RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 MAGEA10P43363 369 aaPredicted RBP20.24■□□□□ 0.83
SHKBP1-215ENST00000597649 IRX3P78415 501 aaPredicted RBP20.24■□□□□ 0.83
SHKBP1-215ENST00000597649 Q7L0L9 218 aa20.24■□□□□ 0.83
SHKBP1-215ENST00000597649 ADGRA1Q86SQ6 560 aa20.24■□□□□ 0.83
SHKBP1-215ENST00000597649 TGFBRAP1Q8WUH2 860 aa20.24■□□□□ 0.83
SHKBP1-215ENST00000597649 USP6NLQ92738 828 aa20.24■□□□□ 0.83
SHKBP1-215ENST00000597649 AATFQ9NY61 560 aaKnown RBP eCLIP20.24■□□□□ 0.83
SHKBP1-215ENST00000597649 PFASO15067 1338 aa20.24■□□□□ 0.83
SHKBP1-215ENST00000597649 PRKAR2AP13861 404 aaKnown RBP20.23■□□□□ 0.83
SHKBP1-215ENST00000597649 PPP4CP60510 307 aa20.23■□□□□ 0.83
SHKBP1-215ENST00000597649 HERVK_113P62684 666 aa20.23■□□□□ 0.83
SHKBP1-215ENST00000597649 MAPKAPK5Q8IW41 473 aa20.23■□□□□ 0.83
SHKBP1-215ENST00000597649 GPRC5AQ8NFJ5 357 aa20.23■□□□□ 0.83
SHKBP1-215ENST00000597649 DHX36Q9H2U1 1008 aaKnown RBP20.23■□□□□ 0.83
SHKBP1-215ENST00000597649 GDF11O95390 407 aa20.22■□□□□ 0.83
SHKBP1-215ENST00000597649 ASNSP08243 561 aa20.22■□□□□ 0.83
SHKBP1-215ENST00000597649 XRCC5P13010 732 aaKnown RBP20.22■□□□□ 0.83
SHKBP1-215ENST00000597649 CACNB2Q08289 660 aaPredicted RBP20.22■□□□□ 0.83
SHKBP1-215ENST00000597649 LHX8Q68G74 356 aa20.22■□□□□ 0.83
SHKBP1-215ENST00000597649 NAA16Q6N069 864 aaPredicted RBP20.22■□□□□ 0.83
SHKBP1-215ENST00000597649 GPR153Q6NV75 609 aa20.22■□□□□ 0.83
SHKBP1-215ENST00000597649 NUDT12Q9BQG2 462 aa20.22■□□□□ 0.83
SHKBP1-215ENST00000597649 PORCNQ9H237 461 aa20.22■□□□□ 0.83
SHKBP1-215ENST00000597649 TMOD4Q9NZQ9 345 aa20.22■□□□□ 0.83
SHKBP1-215ENST00000597649 PALD1Q9ULE6 856 aa20.22■□□□□ 0.83
SHKBP1-215ENST00000597649 SIPA1L1O43166 1804 aa20.21■□□□□ 0.83
SHKBP1-215ENST00000597649 UQCRFS1P1P0C7P4 283 aa20.21■□□□□ 0.83
SHKBP1-215ENST00000597649 COL6A1P12109 1028 aa20.21■□□□□ 0.83
SHKBP1-215ENST00000597649 G3BP1Q13283 466 aaKnown RBP eCLIP20.21■□□□□ 0.83
SHKBP1-215ENST00000597649 CCL14Q16627 93 aa20.21■□□□□ 0.83
SHKBP1-215ENST00000597649 LRIT3Q3SXY7 679 aa20.21■□□□□ 0.83
SHKBP1-215ENST00000597649 FOXP4Q8IVH2 680 aaPredicted RBP20.21■□□□□ 0.83
SHKBP1-215ENST00000597649 DEFB123Q8N688 67 aa20.21■□□□□ 0.83
SHKBP1-215ENST00000597649 EMILIN3Q9NT22 766 aa20.21■□□□□ 0.83
SHKBP1-215ENST00000597649 ATAD5Q96QE3 1844 aa20.2■□□□□ 0.82
SHKBP1-215ENST00000597649 C19orf81C9J6K1 198 aa20.2■□□□□ 0.82
SHKBP1-215ENST00000597649 USP17L10C9JJH3 530 aa20.2■□□□□ 0.82
SHKBP1-215ENST00000597649 BAG3O95817 575 aa20.2■□□□□ 0.82
SHKBP1-215ENST00000597649 GNAI2P04899 355 aa20.2■□□□□ 0.82
SHKBP1-215ENST00000597649 CYP2E1P05181 493 aaPredicted RBP20.2■□□□□ 0.82
SHKBP1-215ENST00000597649 CCND3P30281 292 aaPredicted RBP20.2■□□□□ 0.82
SHKBP1-215ENST00000597649 MORN1Q5T089 497 aa20.2■□□□□ 0.82
SHKBP1-215ENST00000597649 FLT1P17948 1338 aa20.2■□□□□ 0.82
SHKBP1-215ENST00000597649 TRIM27P14373 513 aa20.19■□□□□ 0.82
SHKBP1-215ENST00000597649 ERVK-9P63128 1117 aa20.19■□□□□ 0.82
SHKBP1-215ENST00000597649 ERVK-24P63145 666 aa20.19■□□□□ 0.82
SHKBP1-215ENST00000597649 SOCS4Q8WXH5 440 aa20.19■□□□□ 0.82
SHKBP1-215ENST00000597649 DBNDD2Q9BQY9 259 aa20.19■□□□□ 0.82
SHKBP1-215ENST00000597649 SAP30BPQ9UHR5 308 aaKnown RBP20.19■□□□□ 0.82
SHKBP1-215ENST00000597649 ZBTB21Q9ULJ3 1066 aa20.19■□□□□ 0.82
SHKBP1-215ENST00000597649 DDX60LQ5H9U9 1706 aaKnown RBP20.19■□□□□ 0.82
SHKBP1-215ENST00000597649 MAPK4P31152 587 aa20.18■□□□□ 0.82
SHKBP1-215ENST00000597649 DYNLL1P63167 89 aaKnown RBP20.18■□□□□ 0.82
SHKBP1-215ENST00000597649 LRRC26Q2I0M4 334 aa20.18■□□□□ 0.82
SHKBP1-215ENST00000597649 GPR142Q7Z601 462 aa20.18■□□□□ 0.82
SHKBP1-215ENST00000597649 TDHQ8IZJ6 230 aa20.18■□□□□ 0.82
SHKBP1-215ENST00000597649 NOL10Q9BSC4 688 aaKnown RBP20.18■□□□□ 0.82
SHKBP1-215ENST00000597649 PAGR1Q9BTK6 254 aa20.18■□□□□ 0.82
SHKBP1-215ENST00000597649 MTMR10Q9NXD2 777 aa20.18■□□□□ 0.82
SHKBP1-215ENST00000597649 CNMDO75829 334 aa20.17■□□□□ 0.82
SHKBP1-215ENST00000597649 PLCG2P16885 1265 aa20.17■□□□□ 0.82
SHKBP1-215ENST00000597649 ZKSCAN1P17029 563 aaPredicted RBP20.17■□□□□ 0.82
SHKBP1-215ENST00000597649 TNNI3KQ59H18 835 aa20.17■□□□□ 0.82
SHKBP1-215ENST00000597649 CRACR2BQ8N4Y2 399 aaPredicted RBP20.17■□□□□ 0.82
SHKBP1-215ENST00000597649 UBE2OQ9C0C9 1292 aaKnown RBP20.17■□□□□ 0.82
SHKBP1-215ENST00000597649 PIH1D3Q9NQM4 214 aaKnown RBP20.17■□□□□ 0.82
SHKBP1-215ENST00000597649 FPGT-TNNI3KV9GXZ4 949 aa20.17■□□□□ 0.82
SHKBP1-215ENST00000597649 VCANP13611 3396 aa20.16■□□□□ 0.82
SHKBP1-215ENST00000597649 BCAR3O75815 825 aa20.16■□□□□ 0.82
SHKBP1-215ENST00000597649 ZAP70P43403 619 aa20.16■□□□□ 0.82
SHKBP1-215ENST00000597649 PDE3AQ14432 1141 aa20.16■□□□□ 0.82
SHKBP1-215ENST00000597649 TTC39AQ5SRH9 613 aa20.16■□□□□ 0.82
SHKBP1-215ENST00000597649 PLEKHH3Q7Z736 793 aa20.16■□□□□ 0.82
SHKBP1-215ENST00000597649 TRMT44Q8IYL2 757 aaKnown RBP20.16■□□□□ 0.82
SHKBP1-215ENST00000597649 GPR108Q9NPR9 543 aa20.16■□□□□ 0.82
SHKBP1-215ENST00000597649 GINM1Q9NU53 330 aa20.16■□□□□ 0.82
SHKBP1-215ENST00000597649 GH2P01242 217 aa20.15■□□□□ 0.82
SHKBP1-215ENST00000597649 RGS2P41220 211 aa20.15■□□□□ 0.82
SHKBP1-215ENST00000597649 POLA2Q14181 598 aa20.15■□□□□ 0.82
SHKBP1-215ENST00000597649 CLUAP1Q96AJ1 413 aa20.15■□□□□ 0.82
SHKBP1-215ENST00000597649 FLRT1Q9NZU1 646 aa20.15■□□□□ 0.82
SHKBP1-215ENST00000597649 STXBP5LQ9Y2K9 1186 aa20.15■□□□□ 0.82
SHKBP1-215ENST00000597649 NDUFB9Q9Y6M9 179 aa20.15■□□□□ 0.82
SHKBP1-215ENST00000597649 CCDC158Q5M9N0 1113 aa20.14■□□□□ 0.81
SHKBP1-215ENST00000597649 USP17L2Q6R6M4 530 aa20.14■□□□□ 0.81
SHKBP1-215ENST00000597649 ATF7IPQ6VMQ6 1270 aa20.14■□□□□ 0.81
SHKBP1-215ENST00000597649 TRIM34Q9BYJ4 488 aa20.14■□□□□ 0.81
SHKBP1-215ENST00000597649 IPO8O15397 1037 aaKnown RBP20.13■□□□□ 0.81
SHKBP1-215ENST00000597649 MDM2Q00987 491 aaPredicted RBP20.13■□□□□ 0.81
SHKBP1-215ENST00000597649 MAP2K5Q13163 448 aa20.13■□□□□ 0.81
SHKBP1-215ENST00000597649 TATDN1Q6P1N9 297 aa20.13■□□□□ 0.81
SHKBP1-215ENST00000597649 CCAR1Q8IX12 1150 aaKnown RBP20.13■□□□□ 0.81
SHKBP1-215ENST00000597649 FRAT1Q92837 279 aaPredicted RBP20.13■□□□□ 0.81
SHKBP1-215ENST00000597649 ZNF512BQ96KM6 892 aaPredicted RBP20.13■□□□□ 0.81
SHKBP1-215ENST00000597649 APBA2Q99767 749 aa20.13■□□□□ 0.81
SHKBP1-215ENST00000597649 EYSQ5T1H1 3165 aa20.13■□□□□ 0.81
SHKBP1-215ENST00000597649 CYP7A1P22680 504 aa20.12■□□□□ 0.81
SHKBP1-215ENST00000597649 ATP8B2P98198 1209 aa20.12■□□□□ 0.81
SHKBP1-215ENST00000597649 ZYXQ15942 572 aaKnown RBP20.12■□□□□ 0.81
SHKBP1-215ENST00000597649 ACER1Q8TDN7 264 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms