RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 NUP133Q8WUM0 1156 aa20.89■□□□□ 0.93
UPF1-210ENST00000600689 RFX7Q2KHR2 1363 aa20.88■□□□□ 0.93
UPF1-210ENST00000600689 GOLGA6L9A6NEM1 432 aa20.88■□□□□ 0.93
UPF1-210ENST00000600689 PES1O00541 588 aaKnown RBP20.88■□□□□ 0.93
UPF1-210ENST00000600689 PPP6R2O75170 966 aa20.88■□□□□ 0.93
UPF1-210ENST00000600689 CASP14P31944 242 aa20.88■□□□□ 0.93
UPF1-210ENST00000600689 ACTN2P35609 894 aa20.88■□□□□ 0.93
UPF1-210ENST00000600689 DIS3L2Q8IYB7 885 aaKnown RBP20.88■□□□□ 0.93
UPF1-210ENST00000600689 NBPF3Q9H094 633 aa20.88■□□□□ 0.93
UPF1-210ENST00000600689 CCDC151A5D8V7 595 aa20.88■□□□□ 0.93
UPF1-210ENST00000600689 ZMYND10O75800 440 aa20.88■□□□□ 0.93
UPF1-210ENST00000600689 NCAPH2Q6IBW4 605 aa20.88■□□□□ 0.93
UPF1-210ENST00000600689 APPBP2Q92624 585 aa20.88■□□□□ 0.93
UPF1-210ENST00000600689 TFR2Q9UP52 801 aa20.88■□□□□ 0.93
UPF1-210ENST00000600689 NHSL1Q5SYE7 1610 aa20.88■□□□□ 0.93
UPF1-210ENST00000600689 ZMYM6O95789 1325 aa20.88■□□□□ 0.93
UPF1-210ENST00000600689 ATP8B1O43520 1251 aa20.87■□□□□ 0.93
UPF1-210ENST00000600689 GOLGA5Q8TBA6 731 aa20.87■□□□□ 0.93
UPF1-210ENST00000600689 ADGRG1Q9Y653 693 aa20.87■□□□□ 0.93
UPF1-210ENST00000600689 BEND6Q5SZJ8 279 aaPredicted RBP20.87■□□□□ 0.93
UPF1-210ENST00000600689 HOOK1Q9UJC3 728 aaKnown RBP20.87■□□□□ 0.93
UPF1-210ENST00000600689 UBN2Q6ZU65 1347 aa20.87■□□□□ 0.93
UPF1-210ENST00000600689 IFIT3O14879 490 aaKnown RBP20.86■□□□□ 0.93
UPF1-210ENST00000600689 HSP90B2PQ58FF3 399 aa20.86■□□□□ 0.93
UPF1-210ENST00000600689 MUM1L1Q5H9M0 696 aa20.86■□□□□ 0.93
UPF1-210ENST00000600689 KIF6Q6ZMV9 814 aa20.86■□□□□ 0.93
UPF1-210ENST00000600689 SRLQ86TD4 932 aa20.86■□□□□ 0.93
UPF1-210ENST00000600689 EXOC4Q96A65 974 aa20.86■□□□□ 0.93
UPF1-210ENST00000600689 FAM205CA6NFA0 338 aa20.86■□□□□ 0.93
UPF1-210ENST00000600689 NUTM2AQ8IVF1 878 aaPredicted RBP20.86■□□□□ 0.93
UPF1-210ENST00000600689 NOA1Q8NC60 698 aaKnown RBP20.86■□□□□ 0.93
UPF1-210ENST00000600689 MAPK8IP1Q9UQF2 711 aa20.86■□□□□ 0.93
UPF1-210ENST00000600689 A0A0G2JS52 829 aa20.86■□□□□ 0.93
UPF1-210ENST00000600689 ENC1O14682 589 aa20.86■□□□□ 0.93
UPF1-210ENST00000600689 HDXQ7Z353 690 aa20.86■□□□□ 0.93
UPF1-210ENST00000600689 OXER1Q8TDS5 423 aa20.86■□□□□ 0.93
UPF1-210ENST00000600689 TSPYL1Q9H0U9 437 aa20.86■□□□□ 0.93
UPF1-210ENST00000600689 CABP5Q9NP86 173 aa20.86■□□□□ 0.93
UPF1-210ENST00000600689 CDKL5O76039 1030 aa20.85■□□□□ 0.93
UPF1-210ENST00000600689 SSRP1Q08945 709 aaKnown RBP20.85■□□□□ 0.93
UPF1-210ENST00000600689 TRIM10Q9UDY6 481 aa20.85■□□□□ 0.93
UPF1-210ENST00000600689 CDC23Q9UJX2 597 aa20.85■□□□□ 0.93
UPF1-210ENST00000600689 TOB1P50616 345 aaPredicted RBP20.85■□□□□ 0.93
UPF1-210ENST00000600689 SLF1Q9BQI6 1058 aa20.85■□□□□ 0.93
UPF1-210ENST00000600689 VPS16Q9H269 839 aa20.85■□□□□ 0.93
UPF1-210ENST00000600689 SLC12A7Q9Y666 1083 aa20.85■□□□□ 0.93
UPF1-210ENST00000600689 SH2B2O14492 632 aaPredicted RBP20.84■□□□□ 0.93
UPF1-210ENST00000600689 STARD3NLO95772 234 aa20.84■□□□□ 0.93
UPF1-210ENST00000600689 SAFBQ15424 915 aaKnown RBP eCLIP20.84■□□□□ 0.93
UPF1-210ENST00000600689 RIN2Q8WYP3 895 aaPredicted RBP20.84■□□□□ 0.93
UPF1-210ENST00000600689 EPSTI1Q96J88 318 aa20.84■□□□□ 0.93
UPF1-210ENST00000600689 ZBTB1Q9Y2K1 713 aa20.84■□□□□ 0.93
UPF1-210ENST00000600689 ITGB4P16144 1822 aa20.84■□□□□ 0.93
UPF1-210ENST00000600689 CTAGE9A4FU28 777 aa20.84■□□□□ 0.93
UPF1-210ENST00000600689 BRD3Q15059 726 aa20.84■□□□□ 0.93
UPF1-210ENST00000600689 NOSTRINQ8IVI9 506 aa20.84■□□□□ 0.93
UPF1-210ENST00000600689 CAPZA3Q96KX2 299 aa20.84■□□□□ 0.93
UPF1-210ENST00000600689 CSRNP2Q9H175 543 aa20.84■□□□□ 0.93
UPF1-210ENST00000600689 CD44P16070 742 aaKnown RBP20.84■□□□□ 0.93
UPF1-210ENST00000600689 ZNF18P17022 549 aa20.84■□□□□ 0.93
UPF1-210ENST00000600689 FXR1P51114 621 aaKnown RBP eCLIP20.84■□□□□ 0.93
UPF1-210ENST00000600689 MDM2Q00987 491 aaPredicted RBP20.84■□□□□ 0.93
UPF1-210ENST00000600689 HELBQ8NG08 1087 aaPredicted RBP20.84■□□□□ 0.93
UPF1-210ENST00000600689 GUCA1BQ9UMX6 200 aa20.84■□□□□ 0.93
UPF1-210ENST00000600689 CASP8Q14790 479 aa20.83■□□□□ 0.93
UPF1-210ENST00000600689 NR1I3Q14994 352 aa20.83■□□□□ 0.93
UPF1-210ENST00000600689 METTL24Q5JXM2 366 aa20.83■□□□□ 0.93
UPF1-210ENST00000600689 MYH15Q9Y2K3 1946 aa20.83■□□□□ 0.93
UPF1-210ENST00000600689 ERLIN1O75477 346 aa20.83■□□□□ 0.92
UPF1-210ENST00000600689 GSPT2Q8IYD1 628 aaKnown RBP20.83■□□□□ 0.92
UPF1-210ENST00000600689 GPR108Q9NPR9 543 aa20.83■□□□□ 0.92
UPF1-210ENST00000600689 SNAP23O00161 211 aa20.82■□□□□ 0.92
UPF1-210ENST00000600689 MAP2K7O14733 419 aa20.82■□□□□ 0.92
UPF1-210ENST00000600689 MCAMP43121 646 aa20.82■□□□□ 0.92
UPF1-210ENST00000600689 GPIHBP1Q8IV16 184 aa20.82■□□□□ 0.92
UPF1-210ENST00000600689 MLKLQ8NB16 471 aa20.82■□□□□ 0.92
UPF1-210ENST00000600689 ENOX1Q8TC92 643 aaKnown RBP20.82■□□□□ 0.92
UPF1-210ENST00000600689 BLZF1Q9H2G9 400 aa20.82■□□□□ 0.92
UPF1-210ENST00000600689 HDAC6Q9UBN7 1215 aa20.82■□□□□ 0.92
UPF1-210ENST00000600689 TBC1D2BQ9UPU7 963 aa20.82■□□□□ 0.92
UPF1-210ENST00000600689 MAP3K15Q6ZN16 1313 aa20.82■□□□□ 0.92
UPF1-210ENST00000600689 CTAGE15A4D2H0 777 aa20.82■□□□□ 0.92
UPF1-210ENST00000600689 CIAO1O76071 339 aa20.82■□□□□ 0.92
UPF1-210ENST00000600689 CTAGE8P0CG41 777 aa20.82■□□□□ 0.92
UPF1-210ENST00000600689 GIGYF2Q6Y7W6 1299 aaKnown RBP20.82■□□□□ 0.92
UPF1-210ENST00000600689 CTAGE6Q86UF2 777 aa20.82■□□□□ 0.92
UPF1-210ENST00000600689 CTAGE4Q8IX94 777 aa20.82■□□□□ 0.92
UPF1-210ENST00000600689 ZBTB38Q8NAP3 1195 aaPredicted RBP20.82■□□□□ 0.92
UPF1-210ENST00000600689 EEF2KMTQ96G04 330 aa20.82■□□□□ 0.92
UPF1-210ENST00000600689 NUP88Q99567 741 aaPredicted RBP20.82■□□□□ 0.92
UPF1-210ENST00000600689 EIF3JO75822 258 aaKnown RBP20.81■□□□□ 0.92
UPF1-210ENST00000600689 PCCAP05165 728 aaPredicted RBP20.81■□□□□ 0.92
UPF1-210ENST00000600689 CEP112Q8N8E3 955 aa20.81■□□□□ 0.92
UPF1-210ENST00000600689 FAM217BQ9NTX9 383 aaPredicted RBP20.81■□□□□ 0.92
UPF1-210ENST00000600689 AKAP2Q9Y2D5 859 aa20.81■□□□□ 0.92
UPF1-210ENST00000600689 LRRIQ3A6PVS8 624 aaPredicted RBP20.81■□□□□ 0.92
UPF1-210ENST00000600689 SRGAP2O75044 1071 aa20.81■□□□□ 0.92
UPF1-210ENST00000600689 CYP19A1P11511 503 aaPredicted RBP20.81■□□□□ 0.92
UPF1-210ENST00000600689 FKBP15Q5T1M5 1219 aa20.81■□□□□ 0.92
UPF1-210ENST00000600689 FAM204AQ9H8W3 233 aa20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms