RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 GABPAQ06546 454 aa24.8■■□□□ 1.56
CLN3-240ENST00000631023 CERKLQ49MI3 558 aaPredicted RBP24.8■■□□□ 1.56
CLN3-240ENST00000631023 CCDC136Q96JN2 1154 aa24.8■■□□□ 1.56
CLN3-240ENST00000631023 CFHR5Q9BXR6 569 aa24.8■■□□□ 1.56
CLN3-240ENST00000631023 AS3MTQ9HBK9 375 aa24.8■■□□□ 1.56
CLN3-240ENST00000631023 SWAP70Q9UH65 585 aa24.8■■□□□ 1.56
CLN3-240ENST00000631023 TBC1D8O95759 1140 aa24.79■■□□□ 1.56
CLN3-240ENST00000631023 CYP2D6P10635 497 aa24.79■■□□□ 1.56
CLN3-240ENST00000631023 CTR9Q6PD62 1173 aa24.79■■□□□ 1.56
CLN3-240ENST00000631023 HIP1O00291 1037 aa24.78■■□□□ 1.56
CLN3-240ENST00000631023 GDF11O95390 407 aa24.78■■□□□ 1.56
CLN3-240ENST00000631023 SDSP20132 328 aa24.78■■□□□ 1.56
CLN3-240ENST00000631023 MCMDC2Q4G0Z9 681 aa24.78■■□□□ 1.56
CLN3-240ENST00000631023 SBK1Q52WX2 424 aa24.78■■□□□ 1.56
CLN3-240ENST00000631023 TTC22Q5TAA0 569 aa24.78■■□□□ 1.56
CLN3-240ENST00000631023 FASTKD5Q7L8L6 764 aaKnown RBP24.78■■□□□ 1.56
CLN3-240ENST00000631023 ZNF280CQ8ND82 737 aa24.78■■□□□ 1.56
CLN3-240ENST00000631023 ZCCHC17Q9NP64 241 aaKnown RBP24.78■■□□□ 1.56
CLN3-240ENST00000631023 FRMD4AQ9P2Q2 1039 aaPredicted RBP24.78■■□□□ 1.56
CLN3-240ENST00000631023 ZBTB21Q9ULJ3 1066 aa24.78■■□□□ 1.56
CLN3-240ENST00000631023 TRIM75PA6NK02 468 aa24.77■■□□□ 1.56
CLN3-240ENST00000631023 SHMT1P34896 483 aa24.77■■□□□ 1.56
CLN3-240ENST00000631023 TDO2P48775 406 aa24.77■■□□□ 1.56
CLN3-240ENST00000631023 CABP5Q9NP86 173 aa24.77■■□□□ 1.56
CLN3-240ENST00000631023 A0A0G2JLL6 359 aaPredicted RBP24.76■■□□□ 1.55
CLN3-240ENST00000631023 ABCB5Q2M3G0 1257 aa24.76■■□□□ 1.55
CLN3-240ENST00000631023 PRRT2Q7Z6L0 340 aaPredicted RBP24.76■■□□□ 1.55
CLN3-240ENST00000631023 CCDC84Q86UT8 332 aaPredicted RBP24.76■■□□□ 1.55
CLN3-240ENST00000631023 CYP2D7A0A087X1C5 515 aa24.76■■□□□ 1.55
CLN3-240ENST00000631023 BTBD19C9JJ37 291 aa24.76■■□□□ 1.55
CLN3-240ENST00000631023 GH2P01242 217 aa24.76■■□□□ 1.55
CLN3-240ENST00000631023 SPP2Q13103 211 aa24.76■■□□□ 1.55
CLN3-240ENST00000631023 NOM1Q5C9Z4 860 aaKnown RBP24.76■■□□□ 1.55
CLN3-240ENST00000631023 IFNL3Q8IZI9 196 aa24.76■■□□□ 1.55
CLN3-240ENST00000631023 FAM43AQ8N2R8 423 aa24.76■■□□□ 1.55
CLN3-240ENST00000631023 DYNLL2Q96FJ2 89 aa24.76■■□□□ 1.55
CLN3-240ENST00000631023 FAM227BQ96M60 508 aa24.76■■□□□ 1.55
CLN3-240ENST00000631023 WDR18Q9BV38 432 aa24.76■■□□□ 1.55
CLN3-240ENST00000631023 DIAPH3Q9NSV4 1193 aa24.76■■□□□ 1.55
CLN3-240ENST00000631023 MINDY4BA8MYZ0 360 aa24.75■■□□□ 1.55
CLN3-240ENST00000631023 EVX2Q03828 476 aa24.75■■□□□ 1.55
CLN3-240ENST00000631023 NMIQ13287 307 aaPredicted RBP24.75■■□□□ 1.55
CLN3-240ENST00000631023 TAF1CQ15572 869 aaPredicted RBP24.75■■□□□ 1.55
CLN3-240ENST00000631023 CCDC129Q6ZRS4 1044 aa24.75■■□□□ 1.55
CLN3-240ENST00000631023 ANKRD23Q86SG2 305 aa24.75■■□□□ 1.55
CLN3-240ENST00000631023 NAPBQ9H115 298 aa24.75■■□□□ 1.55
CLN3-240ENST00000631023 A0A0D9SFI3 127 aa24.74■■□□□ 1.55
CLN3-240ENST00000631023 MFAP1P55081 439 aaKnown RBP24.74■■□□□ 1.55
CLN3-240ENST00000631023 JAG1P78504 1218 aa24.74■■□□□ 1.55
CLN3-240ENST00000631023 C16orf86Q6ZW13 317 aa24.74■■□□□ 1.55
CLN3-240ENST00000631023 ZFYVE28Q9HCC9 887 aa24.74■■□□□ 1.55
CLN3-240ENST00000631023 EPB41L4AQ9HCS5 686 aaPredicted RBP24.74■■□□□ 1.55
CLN3-240ENST00000631023 CDK8P49336 464 aa24.73■■□□□ 1.55
CLN3-240ENST00000631023 GADL1Q6ZQY3 521 aa24.73■■□□□ 1.55
CLN3-240ENST00000631023 SLC44A5Q8NCS7 719 aa24.73■■□□□ 1.55
CLN3-240ENST00000631023 CCDC17Q96LX7 622 aa24.73■■□□□ 1.55
CLN3-240ENST00000631023 CRHR2Q13324 411 aa24.72■■□□□ 1.55
CLN3-240ENST00000631023 RAB3GAP1Q15042 981 aa24.72■■□□□ 1.55
CLN3-240ENST00000631023 COL13A1Q5TAT6 717 aaPredicted RBP24.72■■□□□ 1.55
CLN3-240ENST00000631023 ERICH6BQ5W0A0 696 aa24.72■■□□□ 1.55
CLN3-240ENST00000631023 ZNF287Q9HBT7 754 aa24.72■■□□□ 1.55
CLN3-240ENST00000631023 GPR25O00155 361 aa24.71■■□□□ 1.55
CLN3-240ENST00000631023 MPHOSPH10O00566 681 aaKnown RBP24.71■■□□□ 1.55
CLN3-240ENST00000631023 GSPT1P15170 499 aaKnown RBP24.71■■□□□ 1.55
CLN3-240ENST00000631023 MOGSQ13724 837 aa24.71■■□□□ 1.55
CLN3-240ENST00000631023 SHROOM1Q2M3G4 852 aaPredicted RBP24.71■■□□□ 1.55
CLN3-240ENST00000631023 C19orf81C9J6K1 198 aa24.71■■□□□ 1.55
CLN3-240ENST00000631023 USP17L10C9JJH3 530 aa24.71■■□□□ 1.55
CLN3-240ENST00000631023 PDHXO00330 501 aa24.71■■□□□ 1.55
CLN3-240ENST00000631023 BACE1P56817 501 aa24.71■■□□□ 1.55
CLN3-240ENST00000631023 CWC27Q6UX04 472 aaKnown RBP24.71■■□□□ 1.55
CLN3-240ENST00000631023 PROCA1Q8NCQ7 364 aaPredicted RBP24.71■■□□□ 1.55
CLN3-240ENST00000631023 R3HDMLQ9H3Y0 253 aa24.71■■□□□ 1.55
CLN3-240ENST00000631023 CCDC171Q6TFL3 1326 aa24.7■■□□□ 1.54
CLN3-240ENST00000631023 SLC3A2P08195 630 aaKnown RBP24.7■■□□□ 1.54
CLN3-240ENST00000631023 GPAT2Q6NUI2 795 aa24.7■■□□□ 1.54
CLN3-240ENST00000631023 TMEM179Q6ZVK1 233 aa24.7■■□□□ 1.54
CLN3-240ENST00000631023 MKNK2Q9HBH9 465 aa24.7■■□□□ 1.54
CLN3-240ENST00000631023 TMOD4Q9NZQ9 345 aa24.7■■□□□ 1.54
CLN3-240ENST00000631023 SLC45A1Q9Y2W3 748 aa24.7■■□□□ 1.54
CLN3-240ENST00000631023 LOC285556D6RIA3 1793 aa24.7■■□□□ 1.54
CLN3-240ENST00000631023 SMIM22K7EJ46 135 aa24.69■■□□□ 1.54
CLN3-240ENST00000631023 HMGCS2P54868 508 aa24.69■■□□□ 1.54
CLN3-240ENST00000631023 MTMR2Q13614 643 aa24.69■■□□□ 1.54
CLN3-240ENST00000631023 SH3D19Q5HYK7 790 aa24.69■■□□□ 1.54
CLN3-240ENST00000631023 ZNF296Q8WUU4 475 aaPredicted RBP24.69■■□□□ 1.54
CLN3-240ENST00000631023 ROBO3Q96MS0 1386 aa24.69■■□□□ 1.54
CLN3-240ENST00000631023 FKTNO75072 461 aa24.68■■□□□ 1.54
CLN3-240ENST00000631023 ALX1Q15699 326 aa24.68■■□□□ 1.54
CLN3-240ENST00000631023 VPS53Q5VIR6 699 aa24.68■■□□□ 1.54
CLN3-240ENST00000631023 AGTPBP1Q9UPW5 1226 aa24.68■■□□□ 1.54
CLN3-240ENST00000631023 SEPT2Q15019 361 aa24.67■■□□□ 1.54
CLN3-240ENST00000631023 ZNF589Q86UQ0 364 aaPredicted RBP24.67■■□□□ 1.54
CLN3-240ENST00000631023 PARK7Q99497 189 aaKnown RBP24.67■■□□□ 1.54
CLN3-240ENST00000631023 FEZ1Q99689 392 aa24.67■■□□□ 1.54
CLN3-240ENST00000631023 FOXP2O15409 715 aa24.67■■□□□ 1.54
CLN3-240ENST00000631023 TLR2O60603 784 aa24.67■■□□□ 1.54
CLN3-240ENST00000631023 HSPD1P10809 573 aaKnown RBP24.67■■□□□ 1.54
CLN3-240ENST00000631023 PDE4BQ07343 736 aa24.67■■□□□ 1.54
CLN3-240ENST00000631023 PPARAQ07869 468 aa24.67■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms