RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 GINM1Q9NU53 330 aa30.49■■■□□ 2.47
PTPRF-216ENST00000617451 TLR7Q9NYK1 1049 aaKnown RBP30.49■■■□□ 2.47
PTPRF-216ENST00000617451 TMOD4Q9NZQ9 345 aa30.49■■■□□ 2.47
PTPRF-216ENST00000617451 RBM27Q9P2N5 1060 aaKnown RBP30.49■■■□□ 2.47
PTPRF-216ENST00000617451 MYO5AQ9Y4I1 1855 aaKnown RBP30.48■■■□□ 2.47
PTPRF-216ENST00000617451 RLBP1P12271 317 aa30.48■■■□□ 2.47
PTPRF-216ENST00000617451 SHROOM1Q2M3G4 852 aaPredicted RBP30.48■■■□□ 2.47
PTPRF-216ENST00000617451 EAF2Q96CJ1 260 aaPredicted RBP30.48■■■□□ 2.47
PTPRF-216ENST00000617451 TRIM34Q9BYJ4 488 aa30.48■■■□□ 2.47
PTPRF-216ENST00000617451 CCDC8Q9H0W5 538 aaPredicted RBP30.48■■■□□ 2.47
PTPRF-216ENST00000617451 FOCADQ5VW36 1801 aa30.47■■■□□ 2.47
PTPRF-216ENST00000617451 C19orf81C9J6K1 198 aa30.47■■■□□ 2.47
PTPRF-216ENST00000617451 DYNLL1P63167 89 aaKnown RBP30.47■■■□□ 2.47
PTPRF-216ENST00000617451 IRX3P78415 501 aaPredicted RBP30.47■■■□□ 2.47
PTPRF-216ENST00000617451 P2RX7Q99572 595 aaKnown RBP30.47■■■□□ 2.47
PTPRF-216ENST00000617451 SAP30BPQ9UHR5 308 aaKnown RBP30.47■■■□□ 2.47
PTPRF-216ENST00000617451 GDF11O95390 407 aa30.46■■■□□ 2.47
PTPRF-216ENST00000617451 HMGCRP04035 888 aa30.46■■■□□ 2.47
PTPRF-216ENST00000617451 CYP7A1P22680 504 aa30.46■■■□□ 2.47
PTPRF-216ENST00000617451 XRN2Q9H0D6 950 aaKnown RBP eCLIP30.46■■■□□ 2.476e-6■■■□□ 16.8
PTPRF-216ENST00000617451 PRO3102Q9H379 93 aa30.46■■■□□ 2.47
PTPRF-216ENST00000617451 ZBTB21Q9ULJ3 1066 aa30.46■■■□□ 2.47
PTPRF-216ENST00000617451 USP17L10C9JJH3 530 aa30.45■■■□□ 2.47
PTPRF-216ENST00000617451 HLA-DOAP06340 250 aa30.45■■■□□ 2.47
PTPRF-216ENST00000617451 HNRNPUQ00839 825 aaKnown RBP eCLIP30.45■■■□□ 2.47
PTPRF-216ENST00000617451 IDH1O75874 414 aaKnown RBP30.43■■■□□ 2.46
PTPRF-216ENST00000617451 HERVK_113P62684 666 aa30.43■■■□□ 2.46
PTPRF-216ENST00000617451 PAWRQ96IZ0 340 aaKnown RBP30.43■■■□□ 2.46
PTPRF-216ENST00000617451 EVI5O60447 810 aa30.42■■■□□ 2.46
PTPRF-216ENST00000617451 CEP85Q6P2H3 762 aa30.42■■■□□ 2.46
PTPRF-216ENST00000617451 CERS3Q8IU89 383 aa30.42■■■□□ 2.46
PTPRF-216ENST00000617451 GPRC5AQ8NFJ5 357 aa30.42■■■□□ 2.46
PTPRF-216ENST00000617451 TXNRD2Q9NNW7 524 aa30.42■■■□□ 2.46
PTPRF-216ENST00000617451 RPTORQ8N122 1335 aa30.42■■■□□ 2.46
PTPRF-216ENST00000617451 PEX10O60683 326 aa30.41■■■□□ 2.46
PTPRF-216ENST00000617451 TRIM32Q13049 653 aa30.41■■■□□ 2.46
PTPRF-216ENST00000617451 MIGA1Q8NAN2 632 aa30.41■■■□□ 2.46
PTPRF-216ENST00000617451 MAGEB6Q8N7X4 407 aa30.4■■■□□ 2.46
PTPRF-216ENST00000617451 ANKLE1Q8NAG6 615 aa30.4■■■□□ 2.46
PTPRF-216ENST00000617451 HMX1Q9NP08 348 aaPredicted RBP30.4■■■□□ 2.46
PTPRF-216ENST00000617451 EMILIN3Q9NT22 766 aa30.4■■■□□ 2.46
PTPRF-216ENST00000617451 RBPJLQ9UBG7 517 aa30.4■■■□□ 2.46
PTPRF-216ENST00000617451 NDUFB9Q9Y6M9 179 aa30.4■■■□□ 2.46
PTPRF-216ENST00000617451 PLXNB2O15031 1838 aa30.39■■■□□ 2.46
PTPRF-216ENST00000617451 TATDN1Q6P1N9 297 aa30.39■■■□□ 2.46
PTPRF-216ENST00000617451 NECAB2Q7Z6G3 386 aa30.39■■■□□ 2.46
PTPRF-216ENST00000617451 DIS3LQ8TF46 1054 aaKnown RBP30.39■■■□□ 2.46
PTPRF-216ENST00000617451 TRIB2Q92519 343 aa30.39■■■□□ 2.46
PTPRF-216ENST00000617451 ANTXR1Q9H6X2 564 aa30.39■■■□□ 2.46
PTPRF-216ENST00000617451 GH2P01242 217 aa30.38■■■□□ 2.45
PTPRF-216ENST00000617451 USP5P45974 858 aa30.38■■■□□ 2.45
PTPRF-216ENST00000617451 TMED8Q6PL24 325 aaPredicted RBP30.38■■■□□ 2.45
PTPRF-216ENST00000617451 USP17L2Q6R6M4 530 aa30.38■■■□□ 2.45
PTPRF-216ENST00000617451 NUDT12Q9BQG2 462 aa30.38■■■□□ 2.45
PTPRF-216ENST00000617451 XRCC5P13010 732 aaKnown RBP30.37■■■□□ 2.45
PTPRF-216ENST00000617451 CYP2B6P20813 491 aa30.37■■■□□ 2.45
PTPRF-216ENST00000617451 MAP3K12Q12852 859 aa30.37■■■□□ 2.45
PTPRF-216ENST00000617451 ERC1Q8IUD2 1116 aa30.37■■■□□ 2.45
PTPRF-216ENST00000617451 SOCS4Q8WXH5 440 aa30.37■■■□□ 2.45
PTPRF-216ENST00000617451 EHD4Q9H223 541 aa30.37■■■□□ 2.45
PTPRF-216ENST00000617451 EXOC6BQ9Y2D4 811 aa30.37■■■□□ 2.45
PTPRF-216ENST00000617451 LAMA3Q16787 3333 aa30.37■■■□□ 2.45
PTPRF-216ENST00000617451 MAPK4P31152 587 aa30.36■■■□□ 2.45
PTPRF-216ENST00000617451 ERVK-9P63128 1117 aa30.36■■■□□ 2.45
PTPRF-216ENST00000617451 ERVK-24P63145 666 aa30.36■■■□□ 2.45
PTPRF-216ENST00000617451 Q3C1V9 767 aa30.36■■■□□ 2.45
PTPRF-216ENST00000617451 MAP3K21Q5TCX8 1036 aa30.36■■■□□ 2.45
PTPRF-216ENST00000617451 POTEEQ6S8J3 1075 aa30.36■■■□□ 2.45
PTPRF-216ENST00000617451 AACSQ86V21 672 aa30.36■■■□□ 2.45
PTPRF-216ENST00000617451 GTF3C2Q8WUA4 911 aaPredicted RBP30.36■■■□□ 2.45
PTPRF-216ENST00000617451 SERPINB13Q9UIV8 391 aa30.36■■■□□ 2.45
PTPRF-216ENST00000617451 MYH1P12882 1939 aa30.35■■■□□ 2.45
PTPRF-216ENST00000617451 MNX1P50219 401 aaPredicted RBP30.34■■■□□ 2.45
PTPRF-216ENST00000617451 USP6NLQ92738 828 aa30.34■■■□□ 2.45
PTPRF-216ENST00000617451 C12orf42Q96LP6 360 aa30.34■■■□□ 2.45
PTPRF-216ENST00000617451 PORCNQ9H237 461 aa30.34■■■□□ 2.45
PTPRF-216ENST00000617451 TTC6Q86TZ1 520 aa30.33■■■□□ 2.45
PTPRF-216ENST00000617451 MIER1Q8N108 512 aa30.33■■■□□ 2.45
PTPRF-216ENST00000617451 PANK1Q8TE04 598 aa30.33■■■□□ 2.45
PTPRF-216ENST00000617451 OGDHLQ9ULD0 1010 aa30.33■■■□□ 2.45
PTPRF-216ENST00000617451 A0A1W2PPC1 479 aa30.32■■■□□ 2.44
PTPRF-216ENST00000617451 PRKAR2AP13861 404 aaKnown RBP30.32■■■□□ 2.44
PTPRF-216ENST00000617451 PDE3AQ14432 1141 aa30.32■■■□□ 2.44
PTPRF-216ENST00000617451 TRMT44Q8IYL2 757 aaKnown RBP30.32■■■□□ 2.44
PTPRF-216ENST00000617451 RIOK1Q9BRS2 568 aaKnown RBP30.32■■■□□ 2.44
PTPRF-216ENST00000617451 PAGR1Q9BTK6 254 aa30.32■■■□□ 2.44
PTPRF-216ENST00000617451 NBPF3Q9H094 633 aa30.32■■■□□ 2.44
PTPRF-216ENST00000617451 ALPK3Q96L96 1907 aa30.32■■■□□ 2.44
PTPRF-216ENST00000617451 CERKLQ49MI3 558 aaPredicted RBP30.31■■■□□ 2.44
PTPRF-216ENST00000617451 GPR142Q7Z601 462 aa30.31■■■□□ 2.44
PTPRF-216ENST00000617451 CCAR1Q8IX12 1150 aaKnown RBP30.31■■■□□ 2.44
PTPRF-216ENST00000617451 FEZ1Q99689 392 aa30.31■■■□□ 2.44
PTPRF-216ENST00000617451 USP17L15C9J2P7 530 aa30.3■■■□□ 2.44
PTPRF-216ENST00000617451 USP17L13C9JLJ4 530 aa30.3■■■□□ 2.44
PTPRF-216ENST00000617451 USP17L11C9JVI0 530 aa30.3■■■□□ 2.44
PTPRF-216ENST00000617451 USP17L18D6R9N7 530 aa30.3■■■□□ 2.44
PTPRF-216ENST00000617451 USP17L22D6RA61 530 aa30.3■■■□□ 2.44
PTPRF-216ENST00000617451 USP17L17D6RBQ6 530 aa30.3■■■□□ 2.44
PTPRF-216ENST00000617451 USP17L19D6RCP7 530 aa30.3■■■□□ 2.44
PTPRF-216ENST00000617451 USP17L20D6RJB6 530 aa30.3■■■□□ 2.44
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms