RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 HAUS7Q99871 368 aa12.71□□□□□ -0.37
CLIP1-219ENST00000620786 BCAMP50895 628 aa12.71□□□□□ -0.37
CLIP1-219ENST00000620786 SMC5Q8IY18 1101 aa12.71□□□□□ -0.37
CLIP1-219ENST00000620786 RNF169Q8NCN4 708 aa12.71□□□□□ -0.37
CLIP1-219ENST00000620786 PPP1R9BQ96SB3 815 aa12.71□□□□□ -0.37
CLIP1-219ENST00000620786 LLPHQ9BRT6 129 aaKnown RBP12.71□□□□□ -0.37
CLIP1-219ENST00000620786 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.71□□□□□ -0.37
CLIP1-219ENST00000620786 hCG_1642624A0A1W2PR95 340 aa12.71□□□□□ -0.37
CLIP1-219ENST00000620786 SH3BP5O60239 455 aa12.71□□□□□ -0.37
CLIP1-219ENST00000620786 CBX1P83916 185 aa12.71□□□□□ -0.37
CLIP1-219ENST00000620786 CHRNDQ07001 517 aa12.71□□□□□ -0.37
CLIP1-219ENST00000620786 ASIC2Q16515 512 aa12.71□□□□□ -0.37
CLIP1-219ENST00000620786 VWA3BQ502W6 1294 aa12.71□□□□□ -0.37
CLIP1-219ENST00000620786 MRPL44Q9H9J2 332 aaKnown RBP12.71□□□□□ -0.37
CLIP1-219ENST00000620786 SPOPO43791 374 aa12.71□□□□□ -0.38
CLIP1-219ENST00000620786 RAD51AP2Q09MP3 1159 aa12.71□□□□□ -0.38
CLIP1-219ENST00000620786 CCDC25Q86WR0 208 aa12.71□□□□□ -0.38
CLIP1-219ENST00000620786 TPH2Q8IWU9 490 aa12.71□□□□□ -0.38
CLIP1-219ENST00000620786 INTS4Q96HW7 963 aaKnown RBP12.71□□□□□ -0.38
CLIP1-219ENST00000620786 NSRP1Q9H0G5 558 aaKnown RBP12.71□□□□□ -0.38
CLIP1-219ENST00000620786 CETN3O15182 167 aa12.7□□□□□ -0.38
CLIP1-219ENST00000620786 GAS7O60861 476 aa12.7□□□□□ -0.38
CLIP1-219ENST00000620786 LZTFL1Q9NQ48 299 aa12.7□□□□□ -0.38
CLIP1-219ENST00000620786 KCNH3Q9ULD8 1083 aa12.7□□□□□ -0.38
CLIP1-219ENST00000620786 MAPK8IP1Q9UQF2 711 aa12.7□□□□□ -0.38
CLIP1-219ENST00000620786 MAP3K15Q6ZN16 1313 aa12.7□□□□□ -0.38
CLIP1-219ENST00000620786 KIAA0232Q92628 1395 aa12.7□□□□□ -0.38
CLIP1-219ENST00000620786 PPP2R5BQ15173 497 aa12.7□□□□□ -0.38
CLIP1-219ENST00000620786 FAM182BQ5T319 152 aa12.7□□□□□ -0.38
CLIP1-219ENST00000620786 FAM204AQ9H8W3 233 aa12.7□□□□□ -0.38
CLIP1-219ENST00000620786 GABPAQ06546 454 aa12.7□□□□□ -0.38
CLIP1-219ENST00000620786 CABP7Q86V35 215 aa12.7□□□□□ -0.38
CLIP1-219ENST00000620786 TSPOAP1O95153 1857 aa12.7□□□□□ -0.38
CLIP1-219ENST00000620786 GIGYF1O75420 1035 aaPredicted RBP12.7□□□□□ -0.38
CLIP1-219ENST00000620786 HERC4Q5GLZ8 1057 aaPredicted RBP12.7□□□□□ -0.38
CLIP1-219ENST00000620786 REXO1Q8N1G1 1221 aaKnown RBP12.7□□□□□ -0.38
CLIP1-219ENST00000620786 ANKRD35Q8N283 1001 aa12.7□□□□□ -0.38
CLIP1-219ENST00000620786 SELENOSQ9BQE4 189 aa12.7□□□□□ -0.38
CLIP1-219ENST00000620786 EFCAB6Q5THR3 1501 aa12.7□□□□□ -0.38
CLIP1-219ENST00000620786 SMIM23A6NLE4 172 aa12.7□□□□□ -0.38
CLIP1-219ENST00000620786 FAM102BQ5T8I3 360 aa12.7□□□□□ -0.38
CLIP1-219ENST00000620786 DEPTORQ8TB45 409 aa12.7□□□□□ -0.38
CLIP1-219ENST00000620786 ANO3Q9BYT9 981 aa12.7□□□□□ -0.38
CLIP1-219ENST00000620786 KCNJ14Q9UNX9 436 aa12.7□□□□□ -0.38
CLIP1-219ENST00000620786 SMCO2A6NFE2 343 aa12.69□□□□□ -0.38
CLIP1-219ENST00000620786 USP17L12C9JPN9 530 aa12.69□□□□□ -0.38
CLIP1-219ENST00000620786 USP17L21D6R901 530 aa12.69□□□□□ -0.38
CLIP1-219ENST00000620786 FAM160A1Q05DH4 1040 aa12.69□□□□□ -0.38
CLIP1-219ENST00000620786 ZNF569Q5MCW4 686 aa12.69□□□□□ -0.38
CLIP1-219ENST00000620786 LRRC47Q8N1G4 583 aaKnown RBP12.69□□□□□ -0.38
CLIP1-219ENST00000620786 CFAP65Q6ZU64 1925 aaKnown RBP12.69□□□□□ -0.38
CLIP1-219ENST00000620786 UGGT1Q9NYU2 1555 aa12.69□□□□□ -0.38
CLIP1-219ENST00000620786 PALM3A6NDB9 673 aaPredicted RBP12.69□□□□□ -0.38
CLIP1-219ENST00000620786 POLR2DO15514 142 aaKnown RBP12.69□□□□□ -0.38
CLIP1-219ENST00000620786 EXOC3O60645 756 aa12.69□□□□□ -0.38
CLIP1-219ENST00000620786 POLR2MP0CAP2 368 aa12.69□□□□□ -0.38
CLIP1-219ENST00000620786 MYL5Q02045 173 aa12.69□□□□□ -0.38
CLIP1-219ENST00000620786 BIRC2Q13490 618 aa12.69□□□□□ -0.38
CLIP1-219ENST00000620786 PPP1R21Q6ZMI0 780 aa12.69□□□□□ -0.38
CLIP1-219ENST00000620786 MRPL11Q9Y3B7 192 aaKnown RBP12.69□□□□□ -0.38
CLIP1-219ENST00000620786 KDM5AP29375 1690 aaKnown RBP12.69□□□□□ -0.38
CLIP1-219ENST00000620786 NR1I2O75469 434 aa12.69□□□□□ -0.38
CLIP1-219ENST00000620786 TBC1D8BQ0IIM8 1120 aa12.69□□□□□ -0.38
CLIP1-219ENST00000620786 VPS16Q9H269 839 aa12.69□□□□□ -0.38
CLIP1-219ENST00000620786 ZBTB24O43167 697 aaPredicted RBP12.69□□□□□ -0.38
CLIP1-219ENST00000620786 SLU7O95391 586 aaKnown RBP12.69□□□□□ -0.38
CLIP1-219ENST00000620786 PCCAP05165 728 aaPredicted RBP12.69□□□□□ -0.38
CLIP1-219ENST00000620786 CNGA4Q8IV77 575 aa12.69□□□□□ -0.38
CLIP1-219ENST00000620786 CSGALNACT2Q8N6G5 542 aa12.69□□□□□ -0.38
CLIP1-219ENST00000620786 CARD10Q9BWT7 1032 aa12.69□□□□□ -0.38
CLIP1-219ENST00000620786 PLEKHG1Q9ULL1 1385 aa12.69□□□□□ -0.38
CLIP1-219ENST00000620786 CUTAO60888 179 aa12.69□□□□□ -0.38
CLIP1-219ENST00000620786 STK10O94804 968 aaKnown RBP12.69□□□□□ -0.38
CLIP1-219ENST00000620786 ARHGEF6Q15052 776 aa12.69□□□□□ -0.38
CLIP1-219ENST00000620786 NELFCDQ8IXH7 590 aa12.69□□□□□ -0.38
CLIP1-219ENST00000620786 VPS54Q9P1Q0 977 aa12.69□□□□□ -0.38
CLIP1-219ENST00000620786 ATF5Q9Y2D1 282 aaPredicted RBP12.69□□□□□ -0.38
CLIP1-219ENST00000620786 ZNF804BA4D1E1 1349 aa12.69□□□□□ -0.38
CLIP1-219ENST00000620786 MYO5CQ9NQX4 1742 aa12.68□□□□□ -0.38
CLIP1-219ENST00000620786 CLRN2A0PK11 232 aa12.68□□□□□ -0.38
CLIP1-219ENST00000620786 FLOT1O75955 427 aa12.68□□□□□ -0.38
CLIP1-219ENST00000620786 ICA1Q05084 483 aa12.68□□□□□ -0.38
CLIP1-219ENST00000620786 ZSCAN10Q96SZ4 725 aaPredicted RBP12.68□□□□□ -0.38
CLIP1-219ENST00000620786 MTRF1LQ9UGC7 380 aaKnown RBP12.68□□□□□ -0.38
CLIP1-219ENST00000620786 SYNRGQ9UMZ2 1314 aa12.68□□□□□ -0.38
CLIP1-219ENST00000620786 ADGRL2O95490 1459 aa12.68□□□□□ -0.38
CLIP1-219ENST00000620786 NLRP1Q9C000 1473 aa12.68□□□□□ -0.38
CLIP1-219ENST00000620786 SERPINB2P05120 415 aa12.68□□□□□ -0.38
CLIP1-219ENST00000620786 C8orf34Q49A92 452 aa12.68□□□□□ -0.38
CLIP1-219ENST00000620786 UTP14CQ5TAP6 766 aaKnown RBP12.68□□□□□ -0.38
CLIP1-219ENST00000620786 MCF2L2Q86YR7 1114 aa12.68□□□□□ -0.38
CLIP1-219ENST00000620786 NBPF3Q9H094 633 aa12.68□□□□□ -0.38
CLIP1-219ENST00000620786 XDHP47989 1333 aa12.68□□□□□ -0.38
CLIP1-219ENST00000620786 ATP2C2O75185 946 aa12.68□□□□□ -0.38
CLIP1-219ENST00000620786 INF2Q27J81 1249 aa12.68□□□□□ -0.38
CLIP1-219ENST00000620786 IFT81Q8WYA0 676 aa12.68□□□□□ -0.38
CLIP1-219ENST00000620786 MED10Q9BTT4 135 aa12.68□□□□□ -0.38
CLIP1-219ENST00000620786 ATP8A2Q9NTI2 1148 aa12.68□□□□□ -0.38
CLIP1-219ENST00000620786 AKR1B15C9JRZ8 316 aaPredicted RBP12.68□□□□□ -0.38
CLIP1-219ENST00000620786 E7EWF7 191 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms