RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 SMTNP53814 917 aa11.98□□□□□ -0.49
CD44-201ENST00000263398 ADKP55263 362 aaKnown RBP11.98□□□□□ -0.49
CD44-201ENST00000263398 EIF6P56537 245 aaKnown RBP11.98□□□□□ -0.49
CD44-201ENST00000263398 KLHL30Q0D2K2 578 aa11.98□□□□□ -0.49
CD44-201ENST00000263398 DYMQ7RTS9 669 aa11.98□□□□□ -0.49
CD44-201ENST00000263398 CROCCP2Q86T23 111 aa11.98□□□□□ -0.49
CD44-201ENST00000263398 FANCBQ8NB91 859 aa11.98□□□□□ -0.49
CD44-201ENST00000263398 CDC42BPBQ9Y5S2 1711 aa11.97□□□□□ -0.49
CD44-201ENST00000263398 A0A1W2PQ27 194 aa11.97□□□□□ -0.49
CD44-201ENST00000263398 A0A1W2PQ64 194 aa11.97□□□□□ -0.49
CD44-201ENST00000263398 A0A1W2PQD8 194 aa11.97□□□□□ -0.49
CD44-201ENST00000263398 PHKG2P15735 406 aa11.97□□□□□ -0.49
CD44-201ENST00000263398 RNASE9P60153 205 aaKnown RBP11.97□□□□□ -0.49
CD44-201ENST00000263398 PAK2Q13177 524 aa11.97□□□□□ -0.49
CD44-201ENST00000263398 BIRC3Q13489 604 aa11.97□□□□□ -0.49
CD44-201ENST00000263398 CALCRLQ16602 461 aa11.97□□□□□ -0.49
CD44-201ENST00000263398 CFAP221Q4G0U5 840 aa11.97□□□□□ -0.49
CD44-201ENST00000263398 WDR44Q5JSH3 913 aa11.97□□□□□ -0.49
CD44-201ENST00000263398 IFNL3Q8IZI9 196 aa11.97□□□□□ -0.49
CD44-201ENST00000263398 FAM212AQ96EL1 285 aa11.97□□□□□ -0.49
CD44-201ENST00000263398 ANTXR1Q9H6X2 564 aa11.97□□□□□ -0.49
CD44-201ENST00000263398 DNM3Q9UQ16 869 aa11.97□□□□□ -0.49
CD44-201ENST00000263398 USP17L12C9JPN9 530 aa11.97□□□□□ -0.49
CD44-201ENST00000263398 USP17L21D6R901 530 aa11.97□□□□□ -0.49
CD44-201ENST00000263398 SLC1A4P43007 532 aa11.97□□□□□ -0.49
CD44-201ENST00000263398 CTSWP56202 376 aa11.97□□□□□ -0.49
CD44-201ENST00000263398 PPFIA1Q13136 1202 aa11.97□□□□□ -0.49
CD44-201ENST00000263398 ADCK5Q3MIX3 580 aa11.97□□□□□ -0.49
CD44-201ENST00000263398 UNC5CLQ8IV45 518 aa11.97□□□□□ -0.49
CD44-201ENST00000263398 LRRC8AQ8IWT6 810 aa11.97□□□□□ -0.49
CD44-201ENST00000263398 ZMYM6O95789 1325 aa11.97□□□□□ -0.49
CD44-201ENST00000263398 MYCNP04198 464 aaPredicted RBP11.97□□□□□ -0.49
CD44-201ENST00000263398 BRD3Q15059 726 aa11.97□□□□□ -0.49
CD44-201ENST00000263398 CEP128Q6ZU80 1094 aa11.97□□□□□ -0.49
CD44-201ENST00000263398 BLZF1Q9H2G9 400 aa11.97□□□□□ -0.49
CD44-201ENST00000263398 ARPP21Q9UBL0 812 aaPredicted RBP11.97□□□□□ -0.49
CD44-201ENST00000263398 ZNF215Q9UL58 517 aaPredicted RBP11.97□□□□□ -0.49
CD44-201ENST00000263398 UTP11Q9Y3A2 253 aaKnown RBP11.97□□□□□ -0.49
CD44-201ENST00000263398 ARHGEF35A5YM69 484 aa11.96□□□□□ -0.49
CD44-201ENST00000263398 UBAP1LF5GYI3 381 aa11.96□□□□□ -0.49
CD44-201ENST00000263398 CEP104O60308 925 aa11.96□□□□□ -0.49
CD44-201ENST00000263398 PDIA3P30101 505 aaKnown RBP11.96□□□□□ -0.49
CD44-201ENST00000263398 LONRF3Q496Y0 759 aa11.96□□□□□ -0.49
CD44-201ENST00000263398 UBL4BQ8N7F7 174 aa11.96□□□□□ -0.49
CD44-201ENST00000263398 CCDC63Q8NA47 563 aa11.96□□□□□ -0.49
CD44-201ENST00000263398 CHAMP1Q96JM3 812 aa11.96□□□□□ -0.49
CD44-201ENST00000263398 IFIH1Q9BYX4 1025 aaKnown RBP11.96□□□□□ -0.49
CD44-201ENST00000263398 SAR1BQ9Y6B6 198 aa11.96□□□□□ -0.49
CD44-201ENST00000263398 CD2BP2O95400 341 aaKnown RBP11.96□□□□□ -0.49
CD44-201ENST00000263398 ALDH3A1P30838 453 aa11.96□□□□□ -0.49
CD44-201ENST00000263398 MAP3K9P80192 1104 aa11.96□□□□□ -0.49
CD44-201ENST00000263398 NCBP1Q09161 790 aaKnown RBP11.96□□□□□ -0.49
CD44-201ENST00000263398 INF2Q27J81 1249 aa11.96□□□□□ -0.49
CD44-201ENST00000263398 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.96□□□□□ -0.49
CD44-201ENST00000263398 ADCY10Q96PN6 1610 aa11.96□□□□□ -0.5
CD44-201ENST00000263398 PCCAP05165 728 aaPredicted RBP11.96□□□□□ -0.5
CD44-201ENST00000263398 VIMP08670 466 aaKnown RBP11.96□□□□□ -0.5
CD44-201ENST00000263398 ERCC6LQ2NKX8 1250 aa11.96□□□□□ -0.5
CD44-201ENST00000263398 JDP2Q8WYK2 163 aa11.96□□□□□ -0.5
CD44-201ENST00000263398 ARHGEF10LQ9HCE6 1279 aa11.96□□□□□ -0.5
CD44-201ENST00000263398 TXNDC16Q9P2K2 825 aa11.96□□□□□ -0.5
CD44-201ENST00000263398 CCNL1Q9UK58 526 aaPredicted RBP11.96□□□□□ -0.5
CD44-201ENST00000263398 BTBD18B2RXH4 712 aa11.96□□□□□ -0.5
CD44-201ENST00000263398 ZNF853P0CG23 659 aa11.96□□□□□ -0.5
CD44-201ENST00000263398 OAS2P29728 719 aaKnown RBP11.96□□□□□ -0.5
CD44-201ENST00000263398 RPS6KA1Q15418 735 aa11.96□□□□□ -0.5
CD44-201ENST00000263398 WHAMMP3Q1A5X7 153 aa11.96□□□□□ -0.5
CD44-201ENST00000263398 SND1Q7KZF4 910 aaKnown RBP eCLIP11.96□□□□□ -0.5
CD44-201ENST00000263398 TDRD7Q8NHU6 1098 aaKnown RBP11.96□□□□□ -0.5
CD44-201ENST00000263398 NT5C3AQ9H0P0 336 aa11.96□□□□□ -0.5
CD44-201ENST00000263398 ADCY9O60503 1353 aa11.95□□□□□ -0.5
CD44-201ENST00000263398 CHMP2AO43633 222 aa11.95□□□□□ -0.5
CD44-201ENST00000263398 STX10O60499 249 aa11.95□□□□□ -0.5
CD44-201ENST00000263398 ERCC5P28715 1186 aaPredicted RBP11.95□□□□□ -0.5
CD44-201ENST00000263398 RPS8P62241 208 aaKnown RBP11.95□□□□□ -0.5
CD44-201ENST00000263398 NBPF14Q5TI25 921 aa11.95□□□□□ -0.5
CD44-201ENST00000263398 SFMBT2Q5VUG0 894 aa11.95□□□□□ -0.5
CD44-201ENST00000263398 TTLL7Q6ZT98 887 aa11.95□□□□□ -0.5
CD44-201ENST00000263398 ZNF365Q70YC5 407 aa11.95□□□□□ -0.5
CD44-201ENST00000263398 ZBTB38Q8NAP3 1195 aaPredicted RBP11.95□□□□□ -0.5
CD44-201ENST00000263398 TSC1Q92574 1164 aa11.95□□□□□ -0.5
CD44-201ENST00000263398 FAM207AQ9NSI2 230 aaPredicted RBP11.95□□□□□ -0.5
CD44-201ENST00000263398 RTEL1Q9NZ71 1219 aa11.95□□□□□ -0.5
CD44-201ENST00000263398 STIM2Q9P246 746 aa11.95□□□□□ -0.5
CD44-201ENST00000263398 DBNLQ9UJU6 430 aaKnown RBP11.95□□□□□ -0.5
CD44-201ENST00000263398 KRT5P13647 590 aa11.95□□□□□ -0.5
CD44-201ENST00000263398 DNM2P50570 870 aa11.95□□□□□ -0.5
CD44-201ENST00000263398 SP4Q02446 784 aa11.95□□□□□ -0.5
CD44-201ENST00000263398 NCAPH2Q6IBW4 605 aa11.95□□□□□ -0.5
CD44-201ENST00000263398 TBC1D22AQ8WUA7 517 aa11.95□□□□□ -0.5
CD44-201ENST00000263398 GPR108Q9NPR9 543 aa11.95□□□□□ -0.5
CD44-201ENST00000263398 FANCLQ9NW38 375 aa11.95□□□□□ -0.5
CD44-201ENST00000263398 SWAP70Q9UH65 585 aa11.95□□□□□ -0.5
CD44-201ENST00000263398 PSDA5PKW4 1024 aaPredicted RBP11.95□□□□□ -0.5
CD44-201ENST00000263398 SCRN1Q12765 414 aa11.95□□□□□ -0.5
CD44-201ENST00000263398 UBE3CQ15386 1083 aa11.95□□□□□ -0.5
CD44-201ENST00000263398 MAPKAPK5Q8IW41 473 aa11.95□□□□□ -0.5
CD44-201ENST00000263398 PSMB7Q99436 277 aa11.95□□□□□ -0.5
CD44-201ENST00000263398 EXOC7Q9UPT5 735 aa11.95□□□□□ -0.5
CD44-201ENST00000263398 CCDC169A6NNP5 214 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms