RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 NEDD4P46934 1319 aa10.36□□□□□ -0.75
PDGFC-201ENST00000274071 HMOX1P09601 288 aa10.35□□□□□ -0.75
PDGFC-201ENST00000274071 PAX3P23760 479 aa10.35□□□□□ -0.75
PDGFC-201ENST00000274071 IL13P35225 146 aa10.35□□□□□ -0.75
PDGFC-201ENST00000274071 ELF3P78545 371 aaPredicted RBP10.35□□□□□ -0.75
PDGFC-201ENST00000274071 PTH1RQ03431 593 aa10.35□□□□□ -0.75
PDGFC-201ENST00000274071 ZRSR2Q15696 482 aaKnown RBP10.35□□□□□ -0.75
PDGFC-201ENST00000274071 ANKRD20A8PQ5CZ79 823 aa10.35□□□□□ -0.75
PDGFC-201ENST00000274071 ACBD5Q5T8D3 534 aaPredicted RBP10.35□□□□□ -0.75
PDGFC-201ENST00000274071 NLRP14Q86W24 1093 aa10.35□□□□□ -0.75
PDGFC-201ENST00000274071 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.35□□□□□ -0.75
PDGFC-201ENST00000274071 DNAAF2Q9NVR5 837 aaKnown RBP10.35□□□□□ -0.75
PDGFC-201ENST00000274071 JAK2O60674 1132 aa10.35□□□□□ -0.75
PDGFC-201ENST00000274071 ABL1P00519 1130 aa10.35□□□□□ -0.75
PDGFC-201ENST00000274071 SCTRP47872 440 aa10.35□□□□□ -0.75
PDGFC-201ENST00000274071 ME1P48163 572 aa10.35□□□□□ -0.75
PDGFC-201ENST00000274071 G3BP1Q13283 466 aaKnown RBP eCLIP10.35□□□□□ -0.75
PDGFC-201ENST00000274071 PPP1R15BQ5SWA1 713 aa10.35□□□□□ -0.75
PDGFC-201ENST00000274071 CRELD2Q6UXH1 353 aaPredicted RBP10.35□□□□□ -0.75
PDGFC-201ENST00000274071 PROCA1Q8NCQ7 364 aaPredicted RBP10.35□□□□□ -0.75
PDGFC-201ENST00000274071 BRF1Q92994 677 aa10.35□□□□□ -0.75
PDGFC-201ENST00000274071 RNPC3Q96LT9 517 aaKnown RBP10.35□□□□□ -0.75
PDGFC-201ENST00000274071 USP28Q96RU2 1077 aa10.35□□□□□ -0.75
PDGFC-201ENST00000274071 NAPGQ99747 312 aaPredicted RBP10.35□□□□□ -0.75
PDGFC-201ENST00000274071 M0R2C6 588 aa10.35□□□□□ -0.75
PDGFC-201ENST00000274071 ATP6V1G1O75348 118 aa10.35□□□□□ -0.75
PDGFC-201ENST00000274071 EPB41P11171 864 aaKnown RBP10.35□□□□□ -0.75
PDGFC-201ENST00000274071 CTCFP49711 727 aaPredicted RBP10.35□□□□□ -0.75
PDGFC-201ENST00000274071 STK3Q13188 491 aa10.35□□□□□ -0.75
PDGFC-201ENST00000274071 SLMAPQ14BN4 828 aa10.35□□□□□ -0.75
PDGFC-201ENST00000274071 PTGISQ16647 500 aa10.35□□□□□ -0.75
PDGFC-201ENST00000274071 RAD9BQ6WBX8 426 aa10.35□□□□□ -0.75
PDGFC-201ENST00000274071 SDCCAG8Q86SQ7 713 aaPredicted RBP10.35□□□□□ -0.75
PDGFC-201ENST00000274071 RANBP17Q9H2T7 1088 aaKnown RBP10.35□□□□□ -0.75
PDGFC-201ENST00000274071 PIDD1Q9HB75 910 aa10.35□□□□□ -0.75
PDGFC-201ENST00000274071 RAB11FIP3O75154 756 aa10.34□□□□□ -0.75
PDGFC-201ENST00000274071 FAM107AO95990 144 aa10.34□□□□□ -0.75
PDGFC-201ENST00000274071 ABL2P42684 1182 aa10.34□□□□□ -0.75
PDGFC-201ENST00000274071 NDUFA8P51970 172 aa10.34□□□□□ -0.75
PDGFC-201ENST00000274071 AMPD2Q01433 879 aa10.34□□□□□ -0.75
PDGFC-201ENST00000274071 NUGGCQ68CJ6 796 aa10.34□□□□□ -0.75
PDGFC-201ENST00000274071 CCDC170Q8IYT3 715 aa10.34□□□□□ -0.75
PDGFC-201ENST00000274071 SH2D3CQ8N5H7 860 aa10.34□□□□□ -0.75
PDGFC-201ENST00000274071 TCEANC2Q96MN5 208 aa10.34□□□□□ -0.75
PDGFC-201ENST00000274071 SLC5A4Q9NY91 659 aa10.34□□□□□ -0.75
PDGFC-201ENST00000274071 TARSL2A2RTX5 802 aaKnown RBP10.34□□□□□ -0.75
PDGFC-201ENST00000274071 H3BQV1 296 aa10.34□□□□□ -0.75
PDGFC-201ENST00000274071 CYP27B1O15528 508 aa10.34□□□□□ -0.75
PDGFC-201ENST00000274071 PPP1R37O75864 691 aa10.34□□□□□ -0.75
PDGFC-201ENST00000274071 IFFO2Q5TF58 517 aa10.34□□□□□ -0.75
PDGFC-201ENST00000274071 DDX46Q7L014 1031 aaKnown RBP10.34□□□□□ -0.75
PDGFC-201ENST00000274071 PHACTR3Q96KR7 559 aa10.34□□□□□ -0.75
PDGFC-201ENST00000274071 PHACTR1Q9C0D0 580 aa10.34□□□□□ -0.75
PDGFC-201ENST00000274071 ZFATQ9P243 1243 aa10.34□□□□□ -0.75
PDGFC-201ENST00000274071 KDRP35968 1356 aa10.34□□□□□ -0.75
PDGFC-201ENST00000274071 LRRC7Q96NW7 1537 aa10.33□□□□□ -0.76
PDGFC-201ENST00000274071 SLC3A2P08195 630 aaKnown RBP10.33□□□□□ -0.76
PDGFC-201ENST00000274071 NBPF7P0C2Y1 421 aaPredicted RBP10.33□□□□□ -0.76
PDGFC-201ENST00000274071 CUL3Q13618 768 aa10.33□□□□□ -0.76
PDGFC-201ENST00000274071 KCTD16Q68DU8 428 aa10.33□□□□□ -0.76
PDGFC-201ENST00000274071 MRPS27Q92552 414 aaKnown RBP10.33□□□□□ -0.76
PDGFC-201ENST00000274071 IQCGQ9H095 443 aaKnown RBP10.33□□□□□ -0.76
PDGFC-201ENST00000274071 DPPA5A6NC42 116 aa10.33□□□□□ -0.76
PDGFC-201ENST00000274071 LRRC10BA6NIK2 292 aa10.33□□□□□ -0.76
PDGFC-201ENST00000274071 KCNA6P17658 529 aa10.33□□□□□ -0.76
PDGFC-201ENST00000274071 MYL5Q02045 173 aa10.33□□□□□ -0.76
PDGFC-201ENST00000274071 AKNAD1Q5T1N1 836 aa10.33□□□□□ -0.76
PDGFC-201ENST00000274071 SPECC1LQ69YQ0 1117 aa10.33□□□□□ -0.76
PDGFC-201ENST00000274071 RRP36Q96EU6 259 aaKnown RBP10.33□□□□□ -0.76
PDGFC-201ENST00000274071 PCDHA7Q9UN72 937 aa10.33□□□□□ -0.76
PDGFC-201ENST00000274071 TOPAZ1Q8N9V7 1692 aa10.33□□□□□ -0.76
PDGFC-201ENST00000274071 USP6P35125 1406 aa10.33□□□□□ -0.76
PDGFC-201ENST00000274071 RIMS1Q86UR5 1692 aaKnown RBP10.33□□□□□ -0.76
PDGFC-201ENST00000274071 DIP2AQ14689 1571 aa10.32□□□□□ -0.76
PDGFC-201ENST00000274071 CEP170BQ9Y4F5 1589 aaPredicted RBP10.32□□□□□ -0.76
PDGFC-201ENST00000274071 DIAPH2O60879 1101 aa10.32□□□□□ -0.76
PDGFC-201ENST00000274071 MYBPC3Q14896 1274 aa10.32□□□□□ -0.76
PDGFC-201ENST00000274071 HIBCHQ6NVY1 386 aaPredicted RBP10.32□□□□□ -0.76
PDGFC-201ENST00000274071 SYCP3Q8IZU3 236 aa10.32□□□□□ -0.76
PDGFC-201ENST00000274071 AENQ8WTP8 325 aaKnown RBP10.32□□□□□ -0.76
PDGFC-201ENST00000274071 MMS19Q96T76 1030 aa10.32□□□□□ -0.76
PDGFC-201ENST00000274071 HINFPQ9BQA5 517 aa10.32□□□□□ -0.76
PDGFC-201ENST00000274071 UBE2OQ9C0C9 1292 aaKnown RBP10.32□□□□□ -0.76
PDGFC-201ENST00000274071 FAM184BQ9ULE4 1060 aa10.32□□□□□ -0.76
PDGFC-201ENST00000274071 MAPK8IP1Q9UQF2 711 aa10.32□□□□□ -0.76
PDGFC-201ENST00000274071 MAP3K13O43283 966 aa10.32□□□□□ -0.76
PDGFC-201ENST00000274071 NECTIN1Q15223 517 aa10.32□□□□□ -0.76
PDGFC-201ENST00000274071 SND1Q7KZF4 910 aaKnown RBP eCLIP10.32□□□□□ -0.76
PDGFC-201ENST00000274071 NGDNQ8NEJ9 315 aaKnown RBP10.32□□□□□ -0.76
PDGFC-201ENST00000274071 CYFIP2Q96F07 1278 aa10.32□□□□□ -0.76
PDGFC-201ENST00000274071 L3MBTL3Q96JM7 780 aaPredicted RBP10.32□□□□□ -0.76
PDGFC-201ENST00000274071 FAM167BQ9BTA0 163 aa10.32□□□□□ -0.76
PDGFC-201ENST00000274071 PCMTD2Q9NV79 361 aa10.32□□□□□ -0.76
PDGFC-201ENST00000274071 EIF4E1BA6NMX2 242 aaKnown RBP10.32□□□□□ -0.76
PDGFC-201ENST00000274071 ATP2C2O75185 946 aa10.32□□□□□ -0.76
PDGFC-201ENST00000274071 NNTQ13423 1086 aa10.32□□□□□ -0.76
PDGFC-201ENST00000274071 MKRN4PQ13434 485 aaPredicted RBP10.32□□□□□ -0.76
PDGFC-201ENST00000274071 CCDC57Q2TAC2 916 aa10.32□□□□□ -0.76
PDGFC-201ENST00000274071 HSP90AA4PQ58FG1 418 aa10.32□□□□□ -0.76
PDGFC-201ENST00000274071 HDGFL1Q5TGJ6 251 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms