ 0.61
CLN3-201ENST00000333496 USP17L15C9J2P7 530 aa18.84■□□□□ 0.61
CLN3-201ENST00000333496 USP17L13C9JLJ4 530 aa18.84■□□□□ 0.61
CLN3-201ENST00000333496 USP17L11C9JVI0 530 aa18.84■□□□□ 0.61
CLN3-201ENST00000333496 USP17L18D6R9N7 530 aa18.84■□□□□ 0.61
CLN3-201ENST00000333496 USP17L22D6RA61 530 aa18.84■□□□□ 0.61
CLN3-201ENST00000333496 USP17L17D6RBQ6 530 aa18.84■□□□□ 0.61
CLN3-201ENST00000333496 USP17L19D6RCP7 530 aa18.84■□□□□ 0.61
CLN3-201ENST00000333496 USP17L20D6RJB6 530 aa18.84■□□□□ 0.61
CLN3-201ENST00000333496 FMNL1O95466 1100 aaPredicted RBP18.84■□□□□ 0.61
CLN3-201ENST00000333496 USP17L24Q0WX57 530 aa18.84■□□□□ 0.61
CLN3-201ENST00000333496 RPAP3Q9H6T3 665 aaPredicted RBP18.84■□□□□ 0.61
CLN3-201ENST00000333496 INCENPQ9NQS7 918 aa18.84■□□□□ 0.61
CLN3-201ENST00000333496 DIAPH3Q9NSV4 1193 aa18.84■□□□□ 0.61
CLN3-201ENST00000333496 RBPJLQ9UBG7 517 aa18.84■□□□□ 0.61
CLN3-201ENST00000333496 MORF4L1Q9UBU8 362 aa18.84■□□□□ 0.61
CLN3-201ENST00000333496 ANAPC4Q9UJX5 808 aa18.84■□□□□ 0.61
CLN3-201ENST00000333496 IGKV6D-41A0A0C4DH26 115 aa18.83■□□□□ 0.61
CLN3-201ENST00000333496 PDE4BQ07343 736 aa18.83■□□□□ 0.61
CLN3-201ENST00000333496 ZNF444Q8N0Y2 327 aaPredicted RBP18.83■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms