RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 MYH2Q9UKX2 1941 aa17.17■□□□□ 0.34
SHKBP1-218ENST00000598907 MYCNP04198 464 aaPredicted RBP17.16■□□□□ 0.34
SHKBP1-218ENST00000598907 MAP3K10Q02779 954 aa17.16■□□□□ 0.34
SHKBP1-218ENST00000598907 PANK1Q8TE04 598 aa17.16■□□□□ 0.34
SHKBP1-218ENST00000598907 P2RX7Q99572 595 aaKnown RBP17.16■□□□□ 0.34
SHKBP1-218ENST00000598907 DDX20Q9UHI6 824 aaKnown RBP17.16■□□□□ 0.34
SHKBP1-218ENST00000598907 DNM1LO00429 736 aa17.15■□□□□ 0.34
SHKBP1-218ENST00000598907 SLC5A1P13866 664 aa17.15■□□□□ 0.34
SHKBP1-218ENST00000598907 FGFR2P21802 821 aa17.15■□□□□ 0.34
SHKBP1-218ENST00000598907 MAPK4P31152 587 aa17.15■□□□□ 0.34
SHKBP1-218ENST00000598907 MTMR2Q13614 643 aa17.15■□□□□ 0.34
SHKBP1-218ENST00000598907 TRIM60Q495X7 471 aa17.15■□□□□ 0.34
SHKBP1-218ENST00000598907 GJC2Q5T442 439 aaPredicted RBP17.15■□□□□ 0.34
SHKBP1-218ENST00000598907 GPR142Q7Z601 462 aa17.15■□□□□ 0.34
SHKBP1-218ENST00000598907 TMEM57Q8N5G2 664 aa17.15■□□□□ 0.34
SHKBP1-218ENST00000598907 IL27Q8NEV9 243 aa17.15■□□□□ 0.34
SHKBP1-218ENST00000598907 USP6NLQ92738 828 aa17.15■□□□□ 0.34
SHKBP1-218ENST00000598907 ASB2Q96Q27 587 aa17.15■□□□□ 0.34
SHKBP1-218ENST00000598907 NDUFB9Q9Y6M9 179 aa17.15■□□□□ 0.34
SHKBP1-218ENST00000598907 RLFQ13129 1914 aa17.14■□□□□ 0.33
SHKBP1-218ENST00000598907 NBPF7P0C2Y1 421 aaPredicted RBP17.14■□□□□ 0.33
SHKBP1-218ENST00000598907 DNAJB2P25686 324 aa17.14■□□□□ 0.33
SHKBP1-218ENST00000598907 HERVK_113P62684 666 aa17.14■□□□□ 0.33
SHKBP1-218ENST00000598907 MFSD14CQ5VZR4 134 aa17.14■□□□□ 0.33
SHKBP1-218ENST00000598907 SH3RF1Q7Z6J0 888 aa17.14■□□□□ 0.33
SHKBP1-218ENST00000598907 FTSJ3Q8IY81 847 aaKnown RBP17.14■□□□□ 0.33
SHKBP1-218ENST00000598907 ATXN2LQ8WWM7 1075 aaKnown RBP17.14■□□□□ 0.33
SHKBP1-218ENST00000598907 PDLIM7Q9NR12 457 aa17.14■□□□□ 0.33
SHKBP1-218ENST00000598907 FLRT1Q9NZU1 646 aa17.14■□□□□ 0.33
SHKBP1-218ENST00000598907 ERVK-9P63128 1117 aa17.13■□□□□ 0.33
SHKBP1-218ENST00000598907 ERVK-24P63145 666 aa17.13■□□□□ 0.33
SHKBP1-218ENST00000598907 MVPQ14764 893 aaKnown RBP17.13■□□□□ 0.33
SHKBP1-218ENST00000598907 MORN1Q5T089 497 aa17.13■□□□□ 0.33
SHKBP1-218ENST00000598907 PLEKHH3Q7Z736 793 aa17.13■□□□□ 0.33
SHKBP1-218ENST00000598907 DZIP1Q86YF9 867 aaKnown RBP17.13■□□□□ 0.33
SHKBP1-218ENST00000598907 LPAR1Q92633 364 aa17.13■□□□□ 0.33
SHKBP1-218ENST00000598907 NECAB3Q96P71 396 aaPredicted RBP17.13■□□□□ 0.33
SHKBP1-218ENST00000598907 SRCIN1Q9C0H9 1055 aa17.13■□□□□ 0.33
SHKBP1-218ENST00000598907 TMOD4Q9NZQ9 345 aa17.13■□□□□ 0.33
SHKBP1-218ENST00000598907 BDP1A6H8Y1 2624 aa17.12■□□□□ 0.33
SHKBP1-218ENST00000598907 USP17L5A8MUK1 530 aa17.12■□□□□ 0.33
SHKBP1-218ENST00000598907 ALDH1L1O75891 902 aa17.12■□□□□ 0.33
SHKBP1-218ENST00000598907 BTDP43251 543 aa17.12■□□□□ 0.33
SHKBP1-218ENST00000598907 EPHB4P54760 987 aa17.12■□□□□ 0.33
SHKBP1-218ENST00000598907 RRP1BQ14684 758 aaKnown RBP17.12■□□□□ 0.33
SHKBP1-218ENST00000598907 WDR78Q5VTH9 848 aa17.12■□□□□ 0.33
SHKBP1-218ENST00000598907 ANO1Q5XXA6 986 aa17.12■□□□□ 0.33
SHKBP1-218ENST00000598907 SLC39A5Q6ZMH5 540 aa17.12■□□□□ 0.33
SHKBP1-218ENST00000598907 ANKRD44Q8N8A2 993 aa17.12■□□□□ 0.33
SHKBP1-218ENST00000598907 OSBPL5Q9H0X9 879 aaPredicted RBP17.12■□□□□ 0.33
SHKBP1-218ENST00000598907 GAKO14976 1311 aa17.12■□□□□ 0.33
SHKBP1-218ENST00000598907 TRIM43BA6NCK2 446 aa17.11■□□□□ 0.33
SHKBP1-218ENST00000598907 KBTBD13C9JR72 458 aa17.11■□□□□ 0.33
SHKBP1-218ENST00000598907 MAP2K5Q13163 448 aa17.11■□□□□ 0.33
SHKBP1-218ENST00000598907 CCDC85BQ15834 202 aaPredicted RBP17.11■□□□□ 0.33
SHKBP1-218ENST00000598907 Q3C1V9 767 aa17.11■□□□□ 0.33
SHKBP1-218ENST00000598907 SH3D19Q5HYK7 790 aa17.11■□□□□ 0.33
SHKBP1-218ENST00000598907 POTEEQ6S8J3 1075 aa17.11■□□□□ 0.33
SHKBP1-218ENST00000598907 LPIN2Q92539 896 aa17.11■□□□□ 0.33
SHKBP1-218ENST00000598907 TRIM43Q96BQ3 446 aaPredicted RBP17.11■□□□□ 0.33
SHKBP1-218ENST00000598907 GAS2L1Q99501 681 aaPredicted RBP17.11■□□□□ 0.33
SHKBP1-218ENST00000598907 ZNF576Q9H609 170 aa17.11■□□□□ 0.33
SHKBP1-218ENST00000598907 AS3MTQ9HBK9 375 aa17.11■□□□□ 0.33
SHKBP1-218ENST00000598907 RBPJLQ9UBG7 517 aa17.11■□□□□ 0.33
SHKBP1-218ENST00000598907 COG6Q9Y2V7 657 aa17.11■□□□□ 0.33
SHKBP1-218ENST00000598907 MSCO60682 206 aa17.1■□□□□ 0.33
SHKBP1-218ENST00000598907 CYP2C19P33261 490 aa17.1■□□□□ 0.33
SHKBP1-218ENST00000598907 CAP2P40123 477 aa17.1■□□□□ 0.33
SHKBP1-218ENST00000598907 MRPS5P82675 430 aaKnown RBP17.1■□□□□ 0.33
SHKBP1-218ENST00000598907 RABL6Q3YEC7 729 aaPredicted RBP17.1■□□□□ 0.33
SHKBP1-218ENST00000598907 FERMT2Q96AC1 680 aa17.1■□□□□ 0.33
SHKBP1-218ENST00000598907 CRBNQ96SW2 442 aa17.1■□□□□ 0.33
SHKBP1-218ENST00000598907 TBC1D2Q9BYX2 928 aa17.1■□□□□ 0.33
SHKBP1-218ENST00000598907 HCN4Q9Y3Q4 1203 aa17.1■□□□□ 0.33
SHKBP1-218ENST00000598907 TBC1D12O60347 775 aa17.09■□□□□ 0.33
SHKBP1-218ENST00000598907 IRX6P78412 446 aaPredicted RBP17.09■□□□□ 0.33
SHKBP1-218ENST00000598907 TRPV1Q8NER1 839 aa17.09■□□□□ 0.33
SHKBP1-218ENST00000598907 TIFAQ96CG3 184 aa17.09■□□□□ 0.33
SHKBP1-218ENST00000598907 EDC3Q96F86 508 aaKnown RBP17.09■□□□□ 0.33
SHKBP1-218ENST00000598907 C1QTNF1Q9BXJ1 281 aa17.09■□□□□ 0.33
SHKBP1-218ENST00000598907 GNL3LQ9NVN8 582 aaKnown RBP17.09■□□□□ 0.33
SHKBP1-218ENST00000598907 ABCF2Q9UG63 623 aa17.09■□□□□ 0.33
SHKBP1-218ENST00000598907 UTYO14607 1347 aa17.09■□□□□ 0.33
SHKBP1-218ENST00000598907 SALL1Q9NSC2 1324 aa17.09■□□□□ 0.33
SHKBP1-218ENST00000598907 ITGB8P26012 769 aa17.08■□□□□ 0.32
SHKBP1-218ENST00000598907 PHKA1P46020 1223 aa17.08■□□□□ 0.32
SHKBP1-218ENST00000598907 ATP2B2Q01814 1243 aa17.08■□□□□ 0.32
SHKBP1-218ENST00000598907 ITPRIPQ8IWB1 547 aa17.08■□□□□ 0.32
SHKBP1-218ENST00000598907 PRDM12Q9H4Q4 367 aa17.08■□□□□ 0.32
SHKBP1-218ENST00000598907 DDX19BQ9UMR2 479 aa17.08■□□□□ 0.32
SHKBP1-218ENST00000598907 MROH7-TTC4A0A0A0MT08 1334 aa17.07■□□□□ 0.32
SHKBP1-218ENST00000598907 SYNGAP1Q96PV0 1343 aa17.07■□□□□ 0.32
SHKBP1-218ENST00000598907 HOXA7P31268 230 aaPredicted RBP17.07■□□□□ 0.32
SHKBP1-218ENST00000598907 ADCYAP1R1P41586 468 aa17.07■□□□□ 0.32
SHKBP1-218ENST00000598907 BACE1P56817 501 aa17.07■□□□□ 0.32
SHKBP1-218ENST00000598907 ARRDC4Q8NCT1 418 aa17.07■□□□□ 0.32
SHKBP1-218ENST00000598907 USP44Q9H0E7 712 aa17.07■□□□□ 0.32
SHKBP1-218ENST00000598907 DENND2AQ9ULE3 1009 aa17.07■□□□□ 0.32
SHKBP1-218ENST00000598907 EYA2O00167 538 aa17.06■□□□□ 0.32
SHKBP1-218ENST00000598907 TLE2Q04725 743 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms