RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 GNL3Q9BVP2 549 aaKnown RBP eCLIP5.81□□□□□ -1.48
SCN1A-201ENST00000303395 METTL14Q9HCE5 456 aaKnown RBP5.81□□□□□ -1.48
SCN1A-201ENST00000303395 PCDHB15Q9Y5E8 787 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 STK36Q9NRP7 1315 aa5.81□□□□□ -1.48
SCN1A-201ENST00000303395 INO80Q9ULG1 1556 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-201ENST00000303395 VAMP4O75379 141 aa5.8□□□□□ -1.48
SCN1A-201ENST00000303395 CASP14P31944 242 aa5.8□□□□□ -1.48
SCN1A-201ENST00000303395 SLC8A3P57103 927 aa5.8□□□□□ -1.48
SCN1A-201ENST00000303395 SNCBQ16143 134 aa5.8□□□□□ -1.48
SCN1A-201ENST00000303395 C1orf131Q8NDD1 294 aaKnown RBP5.8□□□□□ -1.48
SCN1A-201ENST00000303395 RRAGDQ9NQL2 400 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-201ENST00000303395 EXOC1Q9NV70 894 aa5.8□□□□□ -1.48
SCN1A-201ENST00000303395 SDAD1Q9NVU7 687 aaKnown RBP eCLIP5.8□□□□□ -1.48
SCN1A-201ENST00000303395 CTNNAL1Q9UBT7 734 aa5.8□□□□□ -1.48
SCN1A-201ENST00000303395 SAR1BQ9Y6B6 198 aa5.8□□□□□ -1.48
SCN1A-201ENST00000303395 ZNF213O14771 459 aa5.8□□□□□ -1.48
SCN1A-201ENST00000303395 RAP1GDS1P52306 607 aa5.8□□□□□ -1.48
SCN1A-201ENST00000303395 MICALL1Q8N3F8 863 aa5.8□□□□□ -1.48
SCN1A-201ENST00000303395 SSH3Q8TE77 659 aa5.8□□□□□ -1.48
SCN1A-201ENST00000303395 HOOK2Q96ED9 719 aa5.8□□□□□ -1.48
SCN1A-201ENST00000303395 MID2Q9UJV3 735 aa5.8□□□□□ -1.48
SCN1A-201ENST00000303395 DYNC1LI1Q9Y6G9 523 aaKnown RBP5.8□□□□□ -1.48
SCN1A-201ENST00000303395 TARBP1Q13395 1621 aaKnown RBP5.8□□□□□ -1.48
SCN1A-201ENST00000303395 SETD1BQ9UPS6 1966 aaKnown RBP5.8□□□□□ -1.48
SCN1A-201ENST00000303395 GOLGA8BA8MQT2 603 aa5.8□□□□□ -1.48
SCN1A-201ENST00000303395 PRPF40BQ6NWY9 871 aaKnown RBP5.8□□□□□ -1.48
SCN1A-201ENST00000303395 TADA2BQ86TJ2 420 aa5.8□□□□□ -1.48
SCN1A-201ENST00000303395 ATL2Q8NHH9 583 aa5.8□□□□□ -1.48
SCN1A-201ENST00000303395 GTF3C6Q969F1 213 aa5.8□□□□□ -1.48
SCN1A-201ENST00000303395 HVCN1Q96D96 273 aa5.8□□□□□ -1.48
SCN1A-201ENST00000303395 NT5C3AQ9H0P0 336 aa5.8□□□□□ -1.48
SCN1A-201ENST00000303395 NUTM2BA6NNL0 878 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-201ENST00000303395 NUTM2EB1AL46 878 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-201ENST00000303395 PFKFB2O60825 505 aa5.8□□□□□ -1.48
SCN1A-201ENST00000303395 ADRM1Q16186 407 aa5.8□□□□□ -1.48
SCN1A-201ENST00000303395 YTHDF3Q7Z739 585 aaKnown RBP5.8□□□□□ -1.48
SCN1A-201ENST00000303395 KIAA1468Q9P260 1216 aa5.8□□□□□ -1.48
SCN1A-201ENST00000303395 RSPH14Q9UHP6 348 aa5.8□□□□□ -1.48
SCN1A-201ENST00000303395 STK10O94804 968 aaKnown RBP5.8□□□□□ -1.48
SCN1A-201ENST00000303395 RPS6KB1P23443 525 aa5.8□□□□□ -1.48
SCN1A-201ENST00000303395 METAP2P50579 478 aaKnown RBP eCLIP5.8□□□□□ -1.48
SCN1A-201ENST00000303395 CDR2Q01850 454 aa5.8□□□□□ -1.48
SCN1A-201ENST00000303395 MCF2L2Q86YR7 1114 aa5.8□□□□□ -1.48
SCN1A-201ENST00000303395 CCDC63Q8NA47 563 aa5.8□□□□□ -1.48
SCN1A-201ENST00000303395 ANKRD2Q9GZV1 360 aa5.8□□□□□ -1.48
SCN1A-201ENST00000303395 ORC3Q9UBD5 711 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-201ENST00000303395 GTF3C5Q9Y5Q8 519 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-201ENST00000303395 SPHKAPQ2M3C7 1700 aa5.8□□□□□ -1.48
SCN1A-201ENST00000303395 ATF3P18847 181 aa5.8□□□□□ -1.48
SCN1A-201ENST00000303395 SLC9C1Q4G0N8 1177 aa5.8□□□□□ -1.48
SCN1A-201ENST00000303395 INTS8Q75QN2 995 aaKnown RBP5.8□□□□□ -1.48
SCN1A-201ENST00000303395 BANK1Q8NDB2 785 aa5.8□□□□□ -1.48
SCN1A-201ENST00000303395 SECISBP2LQ93073 1101 aaKnown RBP5.8□□□□□ -1.48
SCN1A-201ENST00000303395 KDM3AQ9Y4C1 1321 aa5.8□□□□□ -1.48
SCN1A-201ENST00000303395 SLC5A1P13866 664 aa5.8□□□□□ -1.48
SCN1A-201ENST00000303395 ALCAMQ13740 583 aa5.8□□□□□ -1.48
SCN1A-201ENST00000303395 CDK19Q9BWU1 502 aa5.8□□□□□ -1.48
SCN1A-201ENST00000303395 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP5.79□□□□□ -1.48
SCN1A-201ENST00000303395 YTHDC2Q9H6S0 1430 aaKnown RBP5.79□□□□□ -1.48
SCN1A-201ENST00000303395 UBN2Q6ZU65 1347 aa5.79□□□□□ -1.48
SCN1A-201ENST00000303395 MINK1Q8N4C8 1332 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-201ENST00000303395 LRRD1A4D1F6 860 aa5.79□□□□□ -1.48
SCN1A-201ENST00000303395 PALM3A6NDB9 673 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-201ENST00000303395 IPO5O00410 1097 aaKnown RBP5.79□□□□□ -1.48
SCN1A-201ENST00000303395 ARL6IP4Q66PJ3 421 aaKnown RBP5.79□□□□□ -1.48
SCN1A-201ENST00000303395 SDCCAG8Q86SQ7 713 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-201ENST00000303395 PDCD7Q8N8D1 485 aaKnown RBP5.79□□□□□ -1.48
SCN1A-201ENST00000303395 PBKQ96KB5 322 aa5.79□□□□□ -1.48
SCN1A-201ENST00000303395 HAUS8Q9BT25 410 aa5.79□□□□□ -1.48
SCN1A-201ENST00000303395 NAPBQ9H115 298 aa5.79□□□□□ -1.48
SCN1A-201ENST00000303395 WDR17Q8IZU2 1322 aa5.79□□□□□ -1.48
SCN1A-201ENST00000303395 USP42Q9H9J4 1324 aaKnown RBP5.79□□□□□ -1.48
SCN1A-201ENST00000303395 B4DLN1 442 aa5.79□□□□□ -1.48
SCN1A-201ENST00000303395 MRPL12P52815 198 aaKnown RBP5.79□□□□□ -1.48
SCN1A-201ENST00000303395 LRRC8AQ8IWT6 810 aa5.79□□□□□ -1.48
SCN1A-201ENST00000303395 RCOR1Q9UKL0 485 aa5.79□□□□□ -1.48
SCN1A-201ENST00000303395 ZNF644Q9H582 1327 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-201ENST00000303395 ZBTB43O43298 467 aa5.79□□□□□ -1.48
SCN1A-201ENST00000303395 RPS6KA5O75582 802 aa5.79□□□□□ -1.48
SCN1A-201ENST00000303395 SYF2O95926 243 aaKnown RBP5.79□□□□□ -1.48
SCN1A-201ENST00000303395 HAUS3Q68CZ6 603 aa5.79□□□□□ -1.48
SCN1A-201ENST00000303395 SUGP1Q8IWZ8 645 aaKnown RBP5.79□□□□□ -1.48
SCN1A-201ENST00000303395 OR8K1Q8NGG5 319 aa5.79□□□□□ -1.48
SCN1A-201ENST00000303395 ENOX1Q8TC92 643 aaKnown RBP5.79□□□□□ -1.48
SCN1A-201ENST00000303395 PPP1R14BQ96C90 147 aa5.79□□□□□ -1.48
SCN1A-201ENST00000303395 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP5.79□□□□□ -1.48
SCN1A-201ENST00000303395 JADE2Q9NQC1 790 aa5.79□□□□□ -1.48
SCN1A-201ENST00000303395 FAF1Q9UNN5 650 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-201ENST00000303395 MADDQ8WXG6 1647 aa5.79□□□□□ -1.48
SCN1A-201ENST00000303395 CEP104O60308 925 aa5.79□□□□□ -1.48
SCN1A-201ENST00000303395 SUN1O94901 812 aa5.79□□□□□ -1.48
SCN1A-201ENST00000303395 STARD3NLO95772 234 aa5.79□□□□□ -1.48
SCN1A-201ENST00000303395 ANO1Q5XXA6 986 aa5.79□□□□□ -1.48
SCN1A-201ENST00000303395 RAB11FIP4Q86YS3 637 aa5.79□□□□□ -1.48
SCN1A-201ENST00000303395 GPATCH11Q8N954 259 aa5.79□□□□□ -1.48
SCN1A-201ENST00000303395 KIF9Q9HAQ2 790 aa5.79□□□□□ -1.48
SCN1A-201ENST00000303395 CNNM1Q9NRU3 951 aa5.79□□□□□ -1.48
SCN1A-201ENST00000303395 KLHL14Q9P2G3 628 aa5.79□□□□□ -1.48
SCN1A-201ENST00000303395 MTIF2P46199 727 aaKnown RBP5.79□□□□□ -1.48
SCN1A-201ENST00000303395 CRYMQ14894 314 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms