RNA–Protein interactions for RNA: ENST00000636238.1

CIITA-214, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-214ENST00000636238 TMOD4Q9NZQ9 345 aa9.07□□□□□ -0.96
CIITA-214ENST00000636238 PRKAG2Q9UGJ0 569 aa9.07□□□□□ -0.96
CIITA-214ENST00000636238 UNC80Q8N2C7 3258 aa9.06□□□□□ -0.96
CIITA-214ENST00000636238 BTDP43251 543 aa9.06□□□□□ -0.96
CIITA-214ENST00000636238 HMGCS2P54868 508 aa9.06□□□□□ -0.96
CIITA-214ENST00000636238 RHBDL3P58872 404 aa9.06□□□□□ -0.96
CIITA-214ENST00000636238 CCNA1P78396 465 aa9.06□□□□□ -0.96
CIITA-214ENST00000636238 SMAD3P84022 425 aaKnown RBP9.06□□□□□ -0.96
CIITA-214ENST00000636238 MORN1Q5T089 497 aa9.06□□□□□ -0.96
CIITA-214ENST00000636238 CCDC102BQ68D86 513 aa9.06□□□□□ -0.96
CIITA-214ENST00000636238 LHX8Q68G74 356 aa9.06□□□□□ -0.96
CIITA-214ENST00000636238 METTL16Q86W50 562 aaKnown RBP9.06□□□□□ -0.96
CIITA-214ENST00000636238 SKAP1Q86WV1 359 aa9.06□□□□□ -0.96
CIITA-214ENST00000636238 DDX4Q9NQI0 724 aaKnown RBP9.06□□□□□ -0.96
CIITA-214ENST00000636238 AKAP2Q9Y2D5 859 aa9.06□□□□□ -0.96
CIITA-214ENST00000636238 DNM1LO00429 736 aa9.05□□□□□ -0.96
CIITA-214ENST00000636238 HOXC6P09630 235 aa9.05□□□□□ -0.96
CIITA-214ENST00000636238 PLCG2P16885 1265 aa9.05□□□□□ -0.96
CIITA-214ENST00000636238 CYP2B6P20813 491 aa9.05□□□□□ -0.96
CIITA-214ENST00000636238 PHKA1P46020 1223 aa9.05□□□□□ -0.96
CIITA-214ENST00000636238 HERVK_113P62684 666 aa9.05□□□□□ -0.96
CIITA-214ENST00000636238 CACNB2Q08289 660 aaPredicted RBP9.05□□□□□ -0.96
CIITA-214ENST00000636238 AAMPQ13685 434 aa9.05□□□□□ -0.96
CIITA-214ENST00000636238 LRRC26Q2I0M4 334 aa9.05□□□□□ -0.96
CIITA-214ENST00000636238 MFSD14CQ5VZR4 134 aa9.05□□□□□ -0.96
CIITA-214ENST00000636238 ERICH6Q7L0X2 663 aa9.05□□□□□ -0.96
CIITA-214ENST00000636238 PLEKHH3Q7Z736 793 aa9.05□□□□□ -0.96
CIITA-214ENST00000636238 FOXP4Q8IVH2 680 aaPredicted RBP9.05□□□□□ -0.96
CIITA-214ENST00000636238 CCAR1Q8IX12 1150 aaKnown RBP9.05□□□□□ -0.96
CIITA-214ENST00000636238 KLHDC4Q8TBB5 520 aa9.05□□□□□ -0.96
CIITA-214ENST00000636238 MEIS3Q99687 375 aa9.05□□□□□ -0.96
CIITA-214ENST00000636238 COPRSQ9NQ92 184 aa9.05□□□□□ -0.96
CIITA-214ENST00000636238 PI4KBQ9UBF8 816 aa9.05□□□□□ -0.96
CIITA-214ENST00000636238 RABGAP1Q9Y3P9 1069 aa9.05□□□□□ -0.96
CIITA-214ENST00000636238 ERVK-9P63128 1117 aa9.04□□□□□ -0.96
CIITA-214ENST00000636238 ERVK-24P63145 666 aa9.04□□□□□ -0.96
CIITA-214ENST00000636238 TRIM32Q13049 653 aa9.04□□□□□ -0.96
CIITA-214ENST00000636238 MAP2K5Q13163 448 aa9.04□□□□□ -0.96
CIITA-214ENST00000636238 PICALMQ13492 652 aa9.04□□□□□ -0.96
CIITA-214ENST00000636238 RASGRF1Q13972 1273 aa9.04□□□□□ -0.96
CIITA-214ENST00000636238 C1orf53Q5VUE5 145 aa9.04□□□□□ -0.96
CIITA-214ENST00000636238 TMED8Q6PL24 325 aaPredicted RBP9.04□□□□□ -0.96
CIITA-214ENST00000636238 LBX2Q6XYB7 198 aa9.04□□□□□ -0.96
CIITA-214ENST00000636238 CENPQQ7L2Z9 268 aaPredicted RBP9.04□□□□□ -0.96
CIITA-214ENST00000636238 GPR142Q7Z601 462 aa9.04□□□□□ -0.96
CIITA-214ENST00000636238 CERS3Q8IU89 383 aa9.04□□□□□ -0.96
CIITA-214ENST00000636238 MAFAQ8NHW3 353 aaPredicted RBP9.04□□□□□ -0.96
CIITA-214ENST00000636238 LPAR1Q92633 364 aa9.04□□□□□ -0.96
CIITA-214ENST00000636238 P2RX7Q99572 595 aaKnown RBP9.04□□□□□ -0.96
CIITA-214ENST00000636238 MGAMO43451 1857 aa9.03□□□□□ -0.96
CIITA-214ENST00000636238 SLC15A5A6NIM6 579 aa9.03□□□□□ -0.96
CIITA-214ENST00000636238 USP17L10C9JJH3 530 aa9.03□□□□□ -0.96
CIITA-214ENST00000636238 BAG3O95817 575 aa9.03□□□□□ -0.96
CIITA-214ENST00000636238 UBTFL1P0CB47 393 aaPredicted RBP9.03□□□□□ -0.96
CIITA-214ENST00000636238 MDM2Q00987 491 aaPredicted RBP9.03□□□□□ -0.96
CIITA-214ENST00000636238 MECOMQ03112 1051 aa9.03□□□□□ -0.96
CIITA-214ENST00000636238 ARRDC4Q8NCT1 418 aa9.03□□□□□ -0.96
CIITA-214ENST00000636238 C12orf42Q96LP6 360 aa9.03□□□□□ -0.96
CIITA-214ENST00000636238 CDX2Q99626 313 aaPredicted RBP9.03□□□□□ -0.96
CIITA-214ENST00000636238 NOL10Q9BSC4 688 aaKnown RBP9.03□□□□□ -0.96
CIITA-214ENST00000636238 SEMA6BQ9H3T3 888 aa9.03□□□□□ -0.96
CIITA-214ENST00000636238 CHMP4BQ9H444 224 aaKnown RBP9.03□□□□□ -0.96
CIITA-214ENST00000636238 RWDD1Q9H446 243 aaPredicted RBP9.03□□□□□ -0.96
CIITA-214ENST00000636238 RBPJLQ9UBG7 517 aa9.03□□□□□ -0.96
CIITA-214ENST00000636238 ABCF2Q9UG63 623 aa9.03□□□□□ -0.96
CIITA-214ENST00000636238 DDX20Q9UHI6 824 aaKnown RBP9.03□□□□□ -0.96
CIITA-214ENST00000636238 DOCK1Q14185 1865 aa9.02□□□□□ -0.96
CIITA-214ENST00000636238 LOC285556D6RIA3 1793 aa9.02□□□□□ -0.97
CIITA-214ENST00000636238 SPTBN5Q9NRC6 3674 aaKnown RBP9.02□□□□□ -0.97
CIITA-214ENST00000636238 USP14P54578 494 aa9.02□□□□□ -0.97
CIITA-214ENST00000636238 PPP4CP60510 307 aa9.02□□□□□ -0.97
CIITA-214ENST00000636238 MTMR2Q13614 643 aa9.02□□□□□ -0.97
CIITA-214ENST00000636238 SNX17Q15036 470 aa9.02□□□□□ -0.97
CIITA-214ENST00000636238 USP17L2Q6R6M4 530 aa9.02□□□□□ -0.97
CIITA-214ENST00000636238 NSUN4Q96CB9 384 aaKnown RBP9.02□□□□□ -0.97
CIITA-214ENST00000636238 EDC3Q96F86 508 aaKnown RBP9.02□□□□□ -0.97
CIITA-214ENST00000636238 CWC22Q9HCG8 908 aaKnown RBP9.02□□□□□ -0.97
CIITA-214ENST00000636238 TXNRD2Q9NNW7 524 aa9.02□□□□□ -0.97
CIITA-214ENST00000636238 DOCK2Q92608 1830 aa9.02□□□□□ -0.97
CIITA-214ENST00000636238 USP17L15C9J2P7 530 aa9.01□□□□□ -0.97
CIITA-214ENST00000636238 USP17L13C9JLJ4 530 aa9.01□□□□□ -0.97
CIITA-214ENST00000636238 USP17L11C9JVI0 530 aa9.01□□□□□ -0.97
CIITA-214ENST00000636238 USP17L18D6R9N7 530 aa9.01□□□□□ -0.97
CIITA-214ENST00000636238 USP17L22D6RA61 530 aa9.01□□□□□ -0.97
CIITA-214ENST00000636238 USP17L17D6RBQ6 530 aa9.01□□□□□ -0.97
CIITA-214ENST00000636238 USP17L19D6RCP7 530 aa9.01□□□□□ -0.97
CIITA-214ENST00000636238 USP17L20D6RJB6 530 aa9.01□□□□□ -0.97
CIITA-214ENST00000636238 STRNO43815 780 aa9.01□□□□□ -0.97
CIITA-214ENST00000636238 IGHA2P01877 340 aa9.01□□□□□ -0.97
CIITA-214ENST00000636238 UQCRFS1P1P0C7P4 283 aa9.01□□□□□ -0.97
CIITA-214ENST00000636238 CCND3P30281 292 aaPredicted RBP9.01□□□□□ -0.97
CIITA-214ENST00000636238 USP17L24Q0WX57 530 aa9.01□□□□□ -0.97
CIITA-214ENST00000636238 MTX1Q13505 466 aa9.01□□□□□ -0.97
CIITA-214ENST00000636238 DDX60LQ5H9U9 1706 aaKnown RBP9.01□□□□□ -0.97
CIITA-214ENST00000636238 TJAP1Q5JTD0 557 aa9.01□□□□□ -0.97
CIITA-214ENST00000636238 OLFML2BQ68BL8 750 aa9.01□□□□□ -0.97
CIITA-214ENST00000636238 CCDC84Q86UT8 332 aaPredicted RBP9.01□□□□□ -0.97
CIITA-214ENST00000636238 SIRT2Q8IXJ6 389 aa9.01□□□□□ -0.97
CIITA-214ENST00000636238 TEX11Q8IYF3 940 aa9.01□□□□□ -0.97
CIITA-214ENST00000636238 SENP6Q9GZR1 1112 aaPredicted RBP9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms