RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 CRACR2BQ8N4Y2 399 aaPredicted RBP23.12■■□□□ 1.29
CDX1-202ENST00000616154 DPF3Q92784 378 aa23.12■■□□□ 1.29
CDX1-202ENST00000616154 HTATIP2Q9BUP3 242 aa23.12■■□□□ 1.29
CDX1-202ENST00000616154 TRIM34Q9BYJ4 488 aa23.12■■□□□ 1.29
CDX1-202ENST00000616154 PALD1Q9ULE6 856 aa23.12■■□□□ 1.29
CDX1-202ENST00000616154 FARP2O94887 1054 aaPredicted RBP23.11■■□□□ 1.29
CDX1-202ENST00000616154 FXR1P51114 621 aaKnown RBP eCLIP23.11■■□□□ 1.29
CDX1-202ENST00000616154 JAG1P78504 1218 aa23.11■■□□□ 1.29
CDX1-202ENST00000616154 MTMR2Q13614 643 aa23.11■■□□□ 1.29
CDX1-202ENST00000616154 PLXNB2O15031 1838 aa23.11■■□□□ 1.29
CDX1-202ENST00000616154 CYP7A1P22680 504 aa23.1■■□□□ 1.29
CDX1-202ENST00000616154 DYNLL1P63167 89 aaKnown RBP23.1■■□□□ 1.29
CDX1-202ENST00000616154 CERS3Q8IU89 383 aa23.1■■□□□ 1.29
CDX1-202ENST00000616154 RPAP2Q8IXW5 612 aaPredicted RBP23.1■■□□□ 1.29
CDX1-202ENST00000616154 CHMP4BQ9H444 224 aaKnown RBP23.1■■□□□ 1.29
CDX1-202ENST00000616154 PAK6Q9NQU5 681 aaPredicted RBP23.1■■□□□ 1.29
CDX1-202ENST00000616154 TMOD4Q9NZQ9 345 aa23.1■■□□□ 1.29
CDX1-202ENST00000616154 MORF4L1Q9UBU8 362 aa23.1■■□□□ 1.29
CDX1-202ENST00000616154 COG6Q9Y2V7 657 aa23.1■■□□□ 1.29
CDX1-202ENST00000616154 C19orf81C9J6K1 198 aa23.09■■□□□ 1.29
CDX1-202ENST00000616154 HLA-DOAP06340 250 aa23.09■■□□□ 1.29
CDX1-202ENST00000616154 HOXA7P31268 230 aaPredicted RBP23.09■■□□□ 1.29
CDX1-202ENST00000616154 SAP30BPQ9UHR5 308 aaKnown RBP23.09■■□□□ 1.29
CDX1-202ENST00000616154 TAOK2Q9UL54 1235 aa23.09■■□□□ 1.29
CDX1-202ENST00000616154 ZBTB21Q9ULJ3 1066 aa23.09■■□□□ 1.29
CDX1-202ENST00000616154 IDH1O75874 414 aaKnown RBP23.08■■□□□ 1.29
CDX1-202ENST00000616154 GDF11O95390 407 aa23.08■■□□□ 1.29
CDX1-202ENST00000616154 IRX3P78415 501 aaPredicted RBP23.08■■□□□ 1.29
CDX1-202ENST00000616154 SHROOM1Q2M3G4 852 aaPredicted RBP23.08■■□□□ 1.29
CDX1-202ENST00000616154 TMED8Q6PL24 325 aaPredicted RBP23.08■■□□□ 1.29
CDX1-202ENST00000616154 ERC1Q8IUD2 1116 aa23.08■■□□□ 1.29
CDX1-202ENST00000616154 DEFB118Q96PH6 123 aa23.08■■□□□ 1.29
CDX1-202ENST00000616154 GJD2Q9UKL4 321 aa23.08■■□□□ 1.29
CDX1-202ENST00000616154 USP17L10C9JJH3 530 aa23.08■■□□□ 1.28
CDX1-202ENST00000616154 CRISPLD2Q9H0B8 497 aa23.08■■□□□ 1.28
CDX1-202ENST00000616154 EXOC6BQ9Y2D4 811 aa23.08■■□□□ 1.28
CDX1-202ENST00000616154 HMGCRP04035 888 aa23.07■■□□□ 1.28
CDX1-202ENST00000616154 DDX60LQ5H9U9 1706 aaKnown RBP23.07■■□□□ 1.28
CDX1-202ENST00000616154 SIRT2Q8IXJ6 389 aa23.07■■□□□ 1.28
CDX1-202ENST00000616154 MAGEB6Q8N7X4 407 aa23.07■■□□□ 1.28
CDX1-202ENST00000616154 MIGA1Q8NAN2 632 aa23.07■■□□□ 1.28
CDX1-202ENST00000616154 TFRCP02786 760 aaKnown RBP23.06■■□□□ 1.28
CDX1-202ENST00000616154 MAP3K12Q12852 859 aa23.06■■□□□ 1.28
CDX1-202ENST00000616154 HSP90AB4PQ58FF6 505 aa23.06■■□□□ 1.28
CDX1-202ENST00000616154 C20orf194Q5TEA3 1177 aa23.06■■□□□ 1.28
CDX1-202ENST00000616154 CHRDL2Q6WN34 429 aa23.06■■□□□ 1.28
CDX1-202ENST00000616154 AACSQ86V21 672 aa23.06■■□□□ 1.28
CDX1-202ENST00000616154 P2RX7Q99572 595 aaKnown RBP23.06■■□□□ 1.28
CDX1-202ENST00000616154 XRN2Q9H0D6 950 aaKnown RBP eCLIP23.06■■□□□ 1.28
CDX1-202ENST00000616154 ANTXR1Q9H6X2 564 aa23.06■■□□□ 1.28
CDX1-202ENST00000616154 NR2E3Q9Y5X4 410 aa23.06■■□□□ 1.28
CDX1-202ENST00000616154 NDUFB9Q9Y6M9 179 aa23.06■■□□□ 1.28
CDX1-202ENST00000616154 RANBP2P49792 3224 aaKnown RBP23.05■■□□□ 1.28
CDX1-202ENST00000616154 ALPK3Q96L96 1907 aa23.05■■□□□ 1.28
CDX1-202ENST00000616154 CENPBP07199 599 aaPredicted RBP23.05■■□□□ 1.28
CDX1-202ENST00000616154 USP5P45974 858 aa23.05■■□□□ 1.28
CDX1-202ENST00000616154 HERVK_113P62684 666 aa23.05■■□□□ 1.28
CDX1-202ENST00000616154 TATDN1Q6P1N9 297 aa23.05■■□□□ 1.28
CDX1-202ENST00000616154 EHD4Q9H223 541 aa23.05■■□□□ 1.28
CDX1-202ENST00000616154 NAV1Q8NEY1 1877 aa23.05■■□□□ 1.28
CDX1-202ENST00000616154 GPRC5AQ8NFJ5 357 aa23.04■■□□□ 1.28
CDX1-202ENST00000616154 TXNRD2Q9NNW7 524 aa23.04■■□□□ 1.28
CDX1-202ENST00000616154 HMMRO75330 724 aa23.03■■□□□ 1.28
CDX1-202ENST00000616154 GH2P01242 217 aa23.03■■□□□ 1.28
CDX1-202ENST00000616154 USP17L2Q6R6M4 530 aa23.03■■□□□ 1.28
CDX1-202ENST00000616154 GTF3C2Q8WUA4 911 aaPredicted RBP23.03■■□□□ 1.28
CDX1-202ENST00000616154 EMILIN3Q9NT22 766 aa23.03■■□□□ 1.28
CDX1-202ENST00000616154 SERPINB13Q9UIV8 391 aa23.03■■□□□ 1.28
CDX1-202ENST00000616154 RHPN1Q8TCX5 695 aa23.02■■□□□ 1.28
CDX1-202ENST00000616154 C12orf42Q96LP6 360 aa23.02■■□□□ 1.28
CDX1-202ENST00000616154 RBPJLQ9UBG7 517 aa23.02■■□□□ 1.28
CDX1-202ENST00000616154 RPTORQ8N122 1335 aa23.01■■□□□ 1.27
CDX1-202ENST00000616154 PEX10O60683 326 aa23.01■■□□□ 1.27
CDX1-202ENST00000616154 TTC6Q86TZ1 520 aa23.01■■□□□ 1.27
CDX1-202ENST00000616154 ANKLE1Q8NAG6 615 aa23.01■■□□□ 1.27
CDX1-202ENST00000616154 SOCS4Q8WXH5 440 aa23.01■■□□□ 1.27
CDX1-202ENST00000616154 RIOK1Q9BRS2 568 aaKnown RBP23.01■■□□□ 1.27
CDX1-202ENST00000616154 PRO3102Q9H379 93 aa23.01■■□□□ 1.27
CDX1-202ENST00000616154 HMX1Q9NP08 348 aaPredicted RBP23.01■■□□□ 1.27
CDX1-202ENST00000616154 RBM27Q9P2N5 1060 aaKnown RBP23.01■■□□□ 1.27
CDX1-202ENST00000616154 MAPK4P31152 587 aa23■■□□□ 1.27
CDX1-202ENST00000616154 ERVK-9P63128 1117 aa23■■□□□ 1.27
CDX1-202ENST00000616154 ERVK-24P63145 666 aa23■■□□□ 1.27
CDX1-202ENST00000616154 TRIM32Q13049 653 aa23■■□□□ 1.27
CDX1-202ENST00000616154 TTF1Q15361 905 aaPredicted RBP23■■□□□ 1.27
CDX1-202ENST00000616154 TRIB2Q92519 343 aa23■■□□□ 1.27
CDX1-202ENST00000616154 PAWRQ96IZ0 340 aaKnown RBP23■■□□□ 1.27
CDX1-202ENST00000616154 NUDT12Q9BQG2 462 aa23■■□□□ 1.27
CDX1-202ENST00000616154 IL1RAPL2Q9NP60 686 aa23■■□□□ 1.27
CDX1-202ENST00000616154 EVI5O60447 810 aa22.99■■□□□ 1.27
CDX1-202ENST00000616154 XRCC5P13010 732 aaKnown RBP22.99■■□□□ 1.27
CDX1-202ENST00000616154 KIF1BPQ96EK5 621 aa22.99■■□□□ 1.27
CDX1-202ENST00000616154 FEZ1Q99689 392 aa22.99■■□□□ 1.27
CDX1-202ENST00000616154 SZT2Q5T011 3432 aa22.99■■□□□ 1.27
CDX1-202ENST00000616154 CYP2B6P20813 491 aa22.98■■□□□ 1.27
CDX1-202ENST00000616154 Q3C1V9 767 aa22.98■■□□□ 1.27
CDX1-202ENST00000616154 CERKLQ49MI3 558 aaPredicted RBP22.98■■□□□ 1.27
CDX1-202ENST00000616154 MAP3K21Q5TCX8 1036 aa22.98■■□□□ 1.27
CDX1-202ENST00000616154 POTEEQ6S8J3 1075 aa22.98■■□□□ 1.27
CDX1-202ENST00000616154 NECAB2Q7Z6G3 386 aa22.98■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms