RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 SWAP70Q9UH65 585 aa18.05■□□□□ 0.48
LSM6-201ENST00000296581 SIPA1L1O43166 1804 aa18.05■□□□□ 0.48
LSM6-201ENST00000296581 RAD17O75943 681 aa18.04■□□□□ 0.48
LSM6-201ENST00000296581 DEXIO95424 95 aa18.04■□□□□ 0.48
LSM6-201ENST00000296581 NOVP48745 357 aa18.04■□□□□ 0.48
LSM6-201ENST00000296581 CFAP100Q494V2 611 aa18.04■□□□□ 0.48
LSM6-201ENST00000296581 EHD4Q9H223 541 aa18.04■□□□□ 0.48
LSM6-201ENST00000296581 SERPINB13Q9UIV8 391 aa18.04■□□□□ 0.48
LSM6-201ENST00000296581 HLA-DOAP06340 250 aa18.03■□□□□ 0.48
LSM6-201ENST00000296581 KRT40Q6A162 431 aa18.03■□□□□ 0.48
LSM6-201ENST00000296581 TMTC3Q6ZXV5 915 aa18.03■□□□□ 0.48
LSM6-201ENST00000296581 CTCFLQ8NI51 663 aaPredicted RBP18.03■□□□□ 0.48
LSM6-201ENST00000296581 FAM198AQ9UFP1 575 aa18.03■□□□□ 0.48
LSM6-201ENST00000296581 CFAP45Q9UL16 551 aa18.03■□□□□ 0.48
LSM6-201ENST00000296581 ARFGEF1Q9Y6D6 1849 aa18.03■□□□□ 0.48
LSM6-201ENST00000296581 UBE2Q2LH0YL09 131 aa18.03■□□□□ 0.48
LSM6-201ENST00000296581 KIF23Q02241 960 aaPredicted RBP18.03■□□□□ 0.48
LSM6-201ENST00000296581 CAVIN1Q6NZI2 390 aaKnown RBP18.03■□□□□ 0.48
LSM6-201ENST00000296581 BRAPQ7Z569 592 aa18.03■□□□□ 0.48
LSM6-201ENST00000296581 PNMA1Q8ND90 353 aa18.03■□□□□ 0.48
LSM6-201ENST00000296581 DHX36Q9H2U1 1008 aaKnown RBP18.03■□□□□ 0.48
LSM6-201ENST00000296581 TFIP11Q9UBB9 837 aaKnown RBP18.03■□□□□ 0.48
LSM6-201ENST00000296581 TAOK2Q9UL54 1235 aa18.03■□□□□ 0.48
LSM6-201ENST00000296581 NFKBIEO00221 500 aa18.02■□□□□ 0.48
LSM6-201ENST00000296581 PRPF3O43395 683 aaKnown RBP18.02■□□□□ 0.48
LSM6-201ENST00000296581 PLEKHA8P1O95397 391 aa18.02■□□□□ 0.48
LSM6-201ENST00000296581 GUCY1A2P33402 732 aa18.02■□□□□ 0.48
LSM6-201ENST00000296581 CMTR1Q8N1G2 835 aaKnown RBP18.02■□□□□ 0.48
LSM6-201ENST00000296581 LEO1Q8WVC0 666 aaPredicted RBP18.02■□□□□ 0.48
LSM6-201ENST00000296581 COL2A1P02458 1487 aaPredicted RBP18.02■□□□□ 0.48
LSM6-201ENST00000296581 ZFPM1Q8IX07 1006 aa18.02■□□□□ 0.47
LSM6-201ENST00000296581 AGBL3Q8NEM8 1001 aa18.02■□□□□ 0.47
LSM6-201ENST00000296581 SPATA32Q96LK8 384 aa18.02■□□□□ 0.47
LSM6-201ENST00000296581 ZNF396Q96N95 335 aaPredicted RBP18.02■□□□□ 0.47
LSM6-201ENST00000296581 TMEM47Q9BQJ4 181 aa18.02■□□□□ 0.47
LSM6-201ENST00000296581 GREB1LQ9C091 1923 aaPredicted RBP18.02■□□□□ 0.47
LSM6-201ENST00000296581 LTBP3Q9NS15 1303 aa18.02■□□□□ 0.47
LSM6-201ENST00000296581 CACNB3P54284 484 aa18.01■□□□□ 0.47
LSM6-201ENST00000296581 TRIM29Q14134 588 aa18.01■□□□□ 0.47
LSM6-201ENST00000296581 CCDC82Q8N4S0 544 aa18.01■□□□□ 0.47
LSM6-201ENST00000296581 PRMT6Q96LA8 375 aaPredicted RBP18.01■□□□□ 0.47
LSM6-201ENST00000296581 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.01■□□□□ 0.47
LSM6-201ENST00000296581 KIF28PB7ZC32 967 aa18.01■□□□□ 0.47
LSM6-201ENST00000296581 ENTPD3O75355 529 aa18.01■□□□□ 0.47
LSM6-201ENST00000296581 KIF5BP33176 963 aa18.01■□□□□ 0.47
LSM6-201ENST00000296581 SHMT1P34896 483 aa18.01■□□□□ 0.47
LSM6-201ENST00000296581 GRM4Q14833 912 aa18.01■□□□□ 0.47
LSM6-201ENST00000296581 KLHL34Q8N239 644 aa18.01■□□□□ 0.47
LSM6-201ENST00000296581 CNTNAP5Q8WYK1 1306 aa18.01■□□□□ 0.47
LSM6-201ENST00000296581 TDRD3Q9H7E2 651 aaKnown RBP18.01■□□□□ 0.47
LSM6-201ENST00000296581 HDAC9Q9UKV0 1011 aa18.01■□□□□ 0.47
LSM6-201ENST00000296581 IGKV6D-41A0A0C4DH26 115 aa18■□□□□ 0.47
LSM6-201ENST00000296581 CXCL9Q07325 125 aa18■□□□□ 0.47
LSM6-201ENST00000296581 TMEM63CQ9P1W3 806 aa18■□□□□ 0.47
LSM6-201ENST00000296581 RBM27Q9P2N5 1060 aaKnown RBP18■□□□□ 0.47
LSM6-201ENST00000296581 STX8Q9UNK0 236 aa18■□□□□ 0.47
LSM6-201ENST00000296581 BCS1LQ9Y276 419 aa18■□□□□ 0.47
LSM6-201ENST00000296581 ATRNL1Q5VV63 1379 aa18■□□□□ 0.47
LSM6-201ENST00000296581 SPDYE2BA6NHP3 402 aa18■□□□□ 0.47
LSM6-201ENST00000296581 SPDYE6P0CI01 402 aa18■□□□□ 0.47
LSM6-201ENST00000296581 PKN1Q16512 942 aa18■□□□□ 0.47
LSM6-201ENST00000296581 SH3BP5LQ7L8J4 393 aa18■□□□□ 0.47
LSM6-201ENST00000296581 SRBD1Q8N5C6 995 aaKnown RBP18■□□□□ 0.47
LSM6-201ENST00000296581 CEP95Q96GE4 821 aa18■□□□□ 0.47
LSM6-201ENST00000296581 RCOR1Q9UKL0 485 aa18■□□□□ 0.47
LSM6-201ENST00000296581 DDTLA6NHG4 134 aaPredicted RBP17.99■□□□□ 0.47
LSM6-201ENST00000296581 TPM2P07951 284 aa17.99■□□□□ 0.47
LSM6-201ENST00000296581 AKR1B1P15121 316 aa17.99■□□□□ 0.47
LSM6-201ENST00000296581 U2AF2P26368 475 aaKnown RBP eCLIP17.99■□□□□ 0.47
LSM6-201ENST00000296581 AKAP17AQ02040 695 aaKnown RBP17.99■□□□□ 0.47
LSM6-201ENST00000296581 TCP10Q12799 353 aa17.99■□□□□ 0.47
LSM6-201ENST00000296581 USP28Q96RU2 1077 aa17.99■□□□□ 0.47
LSM6-201ENST00000296581 PI4KBQ9UBF8 816 aa17.99■□□□□ 0.47
LSM6-201ENST00000296581 ZBTB12Q9Y330 459 aaPredicted RBP17.99■□□□□ 0.47
LSM6-201ENST00000296581 MMP1P03956 469 aa17.98■□□□□ 0.47
LSM6-201ENST00000296581 TOP1P11387 765 aaKnown RBP17.98■□□□□ 0.47
LSM6-201ENST00000296581 XRCC6P12956 609 aaKnown RBP eCLIP17.98■□□□□ 0.47
LSM6-201ENST00000296581 ZSCAN23Q3MJ62 389 aa17.98■□□□□ 0.47
LSM6-201ENST00000296581 MYSM1Q5VVJ2 828 aa17.98■□□□□ 0.47
LSM6-201ENST00000296581 OGFOD1Q8N543 542 aa17.98■□□□□ 0.47
LSM6-201ENST00000296581 MTMR14Q8NCE2 650 aa17.98■□□□□ 0.47
LSM6-201ENST00000296581 JDP2Q8WYK2 163 aa17.98■□□□□ 0.47
LSM6-201ENST00000296581 FSD2A1L4K1 749 aa17.98■□□□□ 0.47
LSM6-201ENST00000296581 GNAQP50148 359 aa17.98■□□□□ 0.47
LSM6-201ENST00000296581 ZNF445P59923 1031 aa17.98■□□□□ 0.47
LSM6-201ENST00000296581 CIAPIN1Q6FI81 312 aa17.98■□□□□ 0.47
LSM6-201ENST00000296581 METTL16Q86W50 562 aaKnown RBP17.98■□□□□ 0.47
LSM6-201ENST00000296581 DNAJC18Q9H819 358 aa17.98■□□□□ 0.47
LSM6-201ENST00000296581 MTMR4Q9NYA4 1195 aa17.98■□□□□ 0.47
LSM6-201ENST00000296581 V9GY48 417 aaPredicted RBP17.98■□□□□ 0.47
LSM6-201ENST00000296581 DLGAP5Q15398 846 aa17.97■□□□□ 0.47
LSM6-201ENST00000296581 FOXP4Q8IVH2 680 aaPredicted RBP17.97■□□□□ 0.47
LSM6-201ENST00000296581 SYAP1Q96A49 352 aaPredicted RBP17.97■□□□□ 0.47
LSM6-201ENST00000296581 CCDC17Q96LX7 622 aa17.97■□□□□ 0.47
LSM6-201ENST00000296581 RTEL1Q9NZ71 1219 aa17.97■□□□□ 0.47
LSM6-201ENST00000296581 MAD2L2Q9UI95 211 aa17.97■□□□□ 0.47
LSM6-201ENST00000296581 ISY1Q9ULR0 285 aaKnown RBP17.97■□□□□ 0.47
LSM6-201ENST00000296581 NLGN2Q8NFZ4 835 aa17.97■□□□□ 0.47
LSM6-201ENST00000296581 PALM3A6NDB9 673 aaPredicted RBP17.96■□□□□ 0.47
LSM6-201ENST00000296581 PGBD1Q96JS3 809 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms