RNA–Protein interactions for RNA: ENST00000318787.13

HDDC2-201, Transcript of HD domain containing 2, humanhuman

TSL 1 (best)

Gene HDDC2, Length 1,350 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC2-201ENST00000318787 ASCC2Q9H1I8 757 aaPredicted RBP19.28■□□□□ 0.68
HDDC2-201ENST00000318787 SWAP70Q9UH65 585 aa19.28■□□□□ 0.68
HDDC2-201ENST00000318787 MINDY4BA8MYZ0 360 aa19.27■□□□□ 0.68
HDDC2-201ENST00000318787 TDO2P48775 406 aa19.27■□□□□ 0.68
HDDC2-201ENST00000318787 PDE1AP54750 535 aa19.27■□□□□ 0.68
HDDC2-201ENST00000318787 C12orf60Q5U649 245 aa19.27■□□□□ 0.68
HDDC2-201ENST00000318787 USP17L2Q6R6M4 530 aa19.27■□□□□ 0.68
HDDC2-201ENST00000318787 SEC62Q99442 399 aaKnown RBP19.27■□□□□ 0.68
HDDC2-201ENST00000318787 TAOK2Q9UL54 1235 aa19.27■□□□□ 0.68
HDDC2-201ENST00000318787 MYPNQ86TC9 1320 aa19.26■□□□□ 0.67
HDDC2-201ENST00000318787 SALL3Q9BXA9 1300 aa19.26■□□□□ 0.67
HDDC2-201ENST00000318787 HOXD10P28358 340 aa19.26■□□□□ 0.67
HDDC2-201ENST00000318787 CTR9Q6PD62 1173 aa19.26■□□□□ 0.67
HDDC2-201ENST00000318787 RAET1EQ8TD07 263 aa19.26■□□□□ 0.67
HDDC2-201ENST00000318787 ACER1Q8TDN7 264 aa19.26■□□□□ 0.67
HDDC2-201ENST00000318787 SH3TC2Q8TF17 1288 aa19.26■□□□□ 0.67
HDDC2-201ENST00000318787 ARPP21Q9UBL0 812 aaPredicted RBP19.26■□□□□ 0.67
HDDC2-201ENST00000318787 TRIM6-TRIM34B2RNG4 842 aa19.25■□□□□ 0.67
HDDC2-201ENST00000318787 TNPO2O14787 897 aaKnown RBP19.25■□□□□ 0.67
HDDC2-201ENST00000318787 GNRH1P01148 92 aa19.25■□□□□ 0.67
HDDC2-201ENST00000318787 AKR1B1P15121 316 aa19.25■□□□□ 0.67
HDDC2-201ENST00000318787 CDK8P49336 464 aa19.25■□□□□ 0.67
HDDC2-201ENST00000318787 CLEC10AQ8IUN9 316 aa19.25■□□□□ 0.67
HDDC2-201ENST00000318787 EMILIN3Q9NT22 766 aa19.25■□□□□ 0.67
HDDC2-201ENST00000318787 HTTP42858 3142 aa19.25■□□□□ 0.67
HDDC2-201ENST00000318787 DOCK3Q8IZD9 2030 aa19.24■□□□□ 0.67
HDDC2-201ENST00000318787 GSG1L2A8MUP6 293 aa19.24■□□□□ 0.67
HDDC2-201ENST00000318787 GUCY1A2P33402 732 aa19.24■□□□□ 0.67
HDDC2-201ENST00000318787 ATP2B2Q01814 1243 aa19.24■□□□□ 0.67
HDDC2-201ENST00000318787 NBPF11Q86T75 865 aa19.24■□□□□ 0.67
HDDC2-201ENST00000318787 CHD1LQ86WJ1 897 aa19.24■□□□□ 0.67
HDDC2-201ENST00000318787 SMC5Q8IY18 1101 aa19.24■□□□□ 0.67
HDDC2-201ENST00000318787 RILPL2Q969X0 211 aa19.24■□□□□ 0.67
HDDC2-201ENST00000318787 PAGR1Q9BTK6 254 aa19.24■□□□□ 0.67
HDDC2-201ENST00000318787 SRRDQ9UH36 339 aa19.24■□□□□ 0.67
HDDC2-201ENST00000318787 PEX10O60683 326 aa19.23■□□□□ 0.67
HDDC2-201ENST00000318787 GNAT2P19087 354 aa19.23■□□□□ 0.67
HDDC2-201ENST00000318787 GCLCP48506 637 aaPredicted RBP19.23■□□□□ 0.67
HDDC2-201ENST00000318787 USP14P54578 494 aa19.23■□□□□ 0.67
HDDC2-201ENST00000318787 PRKCZQ05513 592 aa19.23■□□□□ 0.67
HDDC2-201ENST00000318787 FAM110CQ1W6H9 321 aa19.23■□□□□ 0.67
HDDC2-201ENST00000318787 CCDC129Q6ZRS4 1044 aa19.23■□□□□ 0.67
HDDC2-201ENST00000318787 TMEM179Q6ZVK1 233 aa19.23■□□□□ 0.67
HDDC2-201ENST00000318787 EVI5LQ96CN4 794 aa19.23■□□□□ 0.67
HDDC2-201ENST00000318787 P2RX7Q99572 595 aaKnown RBP19.23■□□□□ 0.67
HDDC2-201ENST00000318787 BIN2Q9UBW5 565 aaPredicted RBP19.23■□□□□ 0.67
HDDC2-201ENST00000318787 CENPFP49454 3210 aa19.22■□□□□ 0.67
HDDC2-201ENST00000318787 RAD21O60216 631 aa19.22■□□□□ 0.67
HDDC2-201ENST00000318787 PRMT2P55345 433 aa19.22■□□□□ 0.67
HDDC2-201ENST00000318787 HERVK_113P62684 666 aa19.22■□□□□ 0.67
HDDC2-201ENST00000318787 ICA1Q05084 483 aa19.22■□□□□ 0.67
HDDC2-201ENST00000318787 C16orf86Q6ZW13 317 aa19.22■□□□□ 0.67
HDDC2-201ENST00000318787 MKNK2Q9HBH9 465 aa19.22■□□□□ 0.67
HDDC2-201ENST00000318787 EPB41L4AQ9HCS5 686 aaPredicted RBP19.22■□□□□ 0.67
HDDC2-201ENST00000318787 STAP2Q9UGK3 403 aa19.22■□□□□ 0.67
HDDC2-201ENST00000318787 GABRQQ9UN88 632 aa19.22■□□□□ 0.67
HDDC2-201ENST00000318787 MYH4Q9Y623 1939 aa19.22■□□□□ 0.67
HDDC2-201ENST00000318787 VCAM1P19320 739 aa19.21■□□□□ 0.67
HDDC2-201ENST00000318787 ZMYM1Q5SVZ6 1142 aa19.21■□□□□ 0.67
HDDC2-201ENST00000318787 CCAR1Q8IX12 1150 aaKnown RBP19.21■□□□□ 0.67
HDDC2-201ENST00000318787 COA7Q96BR5 231 aa19.21■□□□□ 0.67
HDDC2-201ENST00000318787 NACAP1Q9BZK3 213 aa19.21■□□□□ 0.67
HDDC2-201ENST00000318787 KIAA1683Q9H0B3 1180 aa19.21■□□□□ 0.67
HDDC2-201ENST00000318787 ARHGEF10LQ9HCE6 1279 aa19.21■□□□□ 0.67
HDDC2-201ENST00000318787 RBBP6Q7Z6E9 1792 aaKnown RBP19.21■□□□□ 0.67
HDDC2-201ENST00000318787 HOXA7P31268 230 aaPredicted RBP19.2■□□□□ 0.66
HDDC2-201ENST00000318787 NUCB1Q02818 461 aa19.2■□□□□ 0.66
HDDC2-201ENST00000318787 IFNL3Q8IZI9 196 aa19.2■□□□□ 0.66
HDDC2-201ENST00000318787 TMEM106CQ9BVX2 250 aa19.2■□□□□ 0.66
HDDC2-201ENST00000318787 TANGO6Q9C0B7 1094 aa19.2■□□□□ 0.66
HDDC2-201ENST00000318787 NAPBQ9H115 298 aa19.2■□□□□ 0.66
HDDC2-201ENST00000318787 RPAP3Q9H6T3 665 aaPredicted RBP19.2■□□□□ 0.66
HDDC2-201ENST00000318787 CWC22Q9HCG8 908 aaKnown RBP19.2■□□□□ 0.66
HDDC2-201ENST00000318787 A0A1W2PRG0 241 aa19.19■□□□□ 0.66
HDDC2-201ENST00000318787 USP17L15C9J2P7 530 aa19.19■□□□□ 0.66
HDDC2-201ENST00000318787 PATL2C9JE40 543 aaKnown RBP19.19■□□□□ 0.66
HDDC2-201ENST00000318787 USP17L13C9JLJ4 530 aa19.19■□□□□ 0.66
HDDC2-201ENST00000318787 USP17L11C9JVI0 530 aa19.19■□□□□ 0.66
HDDC2-201ENST00000318787 USP17L18D6R9N7 530 aa19.19■□□□□ 0.66
HDDC2-201ENST00000318787 USP17L22D6RA61 530 aa19.19■□□□□ 0.66
HDDC2-201ENST00000318787 USP17L17D6RBQ6 530 aa19.19■□□□□ 0.66
HDDC2-201ENST00000318787 USP17L19D6RCP7 530 aa19.19■□□□□ 0.66
HDDC2-201ENST00000318787 USP17L20D6RJB6 530 aa19.19■□□□□ 0.66
HDDC2-201ENST00000318787 TNRC18O15417 2968 aaPredicted RBP19.19■□□□□ 0.66
HDDC2-201ENST00000318787 USP17L24Q0WX57 530 aa19.19■□□□□ 0.66
HDDC2-201ENST00000318787 GIMAP6Q6P9H5 292 aa19.19■□□□□ 0.66
HDDC2-201ENST00000318787 ARMC5Q96C12 935 aa19.19■□□□□ 0.66
HDDC2-201ENST00000318787 CCDC17Q96LX7 622 aa19.19■□□□□ 0.66
HDDC2-201ENST00000318787 POTEFA5A3E0 1075 aa19.19■□□□□ 0.66
HDDC2-201ENST00000318787 PRDM1O75626 825 aa19.19■□□□□ 0.66
HDDC2-201ENST00000318787 GRK4P32298 578 aa19.19■□□□□ 0.66
HDDC2-201ENST00000318787 DSG3P32926 999 aa19.19■□□□□ 0.66
HDDC2-201ENST00000318787 FLT3LGP49771 235 aa19.19■□□□□ 0.66
HDDC2-201ENST00000318787 SBK1Q52WX2 424 aa19.19■□□□□ 0.66
HDDC2-201ENST00000318787 SPICE1Q8N0Z3 855 aa19.19■□□□□ 0.66
HDDC2-201ENST00000318787 ZNF333Q96JL9 665 aa19.19■□□□□ 0.66
HDDC2-201ENST00000318787 C12orf42Q96LP6 360 aa19.19■□□□□ 0.66
HDDC2-201ENST00000318787 WDR78Q5VTH9 848 aa19.18■□□□□ 0.66
HDDC2-201ENST00000318787 PLEKHM2Q8IWE5 1019 aa19.18■□□□□ 0.66
HDDC2-201ENST00000318787 GPRC5AQ8NFJ5 357 aa19.18■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms