RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 MIGA1Q8NAN2 632 aa14.11□□□□□ -0.15
CLN3-257ENST00000637110 PAWRQ96IZ0 340 aaKnown RBP14.11□□□□□ -0.15
CLN3-257ENST00000637110 BOLA2Q9H3K6 86 aa14.11□□□□□ -0.15
CLN3-257ENST00000637110 DOCK2Q92608 1830 aa14.11□□□□□ -0.15
CLN3-257ENST00000637110 PHF20L1A8MW92 1017 aa14.1□□□□□ -0.15
CLN3-257ENST00000637110 CRACR2BQ8N4Y2 399 aaPredicted RBP14.1□□□□□ -0.15
CLN3-257ENST00000637110 ANKLE1Q8NAG6 615 aa14.1□□□□□ -0.15
CLN3-257ENST00000637110 CRISPLD2Q9H0B8 497 aa14.1□□□□□ -0.15
CLN3-257ENST00000637110 DHX36Q9H2U1 1008 aaKnown RBP14.1□□□□□ -0.15
CLN3-257ENST00000637110 PAK6Q9NQU5 681 aaPredicted RBP14.1□□□□□ -0.15
CLN3-257ENST00000637110 SAP30BPQ9UHR5 308 aaKnown RBP14.1□□□□□ -0.15
CLN3-257ENST00000637110 ZHX2Q9Y6X8 837 aa14.1□□□□□ -0.15
CLN3-257ENST00000637110 MYO5AQ9Y4I1 1855 aaKnown RBP14.1□□□□□ -0.15
CLN3-257ENST00000637110 MAST2Q6P0Q8 1798 aa14.09□□□□□ -0.15
CLN3-257ENST00000637110 TBC1D12O60347 775 aa14.09□□□□□ -0.15
CLN3-257ENST00000637110 CTNND1O60716 968 aaKnown RBP14.09□□□□□ -0.15
CLN3-257ENST00000637110 BCRP11274 1271 aa14.09□□□□□ -0.15
CLN3-257ENST00000637110 IRF5Q13568 498 aa14.09□□□□□ -0.15
CLN3-257ENST00000637110 SLC9C2Q5TAH2 1124 aa14.09□□□□□ -0.15
CLN3-257ENST00000637110 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.09□□□□□ -0.15
CLN3-257ENST00000637110 PI4KBQ9UBF8 816 aa14.09□□□□□ -0.15
CLN3-257ENST00000637110 ZMYND8Q9ULU4 1186 aaPredicted RBP14.09□□□□□ -0.15
CLN3-257ENST00000637110 GABRQQ9UN88 632 aa14.09□□□□□ -0.15
CLN3-257ENST00000637110 KCNH4Q9UQ05 1017 aa14.09□□□□□ -0.15
CLN3-257ENST00000637110 RPTORQ8N122 1335 aa14.09□□□□□ -0.15
CLN3-257ENST00000637110 ATRNL1Q5VV63 1379 aa14.09□□□□□ -0.15
CLN3-257ENST00000637110 MAGEB6P1A0A0J9YX57 407 aa14.08□□□□□ -0.16
CLN3-257ENST00000637110 HLA-DOAP06340 250 aa14.08□□□□□ -0.16
CLN3-257ENST00000637110 ELNP15502 786 aa14.08□□□□□ -0.16
CLN3-257ENST00000637110 PTPRAP18433 802 aa14.08□□□□□ -0.16
CLN3-257ENST00000637110 MAGEA10P43363 369 aaPredicted RBP14.08□□□□□ -0.16
CLN3-257ENST00000637110 FLT3LGP49771 235 aa14.08□□□□□ -0.16
CLN3-257ENST00000637110 GADL1Q6ZQY3 521 aa14.08□□□□□ -0.16
CLN3-257ENST00000637110 CERS3Q8IU89 383 aa14.08□□□□□ -0.16
CLN3-257ENST00000637110 CRBNQ96SW2 442 aa14.08□□□□□ -0.16
CLN3-257ENST00000637110 UBE2OQ9C0C9 1292 aaKnown RBP14.08□□□□□ -0.16
CLN3-257ENST00000637110 PRDM6Q9NQX0 595 aa14.08□□□□□ -0.16
CLN3-257ENST00000637110 PAG1Q9NWQ8 432 aa14.08□□□□□ -0.16
CLN3-257ENST00000637110 ZBTB47Q9UFB7 747 aaPredicted RBP14.08□□□□□ -0.16
CLN3-257ENST00000637110 PALD1Q9ULE6 856 aa14.08□□□□□ -0.16
CLN3-257ENST00000637110 FLT1P17948 1338 aa14.08□□□□□ -0.16
CLN3-257ENST00000637110 TRIM75PA6NK02 468 aa14.07□□□□□ -0.16
CLN3-257ENST00000637110 CXCL11O14625 94 aa14.07□□□□□ -0.16
CLN3-257ENST00000637110 TNPO2O14787 897 aaKnown RBP14.07□□□□□ -0.16
CLN3-257ENST00000637110 PDE6AP16499 860 aa14.07□□□□□ -0.16
CLN3-257ENST00000637110 ATP5JP18859 108 aa14.07□□□□□ -0.16
CLN3-257ENST00000637110 MAP3K10Q02779 954 aa14.07□□□□□ -0.16
CLN3-257ENST00000637110 FOXP4Q8IVH2 680 aaPredicted RBP14.07□□□□□ -0.16
CLN3-257ENST00000637110 EDC3Q96F86 508 aaKnown RBP14.07□□□□□ -0.16
CLN3-257ENST00000637110 GPATCH3Q96I76 525 aa14.07□□□□□ -0.16
CLN3-257ENST00000637110 DCTPP1Q9H773 170 aa14.07□□□□□ -0.16
CLN3-257ENST00000637110 HERC5Q9UII4 1024 aaKnown RBP14.07□□□□□ -0.16
CLN3-257ENST00000637110 VCANP13611 3396 aa14.06□□□□□ -0.16
CLN3-257ENST00000637110 TMED8Q6PL24 325 aaPredicted RBP14.06□□□□□ -0.16
CLN3-257ENST00000637110 FASTKD5Q7L8L6 764 aaKnown RBP14.06□□□□□ -0.16
CLN3-257ENST00000637110 CCDC84Q86UT8 332 aaPredicted RBP14.06□□□□□ -0.16
CLN3-257ENST00000637110 DIS3LQ8TF46 1054 aaKnown RBP14.06□□□□□ -0.16
CLN3-257ENST00000637110 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.06□□□□□ -0.16
CLN3-257ENST00000637110 NBPF3Q9H094 633 aa14.06□□□□□ -0.16
CLN3-257ENST00000637110 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.06□□□□□ -0.16
CLN3-257ENST00000637110 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.06□□□□□ -0.16
CLN3-257ENST00000637110 PCDHB15Q9Y5E8 787 aa14.06□□□□□ -0.16
CLN3-257ENST00000637110 ZNF532Q9HCE3 1301 aa14.06□□□□□ -0.16
CLN3-257ENST00000637110 COL2A1P02458 1487 aaPredicted RBP14.06□□□□□ -0.16
CLN3-257ENST00000637110 CYP2C8P10632 490 aa14.05□□□□□ -0.16
CLN3-257ENST00000637110 SYN1P17600 705 aa14.05□□□□□ -0.16
CLN3-257ENST00000637110 CAP2P40123 477 aa14.05□□□□□ -0.16
CLN3-257ENST00000637110 FAM109BQ6ICB4 259 aaPredicted RBP14.05□□□□□ -0.16
CLN3-257ENST00000637110 COA7Q96BR5 231 aa14.05□□□□□ -0.16
CLN3-257ENST00000637110 HAUS7Q99871 368 aa14.05□□□□□ -0.16
CLN3-257ENST00000637110 CRNKL1Q9BZJ0 848 aaKnown RBP14.05□□□□□ -0.16
CLN3-257ENST00000637110 ECHDC1Q9NTX5 307 aa14.05□□□□□ -0.16
CLN3-257ENST00000637110 TAOK2Q9UL54 1235 aa14.05□□□□□ -0.16
CLN3-257ENST00000637110 AFG3L2Q9Y4W6 797 aa14.05□□□□□ -0.16
CLN3-257ENST00000637110 POLR3DP05423 398 aaPredicted RBP14.04□□□□□ -0.16
CLN3-257ENST00000637110 SPP2Q13103 211 aa14.04□□□□□ -0.16
CLN3-257ENST00000637110 MOGSQ13724 837 aa14.04□□□□□ -0.16
CLN3-257ENST00000637110 TTC6Q86TZ1 520 aa14.04□□□□□ -0.16
CLN3-257ENST00000637110 C11orf49Q9H6J7 331 aa14.04□□□□□ -0.16
CLN3-257ENST00000637110 AS3MTQ9HBK9 375 aa14.04□□□□□ -0.16
CLN3-257ENST00000637110 DOCK1Q14185 1865 aa14.04□□□□□ -0.16
CLN3-257ENST00000637110 A0A0G2JLL6 359 aaPredicted RBP14.03□□□□□ -0.16
CLN3-257ENST00000637110 USP17L5A8MUK1 530 aa14.03□□□□□ -0.16
CLN3-257ENST00000637110 GDF11O95390 407 aa14.03□□□□□ -0.16
CLN3-257ENST00000637110 ZSCAN25Q6NSZ9 544 aa14.03□□□□□ -0.16
CLN3-257ENST00000637110 PRRT2Q7Z6L0 340 aaPredicted RBP14.03□□□□□ -0.16
CLN3-257ENST00000637110 SMCR8Q8TEV9 937 aaPredicted RBP14.03□□□□□ -0.16
CLN3-257ENST00000637110 RIOK1Q9BRS2 568 aaKnown RBP14.03□□□□□ -0.16
CLN3-257ENST00000637110 SLC45A1Q9Y2W3 748 aa14.03□□□□□ -0.16
CLN3-257ENST00000637110 DDX60LQ5H9U9 1706 aaKnown RBP14.03□□□□□ -0.16
CLN3-257ENST00000637110 DOCK3Q8IZD9 2030 aa14.03□□□□□ -0.16
CLN3-257ENST00000637110 ASNSP08243 561 aa14.02□□□□□ -0.17
CLN3-257ENST00000637110 ADD2P35612 726 aa14.02□□□□□ -0.17
CLN3-257ENST00000637110 RRP1BQ14684 758 aaKnown RBP14.02□□□□□ -0.17
CLN3-257ENST00000637110 TSHZ3Q63HK5 1081 aa14.02□□□□□ -0.17
CLN3-257ENST00000637110 GPAT2Q6NUI2 795 aa14.02□□□□□ -0.17
CLN3-257ENST00000637110 ZNF280CQ8ND82 737 aa14.02□□□□□ -0.17
CLN3-257ENST00000637110 TBC1D2Q9BYX2 928 aa14.02□□□□□ -0.17
CLN3-257ENST00000637110 ARMT1Q9H993 441 aa14.02□□□□□ -0.17
CLN3-257ENST00000637110 MCM9Q9NXL9 1143 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms