RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 SHROOM1Q2M3G4 852 aaPredicted RBP19.76■□□□□ 0.75
CCDC28A-202ENST00000611852 C16orf86Q6ZW13 317 aa19.76■□□□□ 0.75
CCDC28A-202ENST00000611852 ROBO3Q96MS0 1386 aa19.75■□□□□ 0.75
CCDC28A-202ENST00000611852 RAD50Q92878 1312 aa19.75■□□□□ 0.75
CCDC28A-202ENST00000611852 MANSC4A6NHS7 340 aaPredicted RBP19.75■□□□□ 0.75
CCDC28A-202ENST00000611852 ASNSP08243 561 aa19.75■□□□□ 0.75
CCDC28A-202ENST00000611852 CDK8P49336 464 aa19.75■□□□□ 0.75
CCDC28A-202ENST00000611852 MAP2K1Q02750 393 aaPredicted RBP19.75■□□□□ 0.75
CCDC28A-202ENST00000611852 CERKLQ49MI3 558 aaPredicted RBP19.75■□□□□ 0.75
CCDC28A-202ENST00000611852 REM2Q8IYK8 340 aaPredicted RBP19.75■□□□□ 0.75
CCDC28A-202ENST00000611852 RUFY2Q8WXA3 655 aa19.75■□□□□ 0.75
CCDC28A-202ENST00000611852 MS4A4AQ96JQ5 239 aa19.75■□□□□ 0.75
CCDC28A-202ENST00000611852 ZHX2Q9Y6X8 837 aa19.75■□□□□ 0.75
CCDC28A-202ENST00000611852 FGAP02671 866 aa19.74■□□□□ 0.75
CCDC28A-202ENST00000611852 TM4SF4P48230 202 aa19.74■□□□□ 0.75
CCDC28A-202ENST00000611852 CCDC84Q86UT8 332 aaPredicted RBP19.74■□□□□ 0.75
CCDC28A-202ENST00000611852 GINM1Q9NU53 330 aa19.74■□□□□ 0.75
CCDC28A-202ENST00000611852 WBP1LQ9NX94 342 aa19.74■□□□□ 0.75
CCDC28A-202ENST00000611852 ZBTB21Q9ULJ3 1066 aa19.74■□□□□ 0.75
CCDC28A-202ENST00000611852 KCNH4Q9UQ05 1017 aa19.74■□□□□ 0.75
CCDC28A-202ENST00000611852 PHIPQ8WWQ0 1821 aa19.74■□□□□ 0.75
CCDC28A-202ENST00000611852 ZMYM6O95789 1325 aa19.73■□□□□ 0.75
CCDC28A-202ENST00000611852 GTF2A2P52657 109 aa19.73■□□□□ 0.75
CCDC28A-202ENST00000611852 SREBF2Q12772 1141 aa19.73■□□□□ 0.75
CCDC28A-202ENST00000611852 AFG3L2Q9Y4W6 797 aa19.73■□□□□ 0.75
CCDC28A-202ENST00000611852 GH2P01242 217 aa19.72■□□□□ 0.75
CCDC28A-202ENST00000611852 INHBEP58166 350 aa19.72■□□□□ 0.75
CCDC28A-202ENST00000611852 PPARAQ07869 468 aa19.72■□□□□ 0.75
CCDC28A-202ENST00000611852 ABCB5Q2M3G0 1257 aa19.72■□□□□ 0.75
CCDC28A-202ENST00000611852 MYH8P13535 1937 aa19.72■□□□□ 0.75
CCDC28A-202ENST00000611852 TESPA1A2RU30 521 aaPredicted RBP19.71■□□□□ 0.75
CCDC28A-202ENST00000611852 USP17L5A8MUK1 530 aa19.71■□□□□ 0.75
CCDC28A-202ENST00000611852 SGSM2O43147 1006 aa19.71■□□□□ 0.75
CCDC28A-202ENST00000611852 SNAPC2Q13487 334 aa19.71■□□□□ 0.75
CCDC28A-202ENST00000611852 STK11IPQ8N1F8 1099 aa19.71■□□□□ 0.75
CCDC28A-202ENST00000611852 DSCC1Q9BVC3 393 aa19.71■□□□□ 0.75
CCDC28A-202ENST00000611852 CXCL11O14625 94 aa19.71■□□□□ 0.75
CCDC28A-202ENST00000611852 TBC1D2Q9BYX2 928 aa19.71■□□□□ 0.75
CCDC28A-202ENST00000611852 CCL15-CCL14A0A0B4J2E2 113 aa19.7■□□□□ 0.74
CCDC28A-202ENST00000611852 TRIM75PA6NK02 468 aa19.7■□□□□ 0.74
CCDC28A-202ENST00000611852 CETPP11597 493 aa19.7■□□□□ 0.74
CCDC28A-202ENST00000611852 CCL15Q16663 113 aa19.7■□□□□ 0.74
CCDC28A-202ENST00000611852 ZNF280CQ8ND82 737 aa19.7■□□□□ 0.74
CCDC28A-202ENST00000611852 BRI3BPQ8WY22 251 aa19.7■□□□□ 0.74
CCDC28A-202ENST00000611852 CCDC17Q96LX7 622 aa19.7■□□□□ 0.74
CCDC28A-202ENST00000611852 PTPN18Q99952 460 aa19.7■□□□□ 0.74
CCDC28A-202ENST00000611852 CABP5Q9NP86 173 aa19.7■□□□□ 0.74
CCDC28A-202ENST00000611852 ANAPC4Q9UJX5 808 aa19.7■□□□□ 0.74
CCDC28A-202ENST00000611852 IGF2BP3O00425 579 aaKnown RBP eCLIP19.69■□□□□ 0.74
CCDC28A-202ENST00000611852 MPHOSPH10O00566 681 aaKnown RBP19.69■□□□□ 0.74
CCDC28A-202ENST00000611852 SLC3A2P08195 630 aaKnown RBP19.69■□□□□ 0.74
CCDC28A-202ENST00000611852 HSPA1AP0DMV8 641 aaKnown RBP19.69■□□□□ 0.74
CCDC28A-202ENST00000611852 HSPA1BP0DMV9 641 aaKnown RBP19.69■□□□□ 0.74
CCDC28A-202ENST00000611852 AKR1B1P15121 316 aa19.69■□□□□ 0.74
CCDC28A-202ENST00000611852 RASA1P20936 1047 aa19.69■□□□□ 0.74
CCDC28A-202ENST00000611852 GUCY1A2P33402 732 aa19.69■□□□□ 0.74
CCDC28A-202ENST00000611852 CTDSPL2Q05D32 466 aa19.69■□□□□ 0.74
CCDC28A-202ENST00000611852 SPP2Q13103 211 aa19.69■□□□□ 0.74
CCDC28A-202ENST00000611852 RAB3GAP1Q15042 981 aa19.69■□□□□ 0.74
CCDC28A-202ENST00000611852 IFNL1Q8IU54 200 aa19.69■□□□□ 0.74
CCDC28A-202ENST00000611852 BEGAINQ9BUH8 593 aa19.69■□□□□ 0.74
CCDC28A-202ENST00000611852 WDR18Q9BV38 432 aa19.69■□□□□ 0.74
CCDC28A-202ENST00000611852 MKNK2Q9HBH9 465 aa19.69■□□□□ 0.74
CCDC28A-202ENST00000611852 AS3MTQ9HBK9 375 aa19.69■□□□□ 0.74
CCDC28A-202ENST00000611852 ZNF287Q9HBT7 754 aa19.69■□□□□ 0.74
CCDC28A-202ENST00000611852 A0A0G2JLL6 359 aaPredicted RBP19.68■□□□□ 0.74
CCDC28A-202ENST00000611852 CDC45O75419 566 aa19.68■□□□□ 0.74
CCDC28A-202ENST00000611852 PRDM1O75626 825 aa19.68■□□□□ 0.74
CCDC28A-202ENST00000611852 PDE4BQ07343 736 aa19.68■□□□□ 0.74
CCDC28A-202ENST00000611852 SEPT2Q15019 361 aa19.68■□□□□ 0.74
CCDC28A-202ENST00000611852 PRRT2Q7Z6L0 340 aaPredicted RBP19.68■□□□□ 0.74
CCDC28A-202ENST00000611852 ESYT1Q9BSJ8 1104 aa19.68■□□□□ 0.74
CCDC28A-202ENST00000611852 RNF186Q9NXI6 227 aa19.68■□□□□ 0.74
CCDC28A-202ENST00000611852 PTPRFP10586 1907 aa19.68■□□□□ 0.74
CCDC28A-202ENST00000611852 MOGSQ13724 837 aa19.67■□□□□ 0.74
CCDC28A-202ENST00000611852 TMEM179Q6ZVK1 233 aa19.67■□□□□ 0.74
CCDC28A-202ENST00000611852 HAND2P61296 217 aa19.66■□□□□ 0.74
CCDC28A-202ENST00000611852 PTH1RQ03431 593 aa19.66■□□□□ 0.74
CCDC28A-202ENST00000611852 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.66■□□□□ 0.74
CCDC28A-202ENST00000611852 TACC3Q9Y6A5 838 aa19.66■□□□□ 0.74
CCDC28A-202ENST00000611852 CA12O43570 354 aa19.66■□□□□ 0.74
CCDC28A-202ENST00000611852 TRPA1O75762 1119 aa19.66■□□□□ 0.74
CCDC28A-202ENST00000611852 FGRP09769 529 aa19.66■□□□□ 0.74
CCDC28A-202ENST00000611852 ZNF444Q8N0Y2 327 aaPredicted RBP19.66■□□□□ 0.74
CCDC28A-202ENST00000611852 FAM43AQ8N2R8 423 aa19.66■□□□□ 0.74
CCDC28A-202ENST00000611852 NBPF3Q9H094 633 aa19.66■□□□□ 0.74
CCDC28A-202ENST00000611852 INCENPQ9NQS7 918 aa19.66■□□□□ 0.74
CCDC28A-202ENST00000611852 SAGE1Q9NXZ1 904 aa19.66■□□□□ 0.74
CCDC28A-202ENST00000611852 CTNNA3Q9UI47 895 aa19.66■□□□□ 0.74
CCDC28A-202ENST00000611852 BTBD19C9JJ37 291 aa19.65■□□□□ 0.74
CCDC28A-202ENST00000611852 USP17L10C9JJH3 530 aa19.65■□□□□ 0.74
CCDC28A-202ENST00000611852 FOXN1O15353 648 aa19.65■□□□□ 0.74
CCDC28A-202ENST00000611852 ALDH1A1P00352 501 aa19.65■□□□□ 0.74
CCDC28A-202ENST00000611852 BACE1P56817 501 aa19.65■□□□□ 0.74
CCDC28A-202ENST00000611852 MTMR2Q13614 643 aa19.65■□□□□ 0.74
CCDC28A-202ENST00000611852 OTUD7BQ6GQQ9 843 aa19.65■□□□□ 0.74
CCDC28A-202ENST00000611852 CASC1Q6TDU7 716 aa19.65■□□□□ 0.74
CCDC28A-202ENST00000611852 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.65■□□□□ 0.74
CCDC28A-202ENST00000611852 GREB1LQ9C091 1923 aaPredicted RBP19.64■□□□□ 0.73
CCDC28A-202ENST00000611852 ZNF213O14771 459 aa19.64■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms