RNA–Protein interactions for RNA: ENST00000241393.3

CXCR4-201, Transcript of C-X-C motif chemokine receptor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CXCR4, Length 1,682 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-201ENST00000241393 GALNT6Q8NCL4 622 aa9.69□□□□□ -0.86
CXCR4-201ENST00000241393 ACDQ96AP0 544 aa9.69□□□□□ -0.86
CXCR4-201ENST00000241393 POP1Q99575 1024 aaKnown RBP9.69□□□□□ -0.86
CXCR4-201ENST00000241393 LPIN3Q9BQK8 851 aa9.69□□□□□ -0.86
CXCR4-201ENST00000241393 LNPKQ9C0E8 428 aa9.69□□□□□ -0.86
CXCR4-201ENST00000241393 ADAM19Q9H013 955 aa9.69□□□□□ -0.86
CXCR4-201ENST00000241393 CLEC4MQ9H2X3 399 aaPredicted RBP9.69□□□□□ -0.86
CXCR4-201ENST00000241393 JPH1Q9HDC5 661 aaPredicted RBP9.69□□□□□ -0.86
CXCR4-201ENST00000241393 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.69□□□□□ -0.86
CXCR4-201ENST00000241393 USP54Q70EL1 1684 aa9.69□□□□□ -0.86
CXCR4-201ENST00000241393 CRB1P82279 1406 aa9.68□□□□□ -0.86
CXCR4-201ENST00000241393 SOS1Q07889 1333 aaPredicted RBP9.68□□□□□ -0.86
CXCR4-201ENST00000241393 XRN1Q8IZH2 1706 aaKnown RBP9.68□□□□□ -0.86
CXCR4-201ENST00000241393 OIP5O43482 229 aa9.68□□□□□ -0.86
CXCR4-201ENST00000241393 HTATSF1O43719 755 aaKnown RBP9.68□□□□□ -0.86
CXCR4-201ENST00000241393 ARL4DP49703 201 aa9.68□□□□□ -0.86
CXCR4-201ENST00000241393 FANCCQ00597 558 aa9.68□□□□□ -0.86
CXCR4-201ENST00000241393 CCDC85BQ15834 202 aaPredicted RBP9.68□□□□□ -0.86
CXCR4-201ENST00000241393 THEMISQ8N1K5 641 aaPredicted RBP9.68□□□□□ -0.86
CXCR4-201ENST00000241393 C3orf58Q8NDZ4 430 aa9.68□□□□□ -0.86
CXCR4-201ENST00000241393 RGS12O14924 1447 aa9.68□□□□□ -0.86
CXCR4-201ENST00000241393 NCOA3Q9Y6Q9 1424 aa9.68□□□□□ -0.86
CXCR4-201ENST00000241393 FAM83GA6ND36 823 aa9.67□□□□□ -0.86
CXCR4-201ENST00000241393 GRIA4P48058 902 aa9.67□□□□□ -0.86
CXCR4-201ENST00000241393 ANKRD45Q5TZF3 282 aa9.67□□□□□ -0.86
CXCR4-201ENST00000241393 HSCBQ8IWL3 235 aa9.67□□□□□ -0.86
CXCR4-201ENST00000241393 SIRT2Q8IXJ6 389 aa9.67□□□□□ -0.86
CXCR4-201ENST00000241393 RPAP2Q8IXW5 612 aaPredicted RBP9.67□□□□□ -0.86
CXCR4-201ENST00000241393 DCTPP1Q9H773 170 aa9.67□□□□□ -0.86
CXCR4-201ENST00000241393 CHMP5Q9NZZ3 219 aa9.67□□□□□ -0.86
CXCR4-201ENST00000241393 NAGPAQ9UK23 515 aa9.67□□□□□ -0.86
CXCR4-201ENST00000241393 FMN2Q9NZ56 1722 aa9.67□□□□□ -0.86
CXCR4-201ENST00000241393 MAP3K19Q56UN5 1328 aa9.67□□□□□ -0.86
CXCR4-201ENST00000241393 IGSF1Q8N6C5 1336 aa9.67□□□□□ -0.86
CXCR4-201ENST00000241393 PIK3R2O00459 728 aa9.67□□□□□ -0.86
CXCR4-201ENST00000241393 ELL2O00472 640 aaPredicted RBP9.67□□□□□ -0.86
CXCR4-201ENST00000241393 HDLBPQ00341 1268 aaKnown RBP9.67□□□□□ -0.86
CXCR4-201ENST00000241393 HSP90AB2PQ58FF8 381 aa9.67□□□□□ -0.86
CXCR4-201ENST00000241393 ANKRD44Q8N8A2 993 aa9.67□□□□□ -0.86
CXCR4-201ENST00000241393 ZNF576Q9H609 170 aa9.67□□□□□ -0.86
CXCR4-201ENST00000241393 GGT7Q9UJ14 662 aa9.67□□□□□ -0.86
CXCR4-201ENST00000241393 TRPA1O75762 1119 aa9.66□□□□□ -0.86
CXCR4-201ENST00000241393 MEI1Q5TIA1 1274 aa9.66□□□□□ -0.86
CXCR4-201ENST00000241393 GDF6Q6KF10 455 aaPredicted RBP9.66□□□□□ -0.86
CXCR4-201ENST00000241393 CHSY3Q70JA7 882 aa9.66□□□□□ -0.86
CXCR4-201ENST00000241393 RELL1Q8IUW5 271 aa9.66□□□□□ -0.86
CXCR4-201ENST00000241393 LACRTQ9GZZ8 138 aa9.66□□□□□ -0.86
CXCR4-201ENST00000241393 SLKQ9H2G2 1235 aaPredicted RBP9.66□□□□□ -0.86
CXCR4-201ENST00000241393 CCSER2Q9H7U1 834 aa9.66□□□□□ -0.86
CXCR4-201ENST00000241393 GPN3Q9UHW5 284 aaPredicted RBP9.66□□□□□ -0.86
CXCR4-201ENST00000241393 ATP10DQ9P241 1426 aa9.66□□□□□ -0.86
CXCR4-201ENST00000241393 RTL1A6NKG5 1358 aa9.66□□□□□ -0.86
CXCR4-201ENST00000241393 ZC3H6P61129 1189 aaKnown RBP9.65□□□□□ -0.86
CXCR4-201ENST00000241393 KRT76Q01546 638 aa9.65□□□□□ -0.86
CXCR4-201ENST00000241393 PCDH1Q08174 1060 aa9.65□□□□□ -0.86
CXCR4-201ENST00000241393 GNL2Q13823 731 aaKnown RBP9.65□□□□□ -0.86
CXCR4-201ENST00000241393 DCTN1Q14203 1278 aa9.65□□□□□ -0.86
CXCR4-201ENST00000241393 SPRED3Q2MJR0 410 aa9.65□□□□□ -0.86
CXCR4-201ENST00000241393 WFDC8Q8IUA0 241 aa9.65□□□□□ -0.86
CXCR4-201ENST00000241393 NUDT8Q8WV74 236 aa9.65□□□□□ -0.86
CXCR4-201ENST00000241393 SLC26A8Q96RN1 970 aa9.65□□□□□ -0.86
CXCR4-201ENST00000241393 TGIF2Q9GZN2 237 aa9.65□□□□□ -0.86
CXCR4-201ENST00000241393 SRA1Q9HD15 236 aaKnown RBP9.65□□□□□ -0.86
CXCR4-201ENST00000241393 BABAM1Q9NWV8 329 aa9.65□□□□□ -0.86
CXCR4-201ENST00000241393 FER1L4A9Z1Z3 1794 aa9.65□□□□□ -0.87
CXCR4-201ENST00000241393 CDC45O75419 566 aa9.64□□□□□ -0.87
CXCR4-201ENST00000241393 LMNB1P20700 586 aa9.64□□□□□ -0.87
CXCR4-201ENST00000241393 LDLRAD1Q5T700 205 aa9.64□□□□□ -0.87
CXCR4-201ENST00000241393 NT5DC4Q86YG4 428 aa9.64□□□□□ -0.87
CXCR4-201ENST00000241393 MAP4K3Q8IVH8 894 aa9.64□□□□□ -0.87
CXCR4-201ENST00000241393 ZNF654Q8IZM8 581 aa9.64□□□□□ -0.87
CXCR4-201ENST00000241393 RTF1Q92541 710 aaKnown RBP9.64□□□□□ -0.87
CXCR4-201ENST00000241393 WNT8BQ93098 351 aa9.64□□□□□ -0.87
CXCR4-201ENST00000241393 BTBD6Q96KE9 485 aa9.64□□□□□ -0.87
CXCR4-201ENST00000241393 HHIPQ96QV1 700 aa9.64□□□□□ -0.87
CXCR4-201ENST00000241393 PRDM6Q9NQX0 595 aa9.64□□□□□ -0.87
CXCR4-201ENST00000241393 TMEM39AQ9NV64 488 aa9.64□□□□□ -0.87
CXCR4-201ENST00000241393 SOX13Q9UN79 622 aa9.64□□□□□ -0.87
CXCR4-201ENST00000241393 TRIM33Q9UPN9 1127 aa9.64□□□□□ -0.87
CXCR4-201ENST00000241393 PIK3C2AO00443 1686 aa9.64□□□□□ -0.87
CXCR4-201ENST00000241393 LRRC37A3O60309 1634 aa9.64□□□□□ -0.87
CXCR4-201ENST00000241393 GMPRP36959 345 aa9.64□□□□□ -0.87
CXCR4-201ENST00000241393 IKBKEQ14164 716 aa9.64□□□□□ -0.87
CXCR4-201ENST00000241393 IL22RA1Q8N6P7 574 aa9.64□□□□□ -0.87
CXCR4-201ENST00000241393 NGDNQ8NEJ9 315 aaKnown RBP9.64□□□□□ -0.87
CXCR4-201ENST00000241393 C8orf37Q96NL8 207 aa9.64□□□□□ -0.87
CXCR4-201ENST00000241393 PPME1Q9Y570 386 aa9.64□□□□□ -0.87
CXCR4-201ENST00000241393 METTL12A8MUP2 240 aa9.63□□□□□ -0.87
CXCR4-201ENST00000241393 H3BRJ5 948 aa9.63□□□□□ -0.87
CXCR4-201ENST00000241393 M0R082 166 aa9.63□□□□□ -0.87
CXCR4-201ENST00000241393 DDIT3P35638 169 aa9.63□□□□□ -0.87
CXCR4-201ENST00000241393 CCT4P50991 539 aaKnown RBP9.63□□□□□ -0.87
CXCR4-201ENST00000241393 CEP85Q6P2H3 762 aa9.63□□□□□ -0.87
CXCR4-201ENST00000241393 TPTE2Q6XPS3 522 aa9.63□□□□□ -0.87
CXCR4-201ENST00000241393 MCM10Q7L590 875 aa9.63□□□□□ -0.87
CXCR4-201ENST00000241393 USP48Q86UV5 1035 aa9.63□□□□□ -0.87
CXCR4-201ENST00000241393 ZNF417Q8TAU3 575 aa9.63□□□□□ -0.87
CXCR4-201ENST00000241393 ZNF587Q96SQ5 575 aaPredicted RBP9.63□□□□□ -0.87
CXCR4-201ENST00000241393 RSRP1Q9BUV0 290 aa9.63□□□□□ -0.87
CXCR4-201ENST00000241393 HMMRO75330 724 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms