RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 CHMP4BQ9H444 224 aaKnown RBP26.78■■□□□ 1.88
VTI1B-201ENST00000216456 TMED8Q6PL24 325 aaPredicted RBP26.77■■□□□ 1.88
VTI1B-201ENST00000216456 UBE2Q1Q7Z7E8 422 aa26.77■■□□□ 1.88
VTI1B-201ENST00000216456 CLEC10AQ8IUN9 316 aa26.77■■□□□ 1.88
VTI1B-201ENST00000216456 PLXNB2O15031 1838 aa26.76■■□□□ 1.88
VTI1B-201ENST00000216456 CYP2B6P20813 491 aa26.76■■□□□ 1.87
VTI1B-201ENST00000216456 GPRC5AQ8NFJ5 357 aa26.76■■□□□ 1.87
VTI1B-201ENST00000216456 A0A1W2PRG0 241 aa26.75■■□□□ 1.87
VTI1B-201ENST00000216456 H0YGN5 161 aa26.75■■□□□ 1.87
VTI1B-201ENST00000216456 MPHOSPH10O00566 681 aaKnown RBP26.75■■□□□ 1.87
VTI1B-201ENST00000216456 CNMDO75829 334 aa26.75■■□□□ 1.87
VTI1B-201ENST00000216456 SGPL1O95470 568 aa26.75■■□□□ 1.87
VTI1B-201ENST00000216456 VCAM1P19320 739 aa26.75■■□□□ 1.87
VTI1B-201ENST00000216456 NKX2-3Q8TAU0 364 aa26.75■■□□□ 1.87
VTI1B-201ENST00000216456 C12orf42Q96LP6 360 aa26.75■■□□□ 1.87
VTI1B-201ENST00000216456 ERVK-9P63128 1117 aa26.74■■□□□ 1.87
VTI1B-201ENST00000216456 ERVK-24P63145 666 aa26.74■■□□□ 1.87
VTI1B-201ENST00000216456 TRIB2Q92519 343 aa26.74■■□□□ 1.87
VTI1B-201ENST00000216456 KIAA1683Q9H0B3 1180 aa26.74■■□□□ 1.87
VTI1B-201ENST00000216456 PUS7LQ9H0K6 701 aaKnown RBP26.74■■□□□ 1.87
VTI1B-201ENST00000216456 CABP5Q9NP86 173 aa26.74■■□□□ 1.87
VTI1B-201ENST00000216456 HABP4Q5JVS0 413 aaKnown RBP26.73■■□□□ 1.87
VTI1B-201ENST00000216456 KIAA1755Q5JYT7 1200 aa26.73■■□□□ 1.87
VTI1B-201ENST00000216456 PAK6Q9NQU5 681 aaPredicted RBP26.73■■□□□ 1.87
VTI1B-201ENST00000216456 FARP2O94887 1054 aaPredicted RBP26.72■■□□□ 1.87
VTI1B-201ENST00000216456 CATSPERGQ6ZRH7 1159 aa26.72■■□□□ 1.87
VTI1B-201ENST00000216456 DPF3Q92784 378 aa26.72■■□□□ 1.87
VTI1B-201ENST00000216456 DCTPP1Q9H773 170 aa26.72■■□□□ 1.87
VTI1B-201ENST00000216456 PCDHB15Q9Y5E8 787 aa26.72■■□□□ 1.87
VTI1B-201ENST00000216456 USP17L15C9J2P7 530 aa26.71■■□□□ 1.87
VTI1B-201ENST00000216456 USP17L13C9JLJ4 530 aa26.71■■□□□ 1.87
VTI1B-201ENST00000216456 USP17L11C9JVI0 530 aa26.71■■□□□ 1.87
VTI1B-201ENST00000216456 USP17L18D6R9N7 530 aa26.71■■□□□ 1.87
VTI1B-201ENST00000216456 USP17L22D6RA61 530 aa26.71■■□□□ 1.87
VTI1B-201ENST00000216456 USP17L17D6RBQ6 530 aa26.71■■□□□ 1.87
VTI1B-201ENST00000216456 USP17L19D6RCP7 530 aa26.71■■□□□ 1.87
VTI1B-201ENST00000216456 USP17L20D6RJB6 530 aa26.71■■□□□ 1.87
VTI1B-201ENST00000216456 TFRCP02786 760 aaKnown RBP26.71■■□□□ 1.87
VTI1B-201ENST00000216456 AKR1B1P15121 316 aa26.71■■□□□ 1.87
VTI1B-201ENST00000216456 USP17L24Q0WX57 530 aa26.71■■□□□ 1.87
VTI1B-201ENST00000216456 XRN2Q9H0D6 950 aaKnown RBP eCLIP26.71■■□□□ 1.87
VTI1B-201ENST00000216456 RPAP3Q9H6T3 665 aaPredicted RBP26.71■■□□□ 1.87
VTI1B-201ENST00000216456 COLQQ9Y215 455 aaPredicted RBP26.71■■□□□ 1.87
VTI1B-201ENST00000216456 BAZ2AQ9UIF9 1905 aaKnown RBP26.71■■□□□ 1.87
VTI1B-201ENST00000216456 HMGCRP04035 888 aa26.7■■□□□ 1.86
VTI1B-201ENST00000216456 CCL14Q16627 93 aa26.7■■□□□ 1.86
VTI1B-201ENST00000216456 GPR142Q7Z601 462 aa26.7■■□□□ 1.86
VTI1B-201ENST00000216456 DIS3LQ8TF46 1054 aaKnown RBP26.7■■□□□ 1.86
VTI1B-201ENST00000216456 DDX24Q9GZR7 859 aaKnown RBP eCLIP26.7■■□□□ 1.86
VTI1B-201ENST00000216456 ECHDC1Q9NTX5 307 aa26.7■■□□□ 1.86
VTI1B-201ENST00000216456 BTBD7Q9P203 1132 aa26.7■■□□□ 1.86
VTI1B-201ENST00000216456 USP17L12C9JPN9 530 aa26.69■■□□□ 1.86
VTI1B-201ENST00000216456 USP17L21D6R901 530 aa26.69■■□□□ 1.86
VTI1B-201ENST00000216456 UBE3CQ15386 1083 aa26.69■■□□□ 1.86
VTI1B-201ENST00000216456 SIAH1Q8IUQ4 282 aa26.69■■□□□ 1.86
VTI1B-201ENST00000216456 SLC4A4Q9Y6R1 1079 aa26.69■■□□□ 1.86
VTI1B-201ENST00000216456 CEP290O15078 2479 aa26.68■■□□□ 1.86
VTI1B-201ENST00000216456 USP14P54578 494 aa26.68■■□□□ 1.86
VTI1B-201ENST00000216456 OTUD7AQ8TE49 926 aaPredicted RBP26.68■■□□□ 1.86
VTI1B-201ENST00000216456 NUDT12Q9BQG2 462 aa26.68■■□□□ 1.86
VTI1B-201ENST00000216456 CRISPLD2Q9H0B8 497 aa26.68■■□□□ 1.86
VTI1B-201ENST00000216456 SPDYE16A6NNV3 312 aaPredicted RBP26.67■■□□□ 1.86
VTI1B-201ENST00000216456 MORN1Q5T089 497 aa26.67■■□□□ 1.86
VTI1B-201ENST00000216456 C12orf60Q5U649 245 aa26.67■■□□□ 1.86
VTI1B-201ENST00000216456 USP6NLQ92738 828 aa26.67■■□□□ 1.86
VTI1B-201ENST00000216456 ATP8A2Q9NTI2 1148 aa26.67■■□□□ 1.86
VTI1B-201ENST00000216456 MAPK4P31152 587 aa26.66■■□□□ 1.86
VTI1B-201ENST00000216456 CDK8P49336 464 aa26.66■■□□□ 1.86
VTI1B-201ENST00000216456 PLEKHH3Q7Z736 793 aa26.66■■□□□ 1.86
VTI1B-201ENST00000216456 STK11IPQ8N1F8 1099 aa26.66■■□□□ 1.86
VTI1B-201ENST00000216456 GCC1Q96CN9 775 aa26.66■■□□□ 1.86
VTI1B-201ENST00000216456 PAWRQ96IZ0 340 aaKnown RBP26.66■■□□□ 1.86
VTI1B-201ENST00000216456 RABGAP1Q9Y3P9 1069 aa26.66■■□□□ 1.86
VTI1B-201ENST00000216456 WDR78Q5VTH9 848 aa26.65■■□□□ 1.86
VTI1B-201ENST00000216456 CTR9Q6PD62 1173 aa26.65■■□□□ 1.86
VTI1B-201ENST00000216456 CCAR1Q8IX12 1150 aaKnown RBP26.65■■□□□ 1.86
VTI1B-201ENST00000216456 SPICE1Q8N0Z3 855 aa26.65■■□□□ 1.86
VTI1B-201ENST00000216456 OSBP2Q969R2 916 aa26.65■■□□□ 1.86
VTI1B-201ENST00000216456 MYH7P12883 1935 aa26.65■■□□□ 1.86
VTI1B-201ENST00000216456 PRKAR2AP13861 404 aaKnown RBP26.64■■□□□ 1.86
VTI1B-201ENST00000216456 TMEM179Q6ZVK1 233 aa26.64■■□□□ 1.86
VTI1B-201ENST00000216456 SOCS4Q8WXH5 440 aa26.64■■□□□ 1.86
VTI1B-201ENST00000216456 HMX1Q9NP08 348 aaPredicted RBP26.64■■□□□ 1.86
VTI1B-201ENST00000216456 SWAP70Q9UH65 585 aa26.64■■□□□ 1.86
VTI1B-201ENST00000216456 RPTORQ8N122 1335 aa26.64■■□□□ 1.85
VTI1B-201ENST00000216456 MAP3K21Q5TCX8 1036 aa26.63■■□□□ 1.85
VTI1B-201ENST00000216456 KBTBD3Q8NAB2 608 aa26.63■■□□□ 1.85
VTI1B-201ENST00000216456 GTF3C2Q8WUA4 911 aaPredicted RBP26.63■■□□□ 1.85
VTI1B-201ENST00000216456 STRBPQ96SI9 672 aaKnown RBP26.63■■□□□ 1.85
VTI1B-201ENST00000216456 FLRT1Q9NZU1 646 aa26.63■■□□□ 1.85
VTI1B-201ENST00000216456 PCDH10Q9P2E7 1040 aa26.63■■□□□ 1.85
VTI1B-201ENST00000216456 MNX1P50219 401 aaPredicted RBP26.62■■□□□ 1.85
VTI1B-201ENST00000216456 RRP1P56182 461 aaKnown RBP26.62■■□□□ 1.85
VTI1B-201ENST00000216456 ICA1Q05084 483 aa26.62■■□□□ 1.85
VTI1B-201ENST00000216456 CACNB2Q08289 660 aaPredicted RBP26.62■■□□□ 1.85
VTI1B-201ENST00000216456 CHRDL2Q6WN34 429 aa26.62■■□□□ 1.85
VTI1B-201ENST00000216456 C16orf86Q6ZW13 317 aa26.62■■□□□ 1.85
VTI1B-201ENST00000216456 TANGO6Q9C0B7 1094 aa26.62■■□□□ 1.85
VTI1B-201ENST00000216456 M0R2C6 588 aa26.61■■□□□ 1.85
VTI1B-201ENST00000216456 XRCC5P13010 732 aaKnown RBP26.61■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms