RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 OSBPP22059 807 aa14.2□□□□□ -0.14
USP40-201ENST00000251722 GNG11P61952 73 aa14.2□□□□□ -0.14
USP40-201ENST00000251722 UBE3CQ15386 1083 aa14.2□□□□□ -0.14
USP40-201ENST00000251722 PIK3R5Q8WYR1 880 aa14.2□□□□□ -0.14
USP40-201ENST00000251722 JPH2Q9BR39 696 aaPredicted RBP14.2□□□□□ -0.14
USP40-201ENST00000251722 GTF2IP78347 998 aa14.2□□□□□ -0.14
USP40-201ENST00000251722 PPP1R14CQ8TAE6 165 aa14.2□□□□□ -0.14
USP40-201ENST00000251722 MAP3K4Q9Y6R4 1608 aa14.2□□□□□ -0.14
USP40-201ENST00000251722 OPA1O60313 960 aa14.19□□□□□ -0.14
USP40-201ENST00000251722 CCNT1O60563 726 aaKnown RBP14.19□□□□□ -0.14
USP40-201ENST00000251722 CRKLP46109 303 aaKnown RBP14.19□□□□□ -0.14
USP40-201ENST00000251722 UBXN1Q04323 297 aa14.19□□□□□ -0.14
USP40-201ENST00000251722 CCDC93Q567U6 631 aa14.19□□□□□ -0.14
USP40-201ENST00000251722 FCHSD1Q86WN1 690 aa14.19□□□□□ -0.14
USP40-201ENST00000251722 FAM212AQ96EL1 285 aa14.19□□□□□ -0.14
USP40-201ENST00000251722 VPS18Q9P253 973 aa14.19□□□□□ -0.14
USP40-201ENST00000251722 ADRA2BP18089 450 aa14.19□□□□□ -0.14
USP40-201ENST00000251722 IRX1P78414 480 aaPredicted RBP14.19□□□□□ -0.14
USP40-201ENST00000251722 REXO1Q8N1G1 1221 aaKnown RBP14.19□□□□□ -0.14
USP40-201ENST00000251722 MAK16Q9BXY0 300 aaKnown RBP14.19□□□□□ -0.14
USP40-201ENST00000251722 MYL5Q02045 173 aa14.19□□□□□ -0.14
USP40-201ENST00000251722 BIRC3Q13489 604 aa14.19□□□□□ -0.14
USP40-201ENST00000251722 TGFBRAP1Q8WUH2 860 aa14.19□□□□□ -0.14
USP40-201ENST00000251722 NBPF3Q9H094 633 aa14.19□□□□□ -0.14
USP40-201ENST00000251722 LRWD1Q9UFC0 647 aa14.19□□□□□ -0.14
USP40-201ENST00000251722 METP08581 1390 aa14.19□□□□□ -0.14
USP40-201ENST00000251722 PLEKHG2Q9H7P9 1386 aa14.19□□□□□ -0.14
USP40-201ENST00000251722 STK10O94804 968 aaKnown RBP14.19□□□□□ -0.14
USP40-201ENST00000251722 ZNF365Q70YC5 407 aa14.19□□□□□ -0.14
USP40-201ENST00000251722 MLKLQ8NB16 471 aa14.19□□□□□ -0.14
USP40-201ENST00000251722 MIS12Q9H081 205 aa14.19□□□□□ -0.14
USP40-201ENST00000251722 CDK12Q9NYV4 1490 aaPredicted RBP14.19□□□□□ -0.14
USP40-201ENST00000251722 EEF2P13639 858 aaKnown RBP14.19□□□□□ -0.14
USP40-201ENST00000251722 ARHGAP27Q6ZUM4 889 aa14.19□□□□□ -0.14
USP40-201ENST00000251722 CFAP57Q96MR6 1250 aa14.19□□□□□ -0.14
USP40-201ENST00000251722 V9GY48 417 aaPredicted RBP14.19□□□□□ -0.14
USP40-201ENST00000251722 ZNF804BA4D1E1 1349 aa14.18□□□□□ -0.14
USP40-201ENST00000251722 CEP104O60308 925 aa14.18□□□□□ -0.14
USP40-201ENST00000251722 DNM1Q05193 864 aaKnown RBP14.18□□□□□ -0.14
USP40-201ENST00000251722 CALCRLQ16602 461 aa14.18□□□□□ -0.14
USP40-201ENST00000251722 SEL1L2Q5TEA6 688 aa14.18□□□□□ -0.14
USP40-201ENST00000251722 CLEC4GQ6UXB4 293 aa14.18□□□□□ -0.14
USP40-201ENST00000251722 ARMC9Q7Z3E5 817 aa14.18□□□□□ -0.14
USP40-201ENST00000251722 MTRF1LQ9UGC7 380 aaKnown RBP14.18□□□□□ -0.14
USP40-201ENST00000251722 ZBTB21Q9ULJ3 1066 aa14.18□□□□□ -0.14
USP40-201ENST00000251722 RPAP1Q9BWH6 1393 aaPredicted RBP14.18□□□□□ -0.14
USP40-201ENST00000251722 LOC102724159A0A0B4J2E5 919 aa14.18□□□□□ -0.14
USP40-201ENST00000251722 CCDC169A6NNP5 214 aa14.18□□□□□ -0.14
USP40-201ENST00000251722 PWP2Q15269 919 aaKnown RBP14.18□□□□□ -0.14
USP40-201ENST00000251722 ZNF274Q96GC6 653 aaPredicted RBP14.18□□□□□ -0.14
USP40-201ENST00000251722 SH3GL3Q99963 347 aa14.18□□□□□ -0.14
USP40-201ENST00000251722 CTAGE9A4FU28 777 aa14.18□□□□□ -0.14
USP40-201ENST00000251722 VWA3AA6NCI4 1184 aa14.18□□□□□ -0.14
USP40-201ENST00000251722 MYCLP12524 364 aaPredicted RBP14.18□□□□□ -0.14
USP40-201ENST00000251722 TNNC1P63316 161 aa14.18□□□□□ -0.14
USP40-201ENST00000251722 TFAP4Q01664 338 aa14.18□□□□□ -0.14
USP40-201ENST00000251722 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.18□□□□□ -0.14
USP40-201ENST00000251722 COPRSQ9NQ92 184 aa14.18□□□□□ -0.14
USP40-201ENST00000251722 TRAF5O00463 557 aa14.18□□□□□ -0.14
USP40-201ENST00000251722 ZAP70P43403 619 aa14.18□□□□□ -0.14
USP40-201ENST00000251722 MAPKAPK5Q8IW41 473 aa14.18□□□□□ -0.14
USP40-201ENST00000251722 AOPEPQ8N6M6 819 aa14.18□□□□□ -0.14
USP40-201ENST00000251722 MRFAP1L1Q96HT8 127 aa14.18□□□□□ -0.14
USP40-201ENST00000251722 DHX36Q9H2U1 1008 aaKnown RBP14.18□□□□□ -0.14
USP40-201ENST00000251722 GDPD2Q9HCC8 539 aa14.18□□□□□ -0.14
USP40-201ENST00000251722 ATP6V0A2Q9Y487 856 aa14.18□□□□□ -0.14
USP40-201ENST00000251722 ZEB2O60315 1214 aa14.17□□□□□ -0.14
USP40-201ENST00000251722 TAF5LO75529 589 aa14.17□□□□□ -0.14
USP40-201ENST00000251722 PDE4DQ08499 809 aa14.17□□□□□ -0.14
USP40-201ENST00000251722 EAPPQ56P03 285 aaPredicted RBP14.17□□□□□ -0.14
USP40-201ENST00000251722 ZBTB8OSQ8IWT0 167 aa14.17□□□□□ -0.14
USP40-201ENST00000251722 TCEANC2Q96MN5 208 aa14.17□□□□□ -0.14
USP40-201ENST00000251722 SPATA31E1Q6ZUB1 1445 aa14.17□□□□□ -0.14
USP40-201ENST00000251722 POLR2MP0CAP2 368 aa14.17□□□□□ -0.14
USP40-201ENST00000251722 ATF7P17544 494 aaPredicted RBP14.17□□□□□ -0.14
USP40-201ENST00000251722 SLC8A1P32418 973 aa14.17□□□□□ -0.14
USP40-201ENST00000251722 CCDC92Q53HC0 331 aaPredicted RBP14.17□□□□□ -0.14
USP40-201ENST00000251722 FAM160B1Q5W0V3 765 aa14.17□□□□□ -0.14
USP40-201ENST00000251722 PIK3AP1Q6ZUJ8 805 aa14.17□□□□□ -0.14
USP40-201ENST00000251722 ZBTB24O43167 697 aaPredicted RBP14.17□□□□□ -0.14
USP40-201ENST00000251722 N4BP1O75113 896 aaKnown RBP14.17□□□□□ -0.14
USP40-201ENST00000251722 TYRO3Q06418 890 aa14.17□□□□□ -0.14
USP40-201ENST00000251722 MAGEF1Q9HAY2 307 aa14.17□□□□□ -0.14
USP40-201ENST00000251722 OVOS2A0A0G2JMS6 1433 aa14.17□□□□□ -0.14
USP40-201ENST00000251722 OVOS2A0A0J9YW53 1432 aa14.17□□□□□ -0.14
USP40-201ENST00000251722 OVOS2Q6IE36 1432 aa14.17□□□□□ -0.14
USP40-201ENST00000251722 NPR1P16066 1061 aa14.17□□□□□ -0.14
USP40-201ENST00000251722 ZNF174Q15697 407 aa14.17□□□□□ -0.14
USP40-201ENST00000251722 GPATCH4Q5T3I0 446 aaKnown RBP14.17□□□□□ -0.14
USP40-201ENST00000251722 CDC37L1Q7L3B6 337 aa14.17□□□□□ -0.14
USP40-201ENST00000251722 DIS3L2Q8IYB7 885 aaKnown RBP14.17□□□□□ -0.14
USP40-201ENST00000251722 FBF1Q8TES7 1133 aa14.17□□□□□ -0.14
USP40-201ENST00000251722 ZNF594Q96JF6 807 aaPredicted RBP14.17□□□□□ -0.14
USP40-201ENST00000251722 MYO3BQ8WXR4 1341 aa14.17□□□□□ -0.14
USP40-201ENST00000251722 CERKLQ49MI3 558 aaPredicted RBP14.17□□□□□ -0.14
USP40-201ENST00000251722 GSTA5Q7RTV2 222 aa14.17□□□□□ -0.14
USP40-201ENST00000251722 ANKS4BQ8N8V4 417 aa14.17□□□□□ -0.14
USP40-201ENST00000251722 HAUS7Q99871 368 aa14.17□□□□□ -0.14
USP40-201ENST00000251722 NSMFQ6X4W1 530 aa14.16□□□□□ -0.14
USP40-201ENST00000251722 MAATS1Q7Z4T9 603 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms