RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 BACE1P56817 501 aa18.43■□□□□ 0.54
SYNE2-228ENST00000639659 HERVK_113P62684 666 aa18.43■□□□□ 0.54
SYNE2-228ENST00000639659 MTX1Q13505 466 aa18.43■□□□□ 0.54
SYNE2-228ENST00000639659 Q7L0L9 218 aa18.43■□□□□ 0.54
SYNE2-228ENST00000639659 GPRC5AQ8NFJ5 357 aa18.43■□□□□ 0.54
SYNE2-228ENST00000639659 CLUAP1Q96AJ1 413 aa18.43■□□□□ 0.54
SYNE2-228ENST00000639659 GDF15Q99988 308 aa18.43■□□□□ 0.54
SYNE2-228ENST00000639659 DHX36Q9H2U1 1008 aaKnown RBP18.43■□□□□ 0.54
SYNE2-228ENST00000639659 TXNRD2Q9NNW7 524 aa18.43■□□□□ 0.54
SYNE2-228ENST00000639659 MORF4L1Q9UBU8 362 aa18.43■□□□□ 0.54
SYNE2-228ENST00000639659 PALD1Q9ULE6 856 aa18.43■□□□□ 0.54
SYNE2-228ENST00000639659 FLT1P17948 1338 aa18.43■□□□□ 0.54
SYNE2-228ENST00000639659 CDK5RAP2Q96SN8 1893 aa18.42■□□□□ 0.54
SYNE2-228ENST00000639659 PLCG2P16885 1265 aa18.42■□□□□ 0.54
SYNE2-228ENST00000639659 JAG1P78504 1218 aa18.42■□□□□ 0.54
SYNE2-228ENST00000639659 ZYXQ15942 572 aaKnown RBP18.42■□□□□ 0.54
SYNE2-228ENST00000639659 DEFB123Q8N688 67 aa18.42■□□□□ 0.54
SYNE2-228ENST00000639659 SOCS4Q8WXH5 440 aa18.42■□□□□ 0.54
SYNE2-228ENST00000639659 WDR18Q9BV38 432 aa18.42■□□□□ 0.54
SYNE2-228ENST00000639659 USP17L10C9JJH3 530 aa18.41■□□□□ 0.54
SYNE2-228ENST00000639659 CCDC158Q5M9N0 1113 aa18.41■□□□□ 0.54
SYNE2-228ENST00000639659 WDR78Q5VTH9 848 aa18.41■□□□□ 0.54
SYNE2-228ENST00000639659 ADGRA1Q86SQ6 560 aa18.41■□□□□ 0.54
SYNE2-228ENST00000639659 FEZ1Q99689 392 aa18.41■□□□□ 0.54
SYNE2-228ENST00000639659 UBE2OQ9C0C9 1292 aaKnown RBP18.41■□□□□ 0.54
SYNE2-228ENST00000639659 DNAJC18Q9H819 358 aa18.41■□□□□ 0.54
SYNE2-228ENST00000639659 OGDHLQ9ULD0 1010 aa18.41■□□□□ 0.54
SYNE2-228ENST00000639659 ZBTB21Q9ULJ3 1066 aa18.41■□□□□ 0.54
SYNE2-228ENST00000639659 COL6A3P12111 3177 aa18.4■□□□□ 0.54
SYNE2-228ENST00000639659 MYO5AQ9Y4I1 1855 aaKnown RBP18.4■□□□□ 0.54
SYNE2-228ENST00000639659 HLA-DOAP06340 250 aa18.4■□□□□ 0.54
SYNE2-228ENST00000639659 MNX1P50219 401 aaPredicted RBP18.4■□□□□ 0.54
SYNE2-228ENST00000639659 CCL14Q16627 93 aa18.4■□□□□ 0.54
SYNE2-228ENST00000639659 DBNDD2Q9BQY9 259 aa18.4■□□□□ 0.54
SYNE2-228ENST00000639659 PORCNQ9H237 461 aa18.4■□□□□ 0.54
SYNE2-228ENST00000639659 NDUFB9Q9Y6M9 179 aa18.4■□□□□ 0.54
SYNE2-228ENST00000639659 LAMA3Q16787 3333 aa18.4■□□□□ 0.54
SYNE2-228ENST00000639659 C19orf81C9J6K1 198 aa18.39■□□□□ 0.53
SYNE2-228ENST00000639659 TRIM27P14373 513 aa18.39■□□□□ 0.53
SYNE2-228ENST00000639659 CCND3P30281 292 aaPredicted RBP18.39■□□□□ 0.53
SYNE2-228ENST00000639659 MAPK4P31152 587 aa18.39■□□□□ 0.53
SYNE2-228ENST00000639659 HOXA7P31268 230 aaPredicted RBP18.39■□□□□ 0.53
SYNE2-228ENST00000639659 BMP8BP34820 402 aa18.39■□□□□ 0.53
SYNE2-228ENST00000639659 RGS2P41220 211 aa18.39■□□□□ 0.53
SYNE2-228ENST00000639659 ERVK-9P63128 1117 aa18.39■□□□□ 0.53
SYNE2-228ENST00000639659 ERVK-24P63145 666 aa18.39■□□□□ 0.53
SYNE2-228ENST00000639659 DYNLL1P63167 89 aaKnown RBP18.39■□□□□ 0.53
SYNE2-228ENST00000639659 CACNB2Q08289 660 aaPredicted RBP18.39■□□□□ 0.53
SYNE2-228ENST00000639659 GPR142Q7Z601 462 aa18.39■□□□□ 0.53
SYNE2-228ENST00000639659 TDHQ8IZJ6 230 aa18.39■□□□□ 0.53
SYNE2-228ENST00000639659 ARHGAP45Q92619 1136 aa18.39■□□□□ 0.53
SYNE2-228ENST00000639659 PFASO15067 1338 aa18.39■□□□□ 0.53
SYNE2-228ENST00000639659 FOCADQ5VW36 1801 aa18.39■□□□□ 0.53
SYNE2-228ENST00000639659 IPO8O15397 1037 aaKnown RBP18.38■□□□□ 0.53
SYNE2-228ENST00000639659 Q3C1V9 767 aa18.38■□□□□ 0.53
SYNE2-228ENST00000639659 TNNI3KQ59H18 835 aa18.38■□□□□ 0.53
SYNE2-228ENST00000639659 MAP3K21Q5TCX8 1036 aa18.38■□□□□ 0.53
SYNE2-228ENST00000639659 PLEKHH3Q7Z736 793 aa18.38■□□□□ 0.53
SYNE2-228ENST00000639659 RBPJLQ9UBG7 517 aa18.38■□□□□ 0.53
SYNE2-228ENST00000639659 FPGT-TNNI3KV9GXZ4 949 aa18.38■□□□□ 0.53
SYNE2-228ENST00000639659 GH2P01242 217 aa18.37■□□□□ 0.53
SYNE2-228ENST00000639659 CYP2E1P05181 493 aaPredicted RBP18.37■□□□□ 0.53
SYNE2-228ENST00000639659 ZAP70P43403 619 aa18.37■□□□□ 0.53
SYNE2-228ENST00000639659 MDM2Q00987 491 aaPredicted RBP18.37■□□□□ 0.53
SYNE2-228ENST00000639659 USP17L2Q6R6M4 530 aa18.37■□□□□ 0.53
SYNE2-228ENST00000639659 ATF7IPQ6VMQ6 1270 aa18.37■□□□□ 0.53
SYNE2-228ENST00000639659 FOXP4Q8IVH2 680 aaPredicted RBP18.37■□□□□ 0.53
SYNE2-228ENST00000639659 TRMT44Q8IYL2 757 aaKnown RBP18.37■□□□□ 0.53
SYNE2-228ENST00000639659 MIGA1Q8NAN2 632 aa18.37■□□□□ 0.53
SYNE2-228ENST00000639659 APBA2Q99767 749 aa18.37■□□□□ 0.53
SYNE2-228ENST00000639659 PIH1D3Q9NQM4 214 aaKnown RBP18.37■□□□□ 0.53
SYNE2-228ENST00000639659 BCAR3O75815 825 aa18.36■□□□□ 0.53
SYNE2-228ENST00000639659 IDH1O75874 414 aaKnown RBP18.36■□□□□ 0.53
SYNE2-228ENST00000639659 XRCC5P13010 732 aaKnown RBP18.36■□□□□ 0.53
SYNE2-228ENST00000639659 CYP7A1P22680 504 aa18.36■□□□□ 0.53
SYNE2-228ENST00000639659 USP5P45974 858 aa18.36■□□□□ 0.53
SYNE2-228ENST00000639659 LRRC26Q2I0M4 334 aa18.36■□□□□ 0.53
SYNE2-228ENST00000639659 C1orf115Q9H7X2 142 aa18.36■□□□□ 0.53
SYNE2-228ENST00000639659 EMILIN3Q9NT22 766 aa18.36■□□□□ 0.53
SYNE2-228ENST00000639659 MYH1P12882 1939 aa18.35■□□□□ 0.53
SYNE2-228ENST00000639659 SURF6O75683 361 aaKnown RBP18.35■□□□□ 0.53
SYNE2-228ENST00000639659 CNGA1P29973 690 aa18.35■□□□□ 0.53
SYNE2-228ENST00000639659 PPP4CP60510 307 aa18.35■□□□□ 0.53
SYNE2-228ENST00000639659 RAB3GAP1Q15042 981 aa18.35■□□□□ 0.53
SYNE2-228ENST00000639659 GTF3C2Q8WUA4 911 aaPredicted RBP18.35■□□□□ 0.53
SYNE2-228ENST00000639659 LRIT3Q3SXY7 679 aa18.34■□□□□ 0.53
SYNE2-228ENST00000639659 MORN1Q5T089 497 aa18.34■□□□□ 0.53
SYNE2-228ENST00000639659 TMEM57Q8N5G2 664 aa18.34■□□□□ 0.53
SYNE2-228ENST00000639659 TLR7Q9NYK1 1049 aaKnown RBP18.34■□□□□ 0.53
SYNE2-228ENST00000639659 FRMPD3Q5JV73 1810 aa18.34■□□□□ 0.53
SYNE2-228ENST00000639659 CCNA1P78396 465 aa18.33■□□□□ 0.52
SYNE2-228ENST00000639659 MAP2K5Q13163 448 aa18.33■□□□□ 0.52
SYNE2-228ENST00000639659 MFSD14CQ5VZR4 134 aa18.33■□□□□ 0.52
SYNE2-228ENST00000639659 USP6NLQ92738 828 aa18.33■□□□□ 0.52
SYNE2-228ENST00000639659 CCDC8Q9H0W5 538 aaPredicted RBP18.33■□□□□ 0.52
SYNE2-228ENST00000639659 GINM1Q9NU53 330 aa18.33■□□□□ 0.52
SYNE2-228ENST00000639659 IVNS1ABPQ9Y6Y0 642 aa18.33■□□□□ 0.52
SYNE2-228ENST00000639659 USP17L15C9J2P7 530 aa18.32■□□□□ 0.52
SYNE2-228ENST00000639659 USP17L13C9JLJ4 530 aa18.32■□□□□ 0.52
SYNE2-228ENST00000639659 USP17L11C9JVI0 530 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms