RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 PHF20L1A8MW92 1017 aa18.08■□□□□ 0.49
PDLIM5-202ENST00000318007 CCT2P78371 535 aaKnown RBP18.08■□□□□ 0.49
PDLIM5-202ENST00000318007 ZYXQ15942 572 aaKnown RBP18.08■□□□□ 0.49
PDLIM5-202ENST00000318007 NUP133Q8WUM0 1156 aa18.08■□□□□ 0.49
PDLIM5-202ENST00000318007 CABP5Q9NP86 173 aa18.08■□□□□ 0.49
PDLIM5-202ENST00000318007 NF2P35240 595 aa18.08■□□□□ 0.48
PDLIM5-202ENST00000318007 CAP2P40123 477 aa18.08■□□□□ 0.48
PDLIM5-202ENST00000318007 NEDD1Q8NHV4 660 aa18.08■□□□□ 0.48
PDLIM5-202ENST00000318007 TMEM87BQ96K49 555 aa18.08■□□□□ 0.48
PDLIM5-202ENST00000318007 ZNF341Q9BYN7 854 aa18.08■□□□□ 0.48
PDLIM5-202ENST00000318007 CLIP2Q9UDT6 1046 aa18.08■□□□□ 0.48
PDLIM5-202ENST00000318007 ZBTB21Q9ULJ3 1066 aa18.08■□□□□ 0.48
PDLIM5-202ENST00000318007 GOLGA8BA8MQT2 603 aa18.07■□□□□ 0.48
PDLIM5-202ENST00000318007 TBC1D12O60347 775 aa18.07■□□□□ 0.48
PDLIM5-202ENST00000318007 USP2O75604 605 aaPredicted RBP18.07■□□□□ 0.48
PDLIM5-202ENST00000318007 GUCY1A2P33402 732 aa18.07■□□□□ 0.48
PDLIM5-202ENST00000318007 ICA1Q05084 483 aa18.07■□□□□ 0.48
PDLIM5-202ENST00000318007 ME3Q16798 604 aa18.07■□□□□ 0.48
PDLIM5-202ENST00000318007 RCSD1Q6JBY9 416 aa18.07■□□□□ 0.48
PDLIM5-202ENST00000318007 NCOA5Q9HCD5 579 aaKnown RBP18.07■□□□□ 0.48
PDLIM5-202ENST00000318007 PPP1R12BO60237 982 aaPredicted RBP18.06■□□□□ 0.48
PDLIM5-202ENST00000318007 ECE1P42892 770 aa18.06■□□□□ 0.48
PDLIM5-202ENST00000318007 SEC23AQ15436 765 aa18.06■□□□□ 0.48
PDLIM5-202ENST00000318007 KLRG1Q96E93 195 aa18.06■□□□□ 0.48
PDLIM5-202ENST00000318007 MTMR4Q9NYA4 1195 aa18.06■□□□□ 0.48
PDLIM5-202ENST00000318007 ISY1Q9ULR0 285 aaKnown RBP18.06■□□□□ 0.48
PDLIM5-202ENST00000318007 KIF3CO14782 793 aa18.06■□□□□ 0.48
PDLIM5-202ENST00000318007 CELF2O95319 508 aaKnown RBP18.06■□□□□ 0.48
PDLIM5-202ENST00000318007 EEF2P13639 858 aaKnown RBP18.06■□□□□ 0.48
PDLIM5-202ENST00000318007 DGKZQ13574 1117 aa18.06■□□□□ 0.48
PDLIM5-202ENST00000318007 CHADLQ6NUI6 762 aa18.06■□□□□ 0.48
PDLIM5-202ENST00000318007 TMEM179Q6ZVK1 233 aa18.06■□□□□ 0.48
PDLIM5-202ENST00000318007 TMX3Q96JJ7 454 aa18.06■□□□□ 0.48
PDLIM5-202ENST00000318007 CCDC17Q96LX7 622 aa18.06■□□□□ 0.48
PDLIM5-202ENST00000318007 KAT14Q9H8E8 782 aa18.06■□□□□ 0.48
PDLIM5-202ENST00000318007 SLC12A7Q9Y666 1083 aa18.06■□□□□ 0.48
PDLIM5-202ENST00000318007 K7ELQ4 463 aaPredicted RBP18.05■□□□□ 0.48
PDLIM5-202ENST00000318007 CCDC83Q8IWF9 413 aa18.05■□□□□ 0.48
PDLIM5-202ENST00000318007 CMTR1Q8N1G2 835 aaKnown RBP18.05■□□□□ 0.48
PDLIM5-202ENST00000318007 ZNF784Q8NCA9 323 aaPredicted RBP18.05■□□□□ 0.48
PDLIM5-202ENST00000318007 CNKSR2Q8WXI2 1034 aa18.05■□□□□ 0.48
PDLIM5-202ENST00000318007 CLMNQ96JQ2 1002 aa18.05■□□□□ 0.48
PDLIM5-202ENST00000318007 TMEM47Q9BQJ4 181 aa18.05■□□□□ 0.48
PDLIM5-202ENST00000318007 LIMCH1Q9UPQ0 1083 aa18.05■□□□□ 0.48
PDLIM5-202ENST00000318007 ATAD5Q96QE3 1844 aa18.05■□□□□ 0.48
PDLIM5-202ENST00000318007 UBE2Q2LH0YL09 131 aa18.04■□□□□ 0.48
PDLIM5-202ENST00000318007 HSP90AA1P07900 732 aaKnown RBP18.04■□□□□ 0.48
PDLIM5-202ENST00000318007 MAP3K10Q02779 954 aa18.04■□□□□ 0.48
PDLIM5-202ENST00000318007 VGLL4Q14135 290 aa18.04■□□□□ 0.48
PDLIM5-202ENST00000318007 ANKRD1Q15327 319 aa18.04■□□□□ 0.48
PDLIM5-202ENST00000318007 APOA5Q6Q788 366 aa18.04■□□□□ 0.48
PDLIM5-202ENST00000318007 CCDC82Q8N4S0 544 aa18.04■□□□□ 0.48
PDLIM5-202ENST00000318007 ACER1Q8TDN7 264 aa18.04■□□□□ 0.48
PDLIM5-202ENST00000318007 HOOK2Q96ED9 719 aa18.04■□□□□ 0.48
PDLIM5-202ENST00000318007 TTLL1O95922 423 aa18.04■□□□□ 0.48
PDLIM5-202ENST00000318007 ZNF654Q8IZM8 581 aa18.04■□□□□ 0.48
PDLIM5-202ENST00000318007 SPICE1Q8N0Z3 855 aa18.04■□□□□ 0.48
PDLIM5-202ENST00000318007 PNMA1Q8ND90 353 aa18.04■□□□□ 0.48
PDLIM5-202ENST00000318007 WDR19Q8NEZ3 1342 aa18.03■□□□□ 0.48
PDLIM5-202ENST00000318007 PDIA3P30101 505 aaKnown RBP18.03■□□□□ 0.48
PDLIM5-202ENST00000318007 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.03■□□□□ 0.481e-6■■■□□ 17.2
PDLIM5-202ENST00000318007 AGXT2Q9BYV1 514 aa18.03■□□□□ 0.48
PDLIM5-202ENST00000318007 ELP3Q9H9T3 547 aa18.03■□□□□ 0.48
PDLIM5-202ENST00000318007 PLIN4Q96Q06 1357 aa18.02■□□□□ 0.48
PDLIM5-202ENST00000318007 IGKV6D-41A0A0C4DH26 115 aa18.02■□□□□ 0.48
PDLIM5-202ENST00000318007 A0A1W2PRG0 241 aa18.02■□□□□ 0.48
PDLIM5-202ENST00000318007 CTNND1O60716 968 aaKnown RBP18.02■□□□□ 0.48
PDLIM5-202ENST00000318007 ASNSP08243 561 aa18.02■□□□□ 0.48
PDLIM5-202ENST00000318007 GOLGA8HP0CJ92 632 aa18.02■□□□□ 0.48
PDLIM5-202ENST00000318007 BECN1Q14457 450 aa18.02■□□□□ 0.48
PDLIM5-202ENST00000318007 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.02■□□□□ 0.48
PDLIM5-202ENST00000318007 SIAH1Q8IUQ4 282 aa18.02■□□□□ 0.48
PDLIM5-202ENST00000318007 SNX21Q969T3 373 aa18.02■□□□□ 0.48
PDLIM5-202ENST00000318007 SLKQ9H2G2 1235 aaPredicted RBP18.02■□□□□ 0.48
PDLIM5-202ENST00000318007 KANSL2Q9H9L4 492 aa18.02■□□□□ 0.48
PDLIM5-202ENST00000318007 PICK1Q9NRD5 415 aa18.02■□□□□ 0.48
PDLIM5-202ENST00000318007 DAXXQ9UER7 740 aaPredicted RBP18.02■□□□□ 0.48
PDLIM5-202ENST00000318007 OTOFQ9HC10 1997 aa18.02■□□□□ 0.48
PDLIM5-202ENST00000318007 TRIM75PA6NK02 468 aa18.02■□□□□ 0.47
PDLIM5-202ENST00000318007 ZBTB43O43298 467 aa18.02■□□□□ 0.47
PDLIM5-202ENST00000318007 ITGBL1O95965 494 aaPredicted RBP18.02■□□□□ 0.47
PDLIM5-202ENST00000318007 LIFRP42702 1097 aa18.02■□□□□ 0.47
PDLIM5-202ENST00000318007 IREB2P48200 963 aaKnown RBP18.02■□□□□ 0.47
PDLIM5-202ENST00000318007 METAP2P50579 478 aaKnown RBP eCLIP18.02■□□□□ 0.47
PDLIM5-202ENST00000318007 SCRN1Q12765 414 aa18.02■□□□□ 0.47
PDLIM5-202ENST00000318007 MKRN3Q13064 507 aaKnown RBP18.02■□□□□ 0.47
PDLIM5-202ENST00000318007 SYNE3Q6ZMZ3 975 aa18.02■□□□□ 0.47
PDLIM5-202ENST00000318007 CATIPQ7Z7H3 387 aa18.02■□□□□ 0.47
PDLIM5-202ENST00000318007 SCYL3Q8IZE3 742 aa18.02■□□□□ 0.47
PDLIM5-202ENST00000318007 FEZ1Q99689 392 aa18.02■□□□□ 0.47
PDLIM5-202ENST00000318007 TCP11L1Q9NUJ3 509 aa18.02■□□□□ 0.47
PDLIM5-202ENST00000318007 ZHX2Q9Y6X8 837 aa18.02■□□□□ 0.47
PDLIM5-202ENST00000318007 FRMPD2Q68DX3 1309 aaPredicted RBP18.02■□□□□ 0.47
PDLIM5-202ENST00000318007 MYH4Q9Y623 1939 aa18.01■□□□□ 0.47
PDLIM5-202ENST00000318007 GOLGA8AA7E2F4 631 aa18.01■□□□□ 0.47
PDLIM5-202ENST00000318007 ST3GAL1Q11201 340 aa18.01■□□□□ 0.47
PDLIM5-202ENST00000318007 SAMD1Q6SPF0 538 aaPredicted RBP18.01■□□□□ 0.47
PDLIM5-202ENST00000318007 SGMS1Q86VZ5 419 aa18.01■□□□□ 0.47
PDLIM5-202ENST00000318007 DGKHQ86XP1 1220 aa18.01■□□□□ 0.47
PDLIM5-202ENST00000318007 NUP88Q99567 741 aaPredicted RBP18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms