RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 TMX1Q9H3N1 280 aa5.9□□□□□ -1.46
CD44-202ENST00000278385 CYP8B1Q9UNU6 501 aa5.9□□□□□ -1.46
CD44-202ENST00000278385 INPP5FQ9Y2H2 1132 aa5.9□□□□□ -1.46
CD44-202ENST00000278385 FYCO1Q9BQS8 1478 aa5.9□□□□□ -1.47
CD44-202ENST00000278385 EXOC5O00471 708 aa5.89□□□□□ -1.47
CD44-202ENST00000278385 PPP1R12AO14974 1030 aaPredicted RBP5.89□□□□□ -1.47
CD44-202ENST00000278385 ITGB2P05107 769 aa5.89□□□□□ -1.47
CD44-202ENST00000278385 AMPD3Q01432 767 aa5.89□□□□□ -1.47
CD44-202ENST00000278385 FAAP100Q0VG06 881 aa5.89□□□□□ -1.47
CD44-202ENST00000278385 PLEKHG4Q58EX7 1191 aa5.89□□□□□ -1.47
CD44-202ENST00000278385 MAP1SQ66K74 1059 aaPredicted RBP5.89□□□□□ -1.47
CD44-202ENST00000278385 LLGL2Q6P1M3 1020 aa5.89□□□□□ -1.47
CD44-202ENST00000278385 MCF2L2Q86YR7 1114 aa5.89□□□□□ -1.47
CD44-202ENST00000278385 C3orf58Q8NDZ4 430 aa5.89□□□□□ -1.47
CD44-202ENST00000278385 ANKRD24Q8TF21 1146 aa5.89□□□□□ -1.47
CD44-202ENST00000278385 C8orf48Q96LL4 319 aa5.89□□□□□ -1.47
CD44-202ENST00000278385 MYRFLQ96LU7 910 aa5.89□□□□□ -1.47
CD44-202ENST00000278385 NECAB3Q96P71 396 aaPredicted RBP5.89□□□□□ -1.47
CD44-202ENST00000278385 SENP7Q9BQF6 1050 aa5.89□□□□□ -1.47
CD44-202ENST00000278385 ATXN3LQ9H3M9 355 aa5.89□□□□□ -1.47
CD44-202ENST00000278385 SSU72Q9NP77 194 aaKnown RBP5.89□□□□□ -1.47
CD44-202ENST00000278385 CFDP1Q9UEE9 299 aaPredicted RBP5.89□□□□□ -1.47
CD44-202ENST00000278385 MTUS2Q5JR59 1369 aa5.89□□□□□ -1.47
CD44-202ENST00000278385 CFAP74Q9C0B2 1584 aa5.89□□□□□ -1.47
CD44-202ENST00000278385 AOC2O75106 756 aa5.88□□□□□ -1.47
CD44-202ENST00000278385 FGRP09769 529 aa5.88□□□□□ -1.47
CD44-202ENST00000278385 ASPAP45381 313 aa5.88□□□□□ -1.47
CD44-202ENST00000278385 GYS2P54840 703 aa5.88□□□□□ -1.47
CD44-202ENST00000278385 EVA1CP58658 441 aa5.88□□□□□ -1.47
CD44-202ENST00000278385 PWP1Q13610 501 aa5.88□□□□□ -1.47
CD44-202ENST00000278385 MLECQ14165 292 aa5.88□□□□□ -1.47
CD44-202ENST00000278385 MAP7Q14244 749 aa5.88□□□□□ -1.47
CD44-202ENST00000278385 SCARA3Q6AZY7 606 aa5.88□□□□□ -1.47
CD44-202ENST00000278385 PRR23CQ6ZRP0 262 aa5.88□□□□□ -1.47
CD44-202ENST00000278385 PPP1R3FQ6ZSY5 799 aaPredicted RBP5.88□□□□□ -1.47
CD44-202ENST00000278385 FAM43BQ6ZT52 329 aaPredicted RBP5.88□□□□□ -1.47
CD44-202ENST00000278385 BEND4Q6ZU67 534 aa5.88□□□□□ -1.47
CD44-202ENST00000278385 CLEC10AQ8IUN9 316 aa5.88□□□□□ -1.47
CD44-202ENST00000278385 CRELD1Q96HD1 420 aa5.88□□□□□ -1.47
CD44-202ENST00000278385 FAM46AQ96IP4 442 aaKnown RBP5.88□□□□□ -1.47
CD44-202ENST00000278385 UBL7Q96S82 380 aaPredicted RBP5.88□□□□□ -1.47
CD44-202ENST00000278385 TRIM56Q9BRZ2 755 aaKnown RBP5.88□□□□□ -1.47
CD44-202ENST00000278385 CEP162Q5TB80 1403 aa5.88□□□□□ -1.47
CD44-202ENST00000278385 ATP10AO60312 1499 aa5.88□□□□□ -1.47
CD44-202ENST00000278385 ARHGAP5Q13017 1502 aa5.88□□□□□ -1.47
CD44-202ENST00000278385 TTC37Q6PGP7 1564 aa5.88□□□□□ -1.47
CD44-202ENST00000278385 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP5.87□□□□□ -1.47
CD44-202ENST00000278385 FAM95CA0A1B0GW59 222 aa5.87□□□□□ -1.47
CD44-202ENST00000278385 CCDC189A1A4V9 331 aa5.87□□□□□ -1.47
CD44-202ENST00000278385 VIL1P09327 827 aaKnown RBP5.87□□□□□ -1.47
CD44-202ENST00000278385 ADH5P11766 374 aa5.87□□□□□ -1.47
CD44-202ENST00000278385 LIG1P18858 919 aa5.87□□□□□ -1.47
CD44-202ENST00000278385 RAB6AP20340 208 aa5.87□□□□□ -1.47
CD44-202ENST00000278385 MAP4P27816 1152 aaKnown RBP5.87□□□□□ -1.47
CD44-202ENST00000278385 PREPP48147 710 aa5.87□□□□□ -1.47
CD44-202ENST00000278385 ST13P50502 369 aaKnown RBP5.87□□□□□ -1.47
CD44-202ENST00000278385 HNRNPMP52272 730 aaKnown RBP eCLIP5.87□□□□□ -1.47
CD44-202ENST00000278385 ID3Q02535 119 aa5.87□□□□□ -1.47
CD44-202ENST00000278385 UBE4AQ14139 1066 aa5.87□□□□□ -1.47
CD44-202ENST00000278385 NFKBIBQ15653 356 aa5.87□□□□□ -1.47
CD44-202ENST00000278385 WDR78Q5VTH9 848 aa5.87□□□□□ -1.47
CD44-202ENST00000278385 TTBK2Q6IQ55 1244 aa5.87□□□□□ -1.47
CD44-202ENST00000278385 VPS37DQ86XT2 251 aa5.87□□□□□ -1.47
CD44-202ENST00000278385 RELL1Q8IUW5 271 aa5.87□□□□□ -1.47
CD44-202ENST00000278385 FAM20CQ8IXL6 584 aa5.87□□□□□ -1.47
CD44-202ENST00000278385 MKL1Q969V6 931 aa5.87□□□□□ -1.47
CD44-202ENST00000278385 SSBP4Q9BWG4 385 aaPredicted RBP5.87□□□□□ -1.47
CD44-202ENST00000278385 PCGF6Q9BYE7 350 aa5.87□□□□□ -1.47
CD44-202ENST00000278385 JADE2Q9NQC1 790 aa5.87□□□□□ -1.47
CD44-202ENST00000278385 TCEAL9Q9UHQ7 104 aa5.87□□□□□ -1.47
CD44-202ENST00000278385 SYNGAP1Q96PV0 1343 aa5.87□□□□□ -1.47
CD44-202ENST00000278385 CCNB3Q8WWL7 1395 aa5.87□□□□□ -1.47
CD44-202ENST00000278385 YEATS2Q9ULM3 1422 aa5.87□□□□□ -1.47
CD44-202ENST00000278385 ZNF518AQ6AHZ1 1483 aa5.87□□□□□ -1.47
CD44-202ENST00000278385 KIF14Q15058 1648 aa5.87□□□□□ -1.47
CD44-202ENST00000278385 FRMPD1Q5SYB0 1578 aa5.86□□□□□ -1.47
CD44-202ENST00000278385 ZMYM4Q5VZL5 1548 aa5.86□□□□□ -1.47
CD44-202ENST00000278385 ZFYVE16Q7Z3T8 1539 aa5.86□□□□□ -1.47
CD44-202ENST00000278385 GPATCH8Q9UKJ3 1502 aaKnown RBP5.86□□□□□ -1.47
CD44-202ENST00000278385 PTPRMP28827 1452 aa5.86□□□□□ -1.47
CD44-202ENST00000278385 MLH3Q9UHC1 1453 aa5.86□□□□□ -1.47
CD44-202ENST00000278385 C9orf84Q5VXU9 1444 aa5.86□□□□□ -1.47
CD44-202ENST00000278385 KIAA1107Q9UPP5 1409 aa5.86□□□□□ -1.47
CD44-202ENST00000278385 ENC1O14682 589 aa5.86□□□□□ -1.47
CD44-202ENST00000278385 TM4SF5O14894 197 aa5.86□□□□□ -1.47
CD44-202ENST00000278385 DYRK3O43781 588 aa5.86□□□□□ -1.47
CD44-202ENST00000278385 RNGTTO60942 597 aaKnown RBP5.86□□□□□ -1.47
CD44-202ENST00000278385 TRIM37O94972 964 aa5.86□□□□□ -1.47
CD44-202ENST00000278385 DRD2P14416 443 aa5.86□□□□□ -1.47
CD44-202ENST00000278385 BDNFP23560 247 aa5.86□□□□□ -1.47
CD44-202ENST00000278385 OS9Q13438 667 aaPredicted RBP5.86□□□□□ -1.47
CD44-202ENST00000278385 SERINC3Q13530 473 aa5.86□□□□□ -1.47
CD44-202ENST00000278385 RSPO4Q2I0M5 234 aaPredicted RBP5.86□□□□□ -1.47
CD44-202ENST00000278385 ODR4Q5SWX8 454 aa5.86□□□□□ -1.47
CD44-202ENST00000278385 PCNX4Q63HM2 1172 aa5.86□□□□□ -1.47
CD44-202ENST00000278385 CCSAPQ6IQ19 270 aaPredicted RBP5.86□□□□□ -1.47
CD44-202ENST00000278385 ZNF654Q8IZM8 581 aa5.86□□□□□ -1.47
CD44-202ENST00000278385 RELTQ969Z4 430 aa5.86□□□□□ -1.47
CD44-202ENST00000278385 ELMO3Q96BJ8 720 aa5.86□□□□□ -1.47
CD44-202ENST00000278385 RNPC3Q96LT9 517 aaKnown RBP5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms