RNA–Protein interactions for RNA: ENST00000595758.5

LIG1-208, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 606 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-208ENST00000595758 CDK8P49336 464 aa17.12■□□□□ 0.33
LIG1-208ENST00000595758 GTF2A2P52657 109 aa17.12■□□□□ 0.33
LIG1-208ENST00000595758 INHBEP58166 350 aa17.12■□□□□ 0.33
LIG1-208ENST00000595758 JAG1P78504 1218 aa17.12■□□□□ 0.33
LIG1-208ENST00000595758 SREBF2Q12772 1141 aa17.12■□□□□ 0.33
LIG1-208ENST00000595758 C16orf86Q6ZW13 317 aa17.12■□□□□ 0.33
LIG1-208ENST00000595758 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.12■□□□□ 0.33
LIG1-208ENST00000595758 RAD50Q92878 1312 aa17.12■□□□□ 0.33
LIG1-208ENST00000595758 USP17L5A8MUK1 530 aa17.11■□□□□ 0.33
LIG1-208ENST00000595758 CXCL11O14625 94 aa17.11■□□□□ 0.33
LIG1-208ENST00000595758 GH2P01242 217 aa17.11■□□□□ 0.33
LIG1-208ENST00000595758 SLC3A2P08195 630 aaKnown RBP17.11■□□□□ 0.33
LIG1-208ENST00000595758 TM4SF4P48230 202 aa17.11■□□□□ 0.33
LIG1-208ENST00000595758 PPARAQ07869 468 aa17.11■□□□□ 0.33
LIG1-208ENST00000595758 SNAPC2Q13487 334 aa17.11■□□□□ 0.33
LIG1-208ENST00000595758 ABCB5Q2M3G0 1257 aa17.11■□□□□ 0.33
LIG1-208ENST00000595758 SHROOM1Q2M3G4 852 aaPredicted RBP17.11■□□□□ 0.33
LIG1-208ENST00000595758 CCDC84Q86UT8 332 aaPredicted RBP17.11■□□□□ 0.33
LIG1-208ENST00000595758 STK11IPQ8N1F8 1099 aa17.11■□□□□ 0.33
LIG1-208ENST00000595758 BEGAINQ9BUH8 593 aa17.11■□□□□ 0.33
LIG1-208ENST00000595758 CABP5Q9NP86 173 aa17.11■□□□□ 0.33
LIG1-208ENST00000595758 WBP1LQ9NX94 342 aa17.11■□□□□ 0.33
LIG1-208ENST00000595758 ZBTB21Q9ULJ3 1066 aa17.11■□□□□ 0.33
LIG1-208ENST00000595758 THSD7BQ9C0I4 1608 aa17.1■□□□□ 0.33
LIG1-208ENST00000595758 CETPP11597 493 aa17.1■□□□□ 0.33
LIG1-208ENST00000595758 MS4A4AQ96JQ5 239 aa17.1■□□□□ 0.33
LIG1-208ENST00000595758 IL25Q9H293 177 aa17.1■□□□□ 0.33
LIG1-208ENST00000595758 MKNK2Q9HBH9 465 aa17.1■□□□□ 0.33
LIG1-208ENST00000595758 ZNF287Q9HBT7 754 aa17.1■□□□□ 0.33
LIG1-208ENST00000595758 KCNH4Q9UQ05 1017 aa17.1■□□□□ 0.33
LIG1-208ENST00000595758 AFG3L2Q9Y4W6 797 aa17.1■□□□□ 0.33
LIG1-208ENST00000595758 CCL15-CCL14A0A0B4J2E2 113 aa17.09■□□□□ 0.33
LIG1-208ENST00000595758 TESPA1A2RU30 521 aaPredicted RBP17.09■□□□□ 0.33
LIG1-208ENST00000595758 MPHOSPH10O00566 681 aaKnown RBP17.09■□□□□ 0.33
LIG1-208ENST00000595758 SGSM2O43147 1006 aa17.09■□□□□ 0.33
LIG1-208ENST00000595758 CCL15Q16663 113 aa17.09■□□□□ 0.33
LIG1-208ENST00000595758 ZNF280CQ8ND82 737 aa17.09■□□□□ 0.33
LIG1-208ENST00000595758 CCDC17Q96LX7 622 aa17.09■□□□□ 0.33
LIG1-208ENST00000595758 DSCC1Q9BVC3 393 aa17.09■□□□□ 0.33
LIG1-208ENST00000595758 TBC1D2Q9BYX2 928 aa17.09■□□□□ 0.33
LIG1-208ENST00000595758 AS3MTQ9HBK9 375 aa17.09■□□□□ 0.33
LIG1-208ENST00000595758 ZMYM6O95789 1325 aa17.09■□□□□ 0.33
LIG1-208ENST00000595758 ROBO3Q96MS0 1386 aa17.09■□□□□ 0.33
LIG1-208ENST00000595758 DOCK1Q14185 1865 aa17.09■□□□□ 0.33
LIG1-208ENST00000595758 TRIM75PA6NK02 468 aa17.08■□□□□ 0.32
LIG1-208ENST00000595758 CDC45O75419 566 aa17.08■□□□□ 0.32
LIG1-208ENST00000595758 AKR1B1P15121 316 aa17.08■□□□□ 0.32
LIG1-208ENST00000595758 PDE4BQ07343 736 aa17.08■□□□□ 0.32
LIG1-208ENST00000595758 SPP2Q13103 211 aa17.08■□□□□ 0.32
LIG1-208ENST00000595758 RAB3GAP1Q15042 981 aa17.08■□□□□ 0.32
LIG1-208ENST00000595758 CASC1Q6TDU7 716 aa17.08■□□□□ 0.32
LIG1-208ENST00000595758 BRI3BPQ8WY22 251 aa17.08■□□□□ 0.32
LIG1-208ENST00000595758 WDR18Q9BV38 432 aa17.08■□□□□ 0.32
LIG1-208ENST00000595758 ANAPC4Q9UJX5 808 aa17.08■□□□□ 0.32
LIG1-208ENST00000595758 PRDM1O75626 825 aa17.07■□□□□ 0.32
LIG1-208ENST00000595758 HSPA1AP0DMV8 641 aaKnown RBP17.07■□□□□ 0.32
LIG1-208ENST00000595758 HSPA1BP0DMV9 641 aaKnown RBP17.07■□□□□ 0.32
LIG1-208ENST00000595758 CTDSPL2Q05D32 466 aa17.07■□□□□ 0.32
LIG1-208ENST00000595758 SEPT2Q15019 361 aa17.07■□□□□ 0.32
LIG1-208ENST00000595758 OTUD7BQ6GQQ9 843 aa17.07■□□□□ 0.32
LIG1-208ENST00000595758 TMEM179Q6ZVK1 233 aa17.07■□□□□ 0.32
LIG1-208ENST00000595758 IFNL1Q8IU54 200 aa17.07■□□□□ 0.32
LIG1-208ENST00000595758 ZNF444Q8N0Y2 327 aaPredicted RBP17.07■□□□□ 0.32
LIG1-208ENST00000595758 PTPN18Q99952 460 aa17.07■□□□□ 0.32
LIG1-208ENST00000595758 ESYT1Q9BSJ8 1104 aa17.07■□□□□ 0.32
LIG1-208ENST00000595758 CTNNA3Q9UI47 895 aa17.07■□□□□ 0.32
LIG1-208ENST00000595758 A0A0G2JLL6 359 aaPredicted RBP17.06■□□□□ 0.32
LIG1-208ENST00000595758 IGF2BP3O00425 579 aaKnown RBP eCLIP17.06■□□□□ 0.32
LIG1-208ENST00000595758 CA12O43570 354 aa17.06■□□□□ 0.32
LIG1-208ENST00000595758 RASA1P20936 1047 aa17.06■□□□□ 0.32
LIG1-208ENST00000595758 GUCY1A2P33402 732 aa17.06■□□□□ 0.32
LIG1-208ENST00000595758 HAND2P61296 217 aa17.06■□□□□ 0.32
LIG1-208ENST00000595758 KIAA1211Q6ZU35 1233 aa17.06■□□□□ 0.32
LIG1-208ENST00000595758 FASTKD5Q7L8L6 764 aaKnown RBP17.06■□□□□ 0.32
LIG1-208ENST00000595758 PRRT2Q7Z6L0 340 aaPredicted RBP17.06■□□□□ 0.32
LIG1-208ENST00000595758 RNF186Q9NXI6 227 aa17.06■□□□□ 0.32
LIG1-208ENST00000595758 ZNF213O14771 459 aa17.05■□□□□ 0.32
LIG1-208ENST00000595758 TRPA1O75762 1119 aa17.05■□□□□ 0.32
LIG1-208ENST00000595758 ALDH1A1P00352 501 aa17.05■□□□□ 0.32
LIG1-208ENST00000595758 PTH1RQ03431 593 aa17.05■□□□□ 0.32
LIG1-208ENST00000595758 ATAD5Q96QE3 1844 aa17.05■□□□□ 0.32
LIG1-208ENST00000595758 BTBD19C9JJ37 291 aa17.04■□□□□ 0.32
LIG1-208ENST00000595758 USP17L10C9JJH3 530 aa17.04■□□□□ 0.32
LIG1-208ENST00000595758 BACE1P56817 501 aa17.04■□□□□ 0.32
LIG1-208ENST00000595758 MTMR2Q13614 643 aa17.04■□□□□ 0.32
LIG1-208ENST00000595758 MOGSQ13724 837 aa17.04■□□□□ 0.32
LIG1-208ENST00000595758 IMMTQ16891 758 aaKnown RBP17.04■□□□□ 0.32
LIG1-208ENST00000595758 GADL1Q6ZQY3 521 aa17.04■□□□□ 0.32
LIG1-208ENST00000595758 INCENPQ9NQS7 918 aa17.04■□□□□ 0.32
LIG1-208ENST00000595758 SAGE1Q9NXZ1 904 aa17.04■□□□□ 0.32
LIG1-208ENST00000595758 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.04■□□□□ 0.32
LIG1-208ENST00000595758 U3KPZ7 1027 aaPredicted RBP17.04■□□□□ 0.32
LIG1-208ENST00000595758 LAMB1P07942 1786 aa17.04■□□□□ 0.32
LIG1-208ENST00000595758 C19orf81C9J6K1 198 aa17.03■□□□□ 0.32
LIG1-208ENST00000595758 FOXN1O15353 648 aa17.03■□□□□ 0.32
LIG1-208ENST00000595758 FGRP09769 529 aa17.03■□□□□ 0.32
LIG1-208ENST00000595758 HMGCS2P54868 508 aa17.03■□□□□ 0.32
LIG1-208ENST00000595758 ANKRD23Q86SG2 305 aa17.03■□□□□ 0.32
LIG1-208ENST00000595758 FAM43AQ8N2R8 423 aa17.03■□□□□ 0.32
LIG1-208ENST00000595758 ACER1Q8TDN7 264 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms