RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 SNRKQ9NRH2 765 aa13.72□□□□□ -0.21
SMAD4-211ENST00000590499 USP40Q9NVE5 1235 aa13.72□□□□□ -0.21
SMAD4-211ENST00000590499 BTDP43251 543 aa13.71□□□□□ -0.21
SMAD4-211ENST00000590499 ZAP70P43403 619 aa13.71□□□□□ -0.21
SMAD4-211ENST00000590499 IREB2P48200 963 aaKnown RBP13.71□□□□□ -0.21
SMAD4-211ENST00000590499 LBX1P52954 281 aa13.71□□□□□ -0.21
SMAD4-211ENST00000590499 RHBDL3P58872 404 aa13.71□□□□□ -0.21
SMAD4-211ENST00000590499 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.71□□□□□ -0.21
SMAD4-211ENST00000590499 FAM151AQ8WW52 585 aa13.71□□□□□ -0.21
SMAD4-211ENST00000590499 BEGAINQ9BUH8 593 aa13.71□□□□□ -0.21
SMAD4-211ENST00000590499 ATRNL1Q5VV63 1379 aa13.71□□□□□ -0.22
SMAD4-211ENST00000590499 FOCADQ5VW36 1801 aa13.7□□□□□ -0.22
SMAD4-211ENST00000590499 IGSF3O75054 1194 aa13.7□□□□□ -0.22
SMAD4-211ENST00000590499 WDHD1O75717 1129 aaPredicted RBP13.7□□□□□ -0.22
SMAD4-211ENST00000590499 GSTO1P78417 241 aa13.7□□□□□ -0.22
SMAD4-211ENST00000590499 SPRYD7Q5W111 196 aa13.7□□□□□ -0.22
SMAD4-211ENST00000590499 PADI6Q6TGC4 694 aa13.7□□□□□ -0.22
SMAD4-211ENST00000590499 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.7□□□□□ -0.22
SMAD4-211ENST00000590499 NUDT18Q6ZVK8 323 aa13.7□□□□□ -0.22
SMAD4-211ENST00000590499 ANKRD13AQ8IZ07 590 aa13.7□□□□□ -0.22
SMAD4-211ENST00000590499 CLASRPQ8N2M8 674 aaKnown RBP13.7□□□□□ -0.22
SMAD4-211ENST00000590499 TTC13Q8NBP0 860 aa13.7□□□□□ -0.22
SMAD4-211ENST00000590499 PIH1D3Q9NQM4 214 aaKnown RBP13.7□□□□□ -0.22
SMAD4-211ENST00000590499 RAI14Q9P0K7 980 aa13.7□□□□□ -0.22
SMAD4-211ENST00000590499 CASP8AP2Q9UKL3 1982 aa13.7□□□□□ -0.22
SMAD4-211ENST00000590499 APBB1O00213 710 aa13.69□□□□□ -0.22
SMAD4-211ENST00000590499 ENTPD3O75355 529 aa13.69□□□□□ -0.22
SMAD4-211ENST00000590499 ZBTB48P10074 688 aaPredicted RBP13.69□□□□□ -0.22
SMAD4-211ENST00000590499 GJA5P36382 358 aa13.69□□□□□ -0.22
SMAD4-211ENST00000590499 RGS3P49796 1198 aa13.69□□□□□ -0.22
SMAD4-211ENST00000590499 TCP10Q12799 353 aa13.69□□□□□ -0.22
SMAD4-211ENST00000590499 ZFPM1Q8IX07 1006 aa13.69□□□□□ -0.22
SMAD4-211ENST00000590499 NKX2-3Q8TAU0 364 aa13.69□□□□□ -0.22
SMAD4-211ENST00000590499 WNK4Q96J92 1243 aa13.69□□□□□ -0.22
SMAD4-211ENST00000590499 DDX4Q9NQI0 724 aaKnown RBP13.69□□□□□ -0.22
SMAD4-211ENST00000590499 SAGE1Q9NXZ1 904 aa13.69□□□□□ -0.22
SMAD4-211ENST00000590499 LRP2BPQ9P2M1 347 aa13.69□□□□□ -0.22
SMAD4-211ENST00000590499 PCDHB15Q9Y5E8 787 aa13.69□□□□□ -0.22
SMAD4-211ENST00000590499 MAP4K4O95819 1239 aaPredicted RBP13.68□□□□□ -0.22
SMAD4-211ENST00000590499 LDHCP07864 332 aa13.68□□□□□ -0.22
SMAD4-211ENST00000590499 TM4SF4P48230 202 aa13.68□□□□□ -0.22
SMAD4-211ENST00000590499 VGLL4Q14135 290 aa13.68□□□□□ -0.22
SMAD4-211ENST00000590499 SH3BP5LQ7L8J4 393 aa13.68□□□□□ -0.22
SMAD4-211ENST00000590499 ADGRA1Q86SQ6 560 aa13.68□□□□□ -0.22
SMAD4-211ENST00000590499 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.68□□□□□ -0.22
SMAD4-211ENST00000590499 HOOK2Q96ED9 719 aa13.68□□□□□ -0.22
SMAD4-211ENST00000590499 SLC10A4Q96EP9 437 aa13.68□□□□□ -0.22
SMAD4-211ENST00000590499 DCTPP1Q9H773 170 aa13.68□□□□□ -0.22
SMAD4-211ENST00000590499 RNF186Q9NXI6 227 aa13.68□□□□□ -0.22
SMAD4-211ENST00000590499 NDUFB9Q9Y6M9 179 aa13.68□□□□□ -0.22
SMAD4-211ENST00000590499 COL2A1P02458 1487 aaPredicted RBP13.67□□□□□ -0.22
SMAD4-211ENST00000590499 DCAF15Q66K64 600 aa13.67□□□□□ -0.22
SMAD4-211ENST00000590499 NAA16Q6N069 864 aaPredicted RBP13.67□□□□□ -0.22
SMAD4-211ENST00000590499 CRBNQ96SW2 442 aa13.67□□□□□ -0.22
SMAD4-211ENST00000590499 ANTXR1Q9H6X2 564 aa13.67□□□□□ -0.22
SMAD4-211ENST00000590499 ZNF112Q9UJU3 913 aa13.67□□□□□ -0.22
SMAD4-211ENST00000590499 SNCAIPQ9Y6H5 919 aa13.67□□□□□ -0.22
SMAD4-211ENST00000590499 SIPA1L1O43166 1804 aa13.67□□□□□ -0.22
SMAD4-211ENST00000590499 IFIT2P09913 472 aaKnown RBP13.66□□□□□ -0.22
SMAD4-211ENST00000590499 MIGA2Q7L4E1 593 aa13.66□□□□□ -0.22
SMAD4-211ENST00000590499 WRNIP1Q96S55 665 aa13.66□□□□□ -0.22
SMAD4-211ENST00000590499 ZNF341Q9BYN7 854 aa13.66□□□□□ -0.22
SMAD4-211ENST00000590499 LRRCC1Q9C099 1032 aa13.66□□□□□ -0.22
SMAD4-211ENST00000590499 ELP3Q9H9T3 547 aa13.66□□□□□ -0.22
SMAD4-211ENST00000590499 MYH7P12883 1935 aa13.65□□□□□ -0.22
SMAD4-211ENST00000590499 DDTLA6NHG4 134 aaPredicted RBP13.65□□□□□ -0.22
SMAD4-211ENST00000590499 MANSC4A6NHS7 340 aaPredicted RBP13.65□□□□□ -0.22
SMAD4-211ENST00000590499 SPDYE5A6NIY4 337 aa13.65□□□□□ -0.22
SMAD4-211ENST00000590499 TRPA1O75762 1119 aa13.65□□□□□ -0.22
SMAD4-211ENST00000590499 MAP3K10Q02779 954 aa13.65□□□□□ -0.22
SMAD4-211ENST00000590499 SREBF2Q12772 1141 aa13.65□□□□□ -0.22
SMAD4-211ENST00000590499 OPTNQ96CV9 577 aa13.65□□□□□ -0.22
SMAD4-211ENST00000590499 CSADQ9Y600 493 aa13.65□□□□□ -0.22
SMAD4-211ENST00000590499 DOCK1Q14185 1865 aa13.64□□□□□ -0.23
SMAD4-211ENST00000590499 TESPA1A2RU30 521 aaPredicted RBP13.64□□□□□ -0.23
SMAD4-211ENST00000590499 SMARCA5O60264 1052 aaPredicted RBP13.64□□□□□ -0.23
SMAD4-211ENST00000590499 IDH1O75874 414 aaKnown RBP13.64□□□□□ -0.23
SMAD4-211ENST00000590499 PTGDRQ13258 359 aa13.64□□□□□ -0.23
SMAD4-211ENST00000590499 PICALMQ13492 652 aa13.64□□□□□ -0.23
SMAD4-211ENST00000590499 TMED8Q6PL24 325 aaPredicted RBP13.64□□□□□ -0.23
SMAD4-211ENST00000590499 SH3RF3Q8TEJ3 882 aaPredicted RBP13.64□□□□□ -0.23
SMAD4-211ENST00000590499 ZKSCAN4Q969J2 545 aaPredicted RBP13.64□□□□□ -0.23
SMAD4-211ENST00000590499 CFHR5Q9BXR6 569 aa13.64□□□□□ -0.23
SMAD4-211ENST00000590499 AATFQ9NY61 560 aaKnown RBP eCLIP13.64□□□□□ -0.23
SMAD4-211ENST00000590499 PHF20L1A8MW92 1017 aa13.63□□□□□ -0.23
SMAD4-211ENST00000590499 IGF2BP3O00425 579 aaKnown RBP eCLIP13.63□□□□□ -0.23
SMAD4-211ENST00000590499 BAG3O95817 575 aa13.63□□□□□ -0.23
SMAD4-211ENST00000590499 ATP5JP18859 108 aa13.63□□□□□ -0.23
SMAD4-211ENST00000590499 CYP7A1P22680 504 aa13.63□□□□□ -0.23
SMAD4-211ENST00000590499 INPP5BP32019 993 aa13.63□□□□□ -0.23
SMAD4-211ENST00000590499 INHBEP58166 350 aa13.63□□□□□ -0.23
SMAD4-211ENST00000590499 NOL9Q5SY16 702 aaKnown RBP13.63□□□□□ -0.23
SMAD4-211ENST00000590499 TEX11Q8IYF3 940 aa13.63□□□□□ -0.23
SMAD4-211ENST00000590499 TNS4Q8IZW8 715 aa13.63□□□□□ -0.23
SMAD4-211ENST00000590499 OSBPL5Q9H0X9 879 aaPredicted RBP13.63□□□□□ -0.23
SMAD4-211ENST00000590499 PHIPQ8WWQ0 1821 aa13.62□□□□□ -0.23
SMAD4-211ENST00000590499 DDX60LQ5H9U9 1706 aaKnown RBP13.62□□□□□ -0.23
SMAD4-211ENST00000590499 SLURP2P0DP57 97 aa13.62□□□□□ -0.23
SMAD4-211ENST00000590499 MAP3K12Q12852 859 aa13.62□□□□□ -0.23
SMAD4-211ENST00000590499 TTF1Q15361 905 aaPredicted RBP13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms