RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 CPA4Q9UI42 421 aa11.35□□□□□ -0.59
TRIM28-208ENST00000597172 RFX7Q2KHR2 1363 aa11.35□□□□□ -0.59
TRIM28-208ENST00000597172 ZNF532Q9HCE3 1301 aa11.35□□□□□ -0.59
TRIM28-208ENST00000597172 SGSM2O43147 1006 aa11.34□□□□□ -0.59
TRIM28-208ENST00000597172 ADCY3O60266 1144 aa11.34□□□□□ -0.59
TRIM28-208ENST00000597172 INHAP05111 366 aa11.34□□□□□ -0.59
TRIM28-208ENST00000597172 LDHBP07195 334 aaKnown RBP11.34□□□□□ -0.59
TRIM28-208ENST00000597172 ZFYP08048 801 aaPredicted RBP11.34□□□□□ -0.59
TRIM28-208ENST00000597172 CETPP11597 493 aa11.34□□□□□ -0.59
TRIM28-208ENST00000597172 MDM2Q00987 491 aaPredicted RBP11.34□□□□□ -0.59
TRIM28-208ENST00000597172 UBE3CQ15386 1083 aa11.34□□□□□ -0.59
TRIM28-208ENST00000597172 ZSCAN25Q6NSZ9 544 aa11.34□□□□□ -0.59
TRIM28-208ENST00000597172 ADGRA1Q86SQ6 560 aa11.34□□□□□ -0.59
TRIM28-208ENST00000597172 KIAA0825Q8IV33 1275 aa11.34□□□□□ -0.59
TRIM28-208ENST00000597172 NBPF3Q9H094 633 aa11.34□□□□□ -0.59
TRIM28-208ENST00000597172 PUS7LQ9H0K6 701 aaKnown RBP11.34□□□□□ -0.59
TRIM28-208ENST00000597172 PAK6Q9NQU5 681 aaPredicted RBP11.34□□□□□ -0.59
TRIM28-208ENST00000597172 HELLSQ9NRZ9 838 aa11.34□□□□□ -0.59
TRIM28-208ENST00000597172 DIAPH3Q9NSV4 1193 aa11.34□□□□□ -0.59
TRIM28-208ENST00000597172 ADGRA2Q96PE1 1338 aa11.34□□□□□ -0.59
TRIM28-208ENST00000597172 M0R2C6 588 aa11.33□□□□□ -0.6
TRIM28-208ENST00000597172 IGSF3O75054 1194 aa11.33□□□□□ -0.6
TRIM28-208ENST00000597172 CYP7A1P22680 504 aa11.33□□□□□ -0.6
TRIM28-208ENST00000597172 DLGAP5Q15398 846 aa11.33□□□□□ -0.6
TRIM28-208ENST00000597172 LRRFIP1Q32MZ4 808 aaKnown RBP11.33□□□□□ -0.6
TRIM28-208ENST00000597172 MCMDC2Q4G0Z9 681 aa11.33□□□□□ -0.6
TRIM28-208ENST00000597172 CASC1Q6TDU7 716 aa11.33□□□□□ -0.6
TRIM28-208ENST00000597172 PPP1R3FQ6ZSY5 799 aaPredicted RBP11.33□□□□□ -0.6
TRIM28-208ENST00000597172 ZNF589Q86UQ0 364 aaPredicted RBP11.33□□□□□ -0.6
TRIM28-208ENST00000597172 ANKLE1Q8NAG6 615 aa11.33□□□□□ -0.6
TRIM28-208ENST00000597172 APPBP2Q92624 585 aa11.33□□□□□ -0.6
TRIM28-208ENST00000597172 SUGT1Q9Y2Z0 365 aa11.33□□□□□ -0.6
TRIM28-208ENST00000597172 MYO5AQ9Y4I1 1855 aaKnown RBP11.33□□□□□ -0.6
TRIM28-208ENST00000597172 COL2A1P02458 1487 aaPredicted RBP11.32□□□□□ -0.6
TRIM28-208ENST00000597172 ZDBF2Q9HCK1 2354 aa11.32□□□□□ -0.6
TRIM28-208ENST00000597172 F8W031 263 aaPredicted RBP11.32□□□□□ -0.6
TRIM28-208ENST00000597172 ELNP15502 786 aa11.32□□□□□ -0.6
TRIM28-208ENST00000597172 MAP3K9P80192 1104 aa11.32□□□□□ -0.6
TRIM28-208ENST00000597172 DIXDC1Q155Q3 683 aa11.32□□□□□ -0.6
TRIM28-208ENST00000597172 NAA16Q6N069 864 aaPredicted RBP11.32□□□□□ -0.6
TRIM28-208ENST00000597172 CCDC129Q6ZRS4 1044 aa11.32□□□□□ -0.6
TRIM28-208ENST00000597172 RUFY2Q8WXA3 655 aa11.32□□□□□ -0.6
TRIM28-208ENST00000597172 FAM163AQ96GL9 167 aaPredicted RBP11.32□□□□□ -0.6
TRIM28-208ENST00000597172 GABRQQ9UN88 632 aa11.32□□□□□ -0.6
TRIM28-208ENST00000597172 MAST3O60307 1309 aa11.32□□□□□ -0.6
TRIM28-208ENST00000597172 DOCK2Q92608 1830 aa11.31□□□□□ -0.6
TRIM28-208ENST00000597172 CLRN2A0PK11 232 aa11.31□□□□□ -0.6
TRIM28-208ENST00000597172 FCGRTP55899 365 aa11.31□□□□□ -0.6
TRIM28-208ENST00000597172 VGLL4Q14135 290 aa11.31□□□□□ -0.6
TRIM28-208ENST00000597172 TMED8Q6PL24 325 aaPredicted RBP11.31□□□□□ -0.6
TRIM28-208ENST00000597172 DZIP1Q86YF9 867 aaKnown RBP11.31□□□□□ -0.6
TRIM28-208ENST00000597172 USP38Q8NB14 1042 aa11.31□□□□□ -0.6
TRIM28-208ENST00000597172 ADAMTS19Q8TE59 1207 aa11.31□□□□□ -0.6
TRIM28-208ENST00000597172 STRBPQ96SI9 672 aaKnown RBP11.31□□□□□ -0.6
TRIM28-208ENST00000597172 UHRF1Q96T88 793 aaPredicted RBP11.31□□□□□ -0.6
TRIM28-208ENST00000597172 RIOK1Q9BRS2 568 aaKnown RBP11.31□□□□□ -0.6
TRIM28-208ENST00000597172 MRIQ9BWK5 157 aa11.31□□□□□ -0.6
TRIM28-208ENST00000597172 USP26Q9BXU7 913 aa11.31□□□□□ -0.6
TRIM28-208ENST00000597172 LSG1Q9H089 658 aaKnown RBP11.31□□□□□ -0.6
TRIM28-208ENST00000597172 C11orf49Q9H6J7 331 aa11.31□□□□□ -0.6
TRIM28-208ENST00000597172 VEZTQ9HBM0 779 aa11.31□□□□□ -0.6
TRIM28-208ENST00000597172 TTF2Q9UNY4 1162 aaKnown RBP11.31□□□□□ -0.6
TRIM28-208ENST00000597172 FOXP2O15409 715 aa11.3□□□□□ -0.6
TRIM28-208ENST00000597172 MYO1BO43795 1136 aa11.3□□□□□ -0.6
TRIM28-208ENST00000597172 MFAP1P55081 439 aaKnown RBP11.3□□□□□ -0.6
TRIM28-208ENST00000597172 DYNLL1P63167 89 aaKnown RBP11.3□□□□□ -0.6
TRIM28-208ENST00000597172 GSTO1P78417 241 aa11.3□□□□□ -0.6
TRIM28-208ENST00000597172 PTH1RQ03431 593 aa11.3□□□□□ -0.6
TRIM28-208ENST00000597172 SNAPC2Q13487 334 aa11.3□□□□□ -0.6
TRIM28-208ENST00000597172 RASA3Q14644 834 aa11.3□□□□□ -0.6
TRIM28-208ENST00000597172 MIGA1Q8NAN2 632 aa11.3□□□□□ -0.6
TRIM28-208ENST00000597172 PXYLP1Q8TE99 480 aa11.3□□□□□ -0.6
TRIM28-208ENST00000597172 TTYH1Q9H313 450 aaPredicted RBP11.3□□□□□ -0.6
TRIM28-208ENST00000597172 CSADQ9Y600 493 aa11.3□□□□□ -0.6
TRIM28-208ENST00000597172 AK9Q5TCS8 1911 aa11.3□□□□□ -0.6
TRIM28-208ENST00000597172 MYH13Q9UKX3 1938 aa11.3□□□□□ -0.6
TRIM28-208ENST00000597172 GAKO14976 1311 aa11.3□□□□□ -0.6
TRIM28-208ENST00000597172 RAD50Q92878 1312 aa11.3□□□□□ -0.6
TRIM28-208ENST00000597172 GPR75-ASB3A0A0A6YYF3 556 aa11.29□□□□□ -0.6
TRIM28-208ENST00000597172 GPAA1O43292 621 aa11.29□□□□□ -0.6
TRIM28-208ENST00000597172 MBD4O95243 580 aa11.29□□□□□ -0.6
TRIM28-208ENST00000597172 LDHCP07864 332 aa11.29□□□□□ -0.6
TRIM28-208ENST00000597172 FLT3LGP49771 235 aa11.29□□□□□ -0.6
TRIM28-208ENST00000597172 PPP4CP60510 307 aa11.29□□□□□ -0.6
TRIM28-208ENST00000597172 HDLBPQ00341 1268 aaKnown RBP11.29□□□□□ -0.6
TRIM28-208ENST00000597172 VPS53Q5VIR6 699 aa11.29□□□□□ -0.6
TRIM28-208ENST00000597172 APOBEC3HQ6NTF7 200 aaKnown RBP11.29□□□□□ -0.6
TRIM28-208ENST00000597172 HHIPL2Q6UWX4 724 aa11.29□□□□□ -0.6
TRIM28-208ENST00000597172 LCORLQ8N3X6 602 aa11.29□□□□□ -0.6
TRIM28-208ENST00000597172 MTMR14Q8NCE2 650 aa11.29□□□□□ -0.6
TRIM28-208ENST00000597172 ATXN2LQ8WWM7 1075 aaKnown RBP11.29□□□□□ -0.6
TRIM28-208ENST00000597172 LRFN3Q9BTN0 628 aa11.29□□□□□ -0.6
TRIM28-208ENST00000597172 ARMT1Q9H993 441 aa11.29□□□□□ -0.6
TRIM28-208ENST00000597172 DAGLAQ9Y4D2 1042 aa11.29□□□□□ -0.6
TRIM28-208ENST00000597172 PCDHAC2Q9Y5I4 1007 aa11.29□□□□□ -0.6
TRIM28-208ENST00000597172 MROH7-TTC4A0A0A0MT08 1334 aa11.29□□□□□ -0.6
TRIM28-208ENST00000597172 CCDC171Q6TFL3 1326 aa11.29□□□□□ -0.6
TRIM28-208ENST00000597172 OTOFQ9HC10 1997 aa11.28□□□□□ -0.6
TRIM28-208ENST00000597172 MAGEB6P1A0A0J9YX57 407 aa11.28□□□□□ -0.6
TRIM28-208ENST00000597172 SPDYE5A6NIY4 337 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms