RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 TNKSO95271 1327 aa16.04■□□□□ 0.16
COL6A1-207ENST00000612273 NEK11Q8NG66 645 aa16.04■□□□□ 0.16
COL6A1-207ENST00000612273 CD44P16070 742 aaKnown RBP16.03■□□□□ 0.16
COL6A1-207ENST00000612273 H2AFXP16104 143 aaPredicted RBP16.03■□□□□ 0.16
COL6A1-207ENST00000612273 PTPREP23469 700 aa16.03■□□□□ 0.16
COL6A1-207ENST00000612273 PPP2R3AQ06190 1150 aa16.03■□□□□ 0.16
COL6A1-207ENST00000612273 GABPB1Q06547 395 aaPredicted RBP16.03■□□□□ 0.16
COL6A1-207ENST00000612273 TRIM28Q13263 835 aaKnown RBP16.03■□□□□ 0.16
COL6A1-207ENST00000612273 TEX13AQ9BXU3 409 aaPredicted RBP16.03■□□□□ 0.16
COL6A1-207ENST00000612273 VPS16Q9H269 839 aa16.03■□□□□ 0.16
COL6A1-207ENST00000612273 ABL1P00519 1130 aa16.03■□□□□ 0.16
COL6A1-207ENST00000612273 VEGFAP15692 232 aaPredicted RBP16.03■□□□□ 0.16
COL6A1-207ENST00000612273 SGMS1Q86VZ5 419 aa16.03■□□□□ 0.16
COL6A1-207ENST00000612273 IGSF22Q8N9C0 903 aa16.03■□□□□ 0.16
COL6A1-207ENST00000612273 CAMTA1Q9Y6Y1 1673 aa16.03■□□□□ 0.16
COL6A1-207ENST00000612273 CYP19A1P11511 503 aaPredicted RBP16.02■□□□□ 0.16
COL6A1-207ENST00000612273 PLA2G4AP47712 749 aa16.02■□□□□ 0.16
COL6A1-207ENST00000612273 RBL2Q08999 1139 aa16.02■□□□□ 0.16
COL6A1-207ENST00000612273 FAM47AQ5JRC9 791 aa16.02■□□□□ 0.16
COL6A1-207ENST00000612273 PPFIBP1Q86W92 1011 aa16.02■□□□□ 0.16
COL6A1-207ENST00000612273 TMEM139Q8IV31 216 aa16.02■□□□□ 0.16
COL6A1-207ENST00000612273 SYMPKQ92797 1274 aaKnown RBP16.02■□□□□ 0.16
COL6A1-207ENST00000612273 KRT23Q9C075 422 aa16.02■□□□□ 0.16
COL6A1-207ENST00000612273 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.02■□□□□ 0.16
COL6A1-207ENST00000612273 MDM2Q00987 491 aaPredicted RBP16.02■□□□□ 0.16
COL6A1-207ENST00000612273 RILPL1Q5EBL4 403 aa16.02■□□□□ 0.16
COL6A1-207ENST00000612273 RASSF8Q8NHQ8 419 aa16.02■□□□□ 0.16
COL6A1-207ENST00000612273 TRIM75PA6NK02 468 aa16.02■□□□□ 0.15
COL6A1-207ENST00000612273 TADA3O75528 432 aa16.02■□□□□ 0.15
COL6A1-207ENST00000612273 PPARAQ07869 468 aa16.02■□□□□ 0.15
COL6A1-207ENST00000612273 SHISA4Q96DD7 197 aa16.02■□□□□ 0.15
COL6A1-207ENST00000612273 HINFPQ9BQA5 517 aa16.02■□□□□ 0.15
COL6A1-207ENST00000612273 DEXIO95424 95 aa16.01■□□□□ 0.15
COL6A1-207ENST00000612273 MCM7P33993 719 aa16.01■□□□□ 0.15
COL6A1-207ENST00000612273 LIFRP42702 1097 aa16.01■□□□□ 0.15
COL6A1-207ENST00000612273 MCM6Q14566 821 aa16.01■□□□□ 0.15
COL6A1-207ENST00000612273 WWC2Q6AWC2 1192 aa16.01■□□□□ 0.15
COL6A1-207ENST00000612273 WASF1Q92558 559 aa16.01■□□□□ 0.15
COL6A1-207ENST00000612273 FBXO3Q9UK99 471 aa16.01■□□□□ 0.15
COL6A1-207ENST00000612273 ZNF569Q5MCW4 686 aa16.01■□□□□ 0.15
COL6A1-207ENST00000612273 NUTM2AQ8IVF1 878 aaPredicted RBP16.01■□□□□ 0.15
COL6A1-207ENST00000612273 ACRBPQ8NEB7 543 aa16.01■□□□□ 0.15
COL6A1-207ENST00000612273 SLAIN2Q9P270 581 aa16.01■□□□□ 0.15
COL6A1-207ENST00000612273 CTNND2Q9UQB3 1225 aa16.01■□□□□ 0.15
COL6A1-207ENST00000612273 NIP7Q9Y221 180 aaKnown RBP eCLIP16.01■□□□□ 0.15
COL6A1-207ENST00000612273 NWD2Q9ULI1 1742 aa16■□□□□ 0.15
COL6A1-207ENST00000612273 CCP110O43303 1012 aa16■□□□□ 0.15
COL6A1-207ENST00000612273 SASH3O75995 380 aa16■□□□□ 0.15
COL6A1-207ENST00000612273 RHOXF2BP0C7M4 288 aa16■□□□□ 0.15
COL6A1-207ENST00000612273 CASP14P31944 242 aa16■□□□□ 0.15
COL6A1-207ENST00000612273 SKIDA1Q1XH10 827 aa16■□□□□ 0.15
COL6A1-207ENST00000612273 RHOXF2Q9BQY4 288 aa16■□□□□ 0.15
COL6A1-207ENST00000612273 PLA2G12BQ9BX93 195 aa16■□□□□ 0.15
COL6A1-207ENST00000612273 ABCC6O95255 1503 aa16■□□□□ 0.15
COL6A1-207ENST00000612273 ARID4AP29374 1257 aaPredicted RBP16■□□□□ 0.15
COL6A1-207ENST00000612273 NKX1-1Q15270 411 aaPredicted RBP16■□□□□ 0.15
COL6A1-207ENST00000612273 RAD9BQ6WBX8 426 aa16■□□□□ 0.15
COL6A1-207ENST00000612273 CDC5LQ99459 802 aaKnown RBP16■□□□□ 0.15
COL6A1-207ENST00000612273 CNNM2Q9H8M5 875 aa16■□□□□ 0.15
COL6A1-207ENST00000612273 TFR2Q9UP52 801 aa16■□□□□ 0.15
COL6A1-207ENST00000612273 SOS2Q07890 1332 aaPredicted RBP16■□□□□ 0.15
COL6A1-207ENST00000612273 IGHMBP2P38935 993 aaKnown RBP16■□□□□ 0.15
COL6A1-207ENST00000612273 ST5P78524 1137 aa16■□□□□ 0.15
COL6A1-207ENST00000612273 KIF4BQ2VIQ3 1234 aa16■□□□□ 0.15
COL6A1-207ENST00000612273 IFIT1BQ5T764 474 aaKnown RBP16■□□□□ 0.15
COL6A1-207ENST00000612273 PIK3AP1Q6ZUJ8 805 aa16■□□□□ 0.15
COL6A1-207ENST00000612273 MLKLQ8NB16 471 aa16■□□□□ 0.15
COL6A1-207ENST00000612273 PARD6BQ9BYG5 372 aa16■□□□□ 0.15
COL6A1-207ENST00000612273 SUGCTQ9HAC7 445 aa16■□□□□ 0.15
COL6A1-207ENST00000612273 ADAMTS3O15072 1205 aa15.99■□□□□ 0.15
COL6A1-207ENST00000612273 ACTN4O43707 911 aaKnown RBP15.99■□□□□ 0.15
COL6A1-207ENST00000612273 RASGRP4Q8TDF6 673 aa15.99■□□□□ 0.15
COL6A1-207ENST00000612273 PHLPP2Q6ZVD8 1323 aa15.99■□□□□ 0.15
COL6A1-207ENST00000612273 SRCAPQ6ZRS2 3230 aa15.99■□□□□ 0.15
COL6A1-207ENST00000612273 AKR1B15C9JRZ8 316 aaPredicted RBP15.99■□□□□ 0.15
COL6A1-207ENST00000612273 GTF2E1P29083 439 aaPredicted RBP15.99■□□□□ 0.15
COL6A1-207ENST00000612273 CHRNDQ07001 517 aa15.99■□□□□ 0.15
COL6A1-207ENST00000612273 TAB2Q9NYJ8 693 aa15.99■□□□□ 0.15
COL6A1-207ENST00000612273 PHRF1Q9P1Y6 1649 aaKnown RBP15.99■□□□□ 0.15
COL6A1-207ENST00000612273 N4BP3O15049 544 aa15.99■□□□□ 0.15
COL6A1-207ENST00000612273 PHACTR2O75167 634 aa15.99■□□□□ 0.15
COL6A1-207ENST00000612273 MORC3Q14149 939 aa15.99■□□□□ 0.15
COL6A1-207ENST00000612273 RRAGBQ5VZM2 374 aa15.99■□□□□ 0.15
COL6A1-207ENST00000612273 TRPM3Q9HCF6 1732 aaPredicted RBP15.98■□□□□ 0.15
COL6A1-207ENST00000612273 SYNRGQ9UMZ2 1314 aa15.98■□□□□ 0.15
COL6A1-207ENST00000612273 PTGDRQ13258 359 aa15.98■□□□□ 0.15
COL6A1-207ENST00000612273 ENAHQ8N8S7 591 aaPredicted RBP15.98■□□□□ 0.15
COL6A1-207ENST00000612273 SRPRBQ9Y5M8 271 aaKnown RBP15.98■□□□□ 0.15
COL6A1-207ENST00000612273 MAGEB6P1A0A0J9YX57 407 aa15.98■□□□□ 0.15
COL6A1-207ENST00000612273 CCDC196A0A1B0GTZ2 297 aa15.98■□□□□ 0.15
COL6A1-207ENST00000612273 USP17L12C9JPN9 530 aa15.98■□□□□ 0.15
COL6A1-207ENST00000612273 USP17L21D6R901 530 aa15.98■□□□□ 0.15
COL6A1-207ENST00000612273 ERCC3P19447 782 aa15.98■□□□□ 0.15
COL6A1-207ENST00000612273 DPYDQ12882 1025 aa15.98■□□□□ 0.15
COL6A1-207ENST00000612273 DHX8Q14562 1220 aaKnown RBP15.98■□□□□ 0.15
COL6A1-207ENST00000612273 ENOX1Q8TC92 643 aaKnown RBP15.98■□□□□ 0.15
COL6A1-207ENST00000612273 ESR2Q92731 530 aa15.98■□□□□ 0.15
COL6A1-207ENST00000612273 WDR19Q8NEZ3 1342 aa15.97■□□□□ 0.15
COL6A1-207ENST00000612273 STX10O60499 249 aa15.97■□□□□ 0.15
COL6A1-207ENST00000612273 CCDC175P0C221 793 aa15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms