RNA–Protein interactions for RNA: ENST00000637107.1

CLN3-256, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,946 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-256ENST00000637107 MIGA2Q7L4E1 593 aa20.33■□□□□ 0.84
CLN3-256ENST00000637107 EPB41L4AQ9HCS5 686 aaPredicted RBP20.33■□□□□ 0.84
CLN3-256ENST00000637107 MCM9Q9NXL9 1143 aa20.33■□□□□ 0.84
CLN3-256ENST00000637107 DDX60LQ5H9U9 1706 aaKnown RBP20.33■□□□□ 0.84
CLN3-256ENST00000637107 PATL2C9JE40 543 aaKnown RBP20.32■□□□□ 0.84
CLN3-256ENST00000637107 APPP05067 770 aa20.32■□□□□ 0.84
CLN3-256ENST00000637107 GNAT2P19087 354 aa20.32■□□□□ 0.84
CLN3-256ENST00000637107 MOB2Q70IA6 237 aa20.32■□□□□ 0.84
CLN3-256ENST00000637107 PANK2Q9BZ23 570 aa20.31■□□□□ 0.84
CLN3-256ENST00000637107 SIPA1L1O43166 1804 aa20.31■□□□□ 0.84
CLN3-256ENST00000637107 COL2A1P02458 1487 aaPredicted RBP20.31■□□□□ 0.84
CLN3-256ENST00000637107 NF2P35240 595 aa20.31■□□□□ 0.84
CLN3-256ENST00000637107 PLCD1P51178 756 aa20.31■□□□□ 0.84
CLN3-256ENST00000637107 ZNF445P59923 1031 aa20.31■□□□□ 0.84
CLN3-256ENST00000637107 CYP2D7A0A087X1C5 515 aa20.3■□□□□ 0.84
CLN3-256ENST00000637107 SMIM22K7EJ46 135 aa20.3■□□□□ 0.84
CLN3-256ENST00000637107 MBD3O95983 291 aa20.3■□□□□ 0.84
CLN3-256ENST00000637107 F13A1P00488 732 aa20.3■□□□□ 0.84
CLN3-256ENST00000637107 CYP2D6P10635 497 aa20.3■□□□□ 0.84
CLN3-256ENST00000637107 HSPD1P10809 573 aaKnown RBP20.3■□□□□ 0.84
CLN3-256ENST00000637107 ZSCAN23Q3MJ62 389 aa20.3■□□□□ 0.84
CLN3-256ENST00000637107 IFNL3Q8IZI9 196 aa20.3■□□□□ 0.84
CLN3-256ENST00000637107 DHX36Q9H2U1 1008 aaKnown RBP20.3■□□□□ 0.84
CLN3-256ENST00000637107 GBA2Q9HCG7 927 aaPredicted RBP20.3■□□□□ 0.84
CLN3-256ENST00000637107 CEP350Q5VT06 3117 aa20.3■□□□□ 0.84
CLN3-256ENST00000637107 FAM196BA6NMK8 535 aa20.29■□□□□ 0.84
CLN3-256ENST00000637107 USP17L12C9JPN9 530 aa20.29■□□□□ 0.84
CLN3-256ENST00000637107 USP17L21D6R901 530 aa20.29■□□□□ 0.84
CLN3-256ENST00000637107 POLR3DP05423 398 aaPredicted RBP20.29■□□□□ 0.84
CLN3-256ENST00000637107 APLP1P51693 650 aa20.29■□□□□ 0.84
CLN3-256ENST00000637107 FOXD4L6Q3SYB3 417 aaPredicted RBP20.29■□□□□ 0.84
CLN3-256ENST00000637107 CTR9Q6PD62 1173 aa20.29■□□□□ 0.84
CLN3-256ENST00000637107 FOXD4L3Q6VB84 417 aaPredicted RBP20.29■□□□□ 0.84
CLN3-256ENST00000637107 STOX1Q6ZVD7 989 aa20.29■□□□□ 0.84
CLN3-256ENST00000637107 RBM27Q9P2N5 1060 aaKnown RBP20.29■□□□□ 0.84
CLN3-256ENST00000637107 PI4KBQ9UBF8 816 aa20.29■□□□□ 0.84
CLN3-256ENST00000637107 TMEM88BA6NKF7 163 aa20.29■□□□□ 0.84
CLN3-256ENST00000637107 DTNBO60941 627 aa20.29■□□□□ 0.84
CLN3-256ENST00000637107 TTLL12Q14166 644 aaPredicted RBP20.29■□□□□ 0.84
CLN3-256ENST00000637107 MTMR6Q9Y217 621 aa20.29■□□□□ 0.84
CLN3-256ENST00000637107 USP2O75604 605 aaPredicted RBP20.28■□□□□ 0.84
CLN3-256ENST00000637107 TDO2P48775 406 aa20.28■□□□□ 0.84
CLN3-256ENST00000637107 GIMAP6Q6P9H5 292 aa20.28■□□□□ 0.84
CLN3-256ENST00000637107 ANGEL1Q9UNK9 670 aaKnown RBP20.28■□□□□ 0.84
CLN3-256ENST00000637107 PCNTO95613 3336 aa20.28■□□□□ 0.84
CLN3-256ENST00000637107 PPP1R12BO60237 982 aaPredicted RBP20.27■□□□□ 0.84
CLN3-256ENST00000637107 HTRA3P83110 453 aa20.27■□□□□ 0.84
CLN3-256ENST00000637107 Q6ZUG5 572 aa20.27■□□□□ 0.84
CLN3-256ENST00000637107 C2orf69Q8N8R5 385 aa20.27■□□□□ 0.84
CLN3-256ENST00000637107 HLA-DOAP06340 250 aa20.27■□□□□ 0.84
CLN3-256ENST00000637107 TMEM87AQ8NBN3 555 aa20.27■□□□□ 0.84
CLN3-256ENST00000637107 NACAP1Q9BZK3 213 aa20.27■□□□□ 0.84
CLN3-256ENST00000637107 NAPBQ9H115 298 aa20.27■□□□□ 0.84
CLN3-256ENST00000637107 DNAJC18Q9H819 358 aa20.27■□□□□ 0.84
CLN3-256ENST00000637107 GDPD2Q9HCC8 539 aa20.27■□□□□ 0.84
CLN3-256ENST00000637107 TMEM63CQ9P1W3 806 aa20.27■□□□□ 0.84
CLN3-256ENST00000637107 PAPPA2Q9BXP8 1791 aa20.26■□□□□ 0.83
CLN3-256ENST00000637107 UBE2Q2LH0YL09 131 aa20.26■□□□□ 0.83
CLN3-256ENST00000637107 FGAP02671 866 aa20.26■□□□□ 0.83
CLN3-256ENST00000637107 HMGB1P09429 215 aaKnown RBP20.26■□□□□ 0.83
CLN3-256ENST00000637107 MAP3K10Q02779 954 aa20.26■□□□□ 0.83
CLN3-256ENST00000637107 C12orf60Q5U649 245 aa20.26■□□□□ 0.83
CLN3-256ENST00000637107 TTC6Q86TZ1 520 aa20.26■□□□□ 0.83
CLN3-256ENST00000637107 HOOK2Q96ED9 719 aa20.26■□□□□ 0.83
CLN3-256ENST00000637107 LAMA4Q16363 1823 aa20.26■□□□□ 0.83
CLN3-256ENST00000637107 DCAF15Q66K64 600 aa20.25■□□□□ 0.83
CLN3-256ENST00000637107 SAPCD2Q86UD0 394 aa20.25■□□□□ 0.83
CLN3-256ENST00000637107 KLRG1Q96E93 195 aa20.25■□□□□ 0.83
CLN3-256ENST00000637107 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.25■□□□□ 0.83
CLN3-256ENST00000637107 ARPP21Q9UBL0 812 aaPredicted RBP20.25■□□□□ 0.83
CLN3-256ENST00000637107 SERPINB13Q9UIV8 391 aa20.25■□□□□ 0.83
CLN3-256ENST00000637107 ATP6V1DQ9Y5K8 247 aa20.25■□□□□ 0.83
CLN3-256ENST00000637107 MINDY4BA8MYZ0 360 aa20.25■□□□□ 0.83
CLN3-256ENST00000637107 TBC1D12O60347 775 aa20.25■□□□□ 0.83
CLN3-256ENST00000637107 PDIA4P13667 645 aaKnown RBP20.25■□□□□ 0.83
CLN3-256ENST00000637107 STK3Q13188 491 aa20.25■□□□□ 0.83
CLN3-256ENST00000637107 DHX32Q7L7V1 743 aaKnown RBP20.25■□□□□ 0.83
CLN3-256ENST00000637107 ARMC9Q7Z3E5 817 aa20.25■□□□□ 0.83
CLN3-256ENST00000637107 METTL16Q86W50 562 aaKnown RBP20.25■□□□□ 0.83
CLN3-256ENST00000637107 FOXP4Q8IVH2 680 aaPredicted RBP20.25■□□□□ 0.83
CLN3-256ENST00000637107 STK11IPQ8N1F8 1099 aa20.25■□□□□ 0.83
CLN3-256ENST00000637107 CRACR2BQ8N4Y2 399 aaPredicted RBP20.25■□□□□ 0.83
CLN3-256ENST00000637107 DYNLL2Q96FJ2 89 aa20.25■□□□□ 0.83
CLN3-256ENST00000637107 CREBZFQ9NS37 354 aa20.25■□□□□ 0.83
CLN3-256ENST00000637107 ABT1Q9ULW3 272 aaKnown RBP20.25■□□□□ 0.83
CLN3-256ENST00000637107 CNPY2Q9Y2B0 182 aa20.25■□□□□ 0.83
CLN3-256ENST00000637107 PHF20L1A8MW92 1017 aa20.24■□□□□ 0.83
CLN3-256ENST00000637107 GADD45BO75293 160 aaPredicted RBP20.24■□□□□ 0.83
CLN3-256ENST00000637107 FKBP1BP68106 108 aa20.24■□□□□ 0.83
CLN3-256ENST00000637107 MAP3K11Q16584 847 aa20.24■□□□□ 0.83
CLN3-256ENST00000637107 SBK1Q52WX2 424 aa20.24■□□□□ 0.83
CLN3-256ENST00000637107 LARP1BQ659C4 914 aaKnown RBP20.24■□□□□ 0.83
CLN3-256ENST00000637107 WRNIP1Q96S55 665 aa20.24■□□□□ 0.83
CLN3-256ENST00000637107 ZNF341Q9BYN7 854 aa20.24■□□□□ 0.83
CLN3-256ENST00000637107 HERC5Q9UII4 1024 aaKnown RBP20.24■□□□□ 0.83
CLN3-256ENST00000637107 TLL2Q9Y6L7 1015 aa20.24■□□□□ 0.83
CLN3-256ENST00000637107 OTOFQ9HC10 1997 aa20.24■□□□□ 0.83
CLN3-256ENST00000637107 E7EWF7 191 aa20.23■□□□□ 0.83
CLN3-256ENST00000637107 HUNKP57058 714 aa20.23■□□□□ 0.83
CLN3-256ENST00000637107 EXOSC10Q01780 885 aaKnown RBP20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms