RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 FAM110CQ1W6H9 321 aa15.24■□□□□ 0.03
UPF1-203ENST00000594504 RPAP2Q8IXW5 612 aaPredicted RBP15.24■□□□□ 0.03
UPF1-203ENST00000594504 MIGA1Q8NAN2 632 aa15.24■□□□□ 0.03
UPF1-203ENST00000594504 PXYLP1Q8TE99 480 aa15.24■□□□□ 0.03
UPF1-203ENST00000594504 COA7Q96BR5 231 aa15.24■□□□□ 0.03
UPF1-203ENST00000594504 P2RX7Q99572 595 aaKnown RBP15.24■□□□□ 0.03
UPF1-203ENST00000594504 EXOC6BQ9Y2D4 811 aa15.24■□□□□ 0.03
UPF1-203ENST00000594504 MAST2Q6P0Q8 1798 aa15.24■□□□□ 0.03
UPF1-203ENST00000594504 FOCADQ5VW36 1801 aa15.23■□□□□ 0.03
UPF1-203ENST00000594504 IDH1O75874 414 aaKnown RBP15.23■□□□□ 0.03
UPF1-203ENST00000594504 TFRCP02786 760 aaKnown RBP15.23■□□□□ 0.03
UPF1-203ENST00000594504 TRIM32Q13049 653 aa15.23■□□□□ 0.03
UPF1-203ENST00000594504 CRACR2BQ8N4Y2 399 aaPredicted RBP15.23■□□□□ 0.03
UPF1-203ENST00000594504 DEFB118Q96PH6 123 aa15.23■□□□□ 0.03
UPF1-203ENST00000594504 WDR18Q9BV38 432 aa15.23■□□□□ 0.03
UPF1-203ENST00000594504 TBC1D2Q9BYX2 928 aa15.23■□□□□ 0.03
UPF1-203ENST00000594504 GJD2Q9UKL4 321 aa15.23■□□□□ 0.03
UPF1-203ENST00000594504 HMMRO75330 724 aa15.22■□□□□ 0.03
UPF1-203ENST00000594504 GCLCP48506 637 aaPredicted RBP15.22■□□□□ 0.03
UPF1-203ENST00000594504 BACE1P56817 501 aa15.22■□□□□ 0.03
UPF1-203ENST00000594504 PABPC4Q13310 644 aaKnown RBP eCLIP15.22■□□□□ 0.03
UPF1-203ENST00000594504 CHRDL2Q6WN34 429 aa15.22■□□□□ 0.03
UPF1-203ENST00000594504 METTL16Q86W50 562 aaKnown RBP15.22■□□□□ 0.03
UPF1-203ENST00000594504 MAGEB6Q8N7X4 407 aa15.22■□□□□ 0.03
UPF1-203ENST00000594504 TRIM34Q9BYJ4 488 aa15.22■□□□□ 0.03
UPF1-203ENST00000594504 MYH1P12882 1939 aa15.21■□□□□ 0.03
UPF1-203ENST00000594504 FARP2O94887 1054 aaPredicted RBP15.21■□□□□ 0.03
UPF1-203ENST00000594504 ASNSP08243 561 aa15.21■□□□□ 0.03
UPF1-203ENST00000594504 Q3C1V9 767 aa15.21■□□□□ 0.03
UPF1-203ENST00000594504 AACSQ86V21 672 aa15.21■□□□□ 0.03
UPF1-203ENST00000594504 BCL11AQ9H165 835 aa15.21■□□□□ 0.03
UPF1-203ENST00000594504 TXNRD2Q9NNW7 524 aa15.21■□□□□ 0.03
UPF1-203ENST00000594504 IL1RAPL2Q9NP60 686 aa15.21■□□□□ 0.03
UPF1-203ENST00000594504 TMOD4Q9NZQ9 345 aa15.21■□□□□ 0.03
UPF1-203ENST00000594504 ZBTB21Q9ULJ3 1066 aa15.21■□□□□ 0.03
UPF1-203ENST00000594504 PLXNB2O15031 1838 aa15.2■□□□□ 0.02
UPF1-203ENST00000594504 USP17L10C9JJH3 530 aa15.2■□□□□ 0.02
UPF1-203ENST00000594504 HLA-DOAP06340 250 aa15.2■□□□□ 0.02
UPF1-203ENST00000594504 CYP2B6P20813 491 aa15.2■□□□□ 0.02
UPF1-203ENST00000594504 USP5P45974 858 aa15.2■□□□□ 0.02
UPF1-203ENST00000594504 IRX3P78415 501 aaPredicted RBP15.2■□□□□ 0.02
UPF1-203ENST00000594504 POTEEQ6S8J3 1075 aa15.2■□□□□ 0.02
UPF1-203ENST00000594504 HTATIP2Q9BUP3 242 aa15.2■□□□□ 0.02
UPF1-203ENST00000594504 PAK6Q9NQU5 681 aaPredicted RBP15.2■□□□□ 0.02
UPF1-203ENST00000594504 EMILIN3Q9NT22 766 aa15.2■□□□□ 0.02
UPF1-203ENST00000594504 RBM27Q9P2N5 1060 aaKnown RBP15.2■□□□□ 0.02
UPF1-203ENST00000594504 C19orf81C9J6K1 198 aa15.19■□□□□ 0.02
UPF1-203ENST00000594504 APBB1O00213 710 aa15.19■□□□□ 0.02
UPF1-203ENST00000594504 GH2P01242 217 aa15.19■□□□□ 0.02
UPF1-203ENST00000594504 HOXA7P31268 230 aaPredicted RBP15.19■□□□□ 0.02
UPF1-203ENST00000594504 ZYXQ15942 572 aaKnown RBP15.19■□□□□ 0.02
UPF1-203ENST00000594504 HSP90AB4PQ58FF6 505 aa15.19■□□□□ 0.02
UPF1-203ENST00000594504 SIRT2Q8IXJ6 389 aa15.19■□□□□ 0.02
UPF1-203ENST00000594504 DIS3LQ8TF46 1054 aaKnown RBP15.19■□□□□ 0.02
UPF1-203ENST00000594504 RBPJLQ9UBG7 517 aa15.19■□□□□ 0.02
UPF1-203ENST00000594504 MORF4L1Q9UBU8 362 aa15.19■□□□□ 0.02
UPF1-203ENST00000594504 HERVK_113P62684 666 aa15.18■□□□□ 0.02
UPF1-203ENST00000594504 EVX2Q03828 476 aa15.18■□□□□ 0.02
UPF1-203ENST00000594504 ERC1Q8IUD2 1116 aa15.18■□□□□ 0.02
UPF1-203ENST00000594504 RHPN1Q8TCX5 695 aa15.18■□□□□ 0.02
UPF1-203ENST00000594504 PAWRQ96IZ0 340 aaKnown RBP15.18■□□□□ 0.02
UPF1-203ENST00000594504 CRBNQ96SW2 442 aa15.18■□□□□ 0.02
UPF1-203ENST00000594504 CRISPLD2Q9H0B8 497 aa15.18■□□□□ 0.02
UPF1-203ENST00000594504 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.18■□□□□ 0.02
UPF1-203ENST00000594504 PLCD1P51178 756 aa15.17■□□□□ 0.02
UPF1-203ENST00000594504 MAP3K12Q12852 859 aa15.17■□□□□ 0.02
UPF1-203ENST00000594504 TATDN1Q6P1N9 297 aa15.17■□□□□ 0.02
UPF1-203ENST00000594504 GPRC5AQ8NFJ5 357 aa15.17■□□□□ 0.02
UPF1-203ENST00000594504 TRIB2Q92519 343 aa15.17■□□□□ 0.02
UPF1-203ENST00000594504 PAGR1Q9BTK6 254 aa15.17■□□□□ 0.02
UPF1-203ENST00000594504 SUPT16HQ9Y5B9 1047 aaKnown RBP15.17■□□□□ 0.02
UPF1-203ENST00000594504 IGSF3O75054 1194 aa15.16■□□□□ 0.02
UPF1-203ENST00000594504 HMGCRP04035 888 aa15.16■□□□□ 0.02
UPF1-203ENST00000594504 RAB3GAP1Q15042 981 aa15.16■□□□□ 0.02
UPF1-203ENST00000594504 USP17L2Q6R6M4 530 aa15.16■□□□□ 0.02
UPF1-203ENST00000594504 ACER1Q8TDN7 264 aa15.16■□□□□ 0.02
UPF1-203ENST00000594504 RIOK1Q9BRS2 568 aaKnown RBP15.16■□□□□ 0.02
UPF1-203ENST00000594504 PORCNQ9H237 461 aa15.16■□□□□ 0.02
UPF1-203ENST00000594504 HMX1Q9NP08 348 aaPredicted RBP15.16■□□□□ 0.02
UPF1-203ENST00000594504 GINM1Q9NU53 330 aa15.16■□□□□ 0.02
UPF1-203ENST00000594504 RPTORQ8N122 1335 aa15.16■□□□□ 0.02
UPF1-203ENST00000594504 EVI5O60447 810 aa15.15■□□□□ 0.02
UPF1-203ENST00000594504 AAMPQ13685 434 aa15.15■□□□□ 0.02
UPF1-203ENST00000594504 SLFNL1Q499Z3 407 aa15.15■□□□□ 0.02
UPF1-203ENST00000594504 CERKLQ49MI3 558 aaPredicted RBP15.15■□□□□ 0.02
UPF1-203ENST00000594504 TTC6Q86TZ1 520 aa15.15■□□□□ 0.02
UPF1-203ENST00000594504 EDC3Q96F86 508 aaKnown RBP15.15■□□□□ 0.02
UPF1-203ENST00000594504 NUDT12Q9BQG2 462 aa15.15■□□□□ 0.02
UPF1-203ENST00000594504 SERPINB13Q9UIV8 391 aa15.15■□□□□ 0.02
UPF1-203ENST00000594504 NR2E3Q9Y5X4 410 aa15.15■□□□□ 0.02
UPF1-203ENST00000594504 ALPK3Q96L96 1907 aa15.15■□□□□ 0.02
UPF1-203ENST00000594504 MAGEB6P1A0A0J9YX57 407 aa15.14■□□□□ 0.01
UPF1-203ENST00000594504 RAB11FIP3O75154 756 aa15.14■□□□□ 0.01
UPF1-203ENST00000594504 CNMDO75829 334 aa15.14■□□□□ 0.01
UPF1-203ENST00000594504 POLR3DP05423 398 aaPredicted RBP15.14■□□□□ 0.01
UPF1-203ENST00000594504 GUCY1A2P33402 732 aa15.14■□□□□ 0.01
UPF1-203ENST00000594504 SHMT1P34896 483 aa15.14■□□□□ 0.01
UPF1-203ENST00000594504 ERVK-9P63128 1117 aa15.14■□□□□ 0.01
UPF1-203ENST00000594504 ERVK-24P63145 666 aa15.14■□□□□ 0.01
UPF1-203ENST00000594504 CCL14Q16627 93 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms