RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 TMTC2Q8N394 836 aa26.14■■□□□ 1.78
ATG4D-209ENST00000588857 ZSCAN10Q96SZ4 725 aaPredicted RBP26.14■■□□□ 1.78
ATG4D-209ENST00000588857 LY9Q9HBG7 655 aa26.14■■□□□ 1.78
ATG4D-209ENST00000588857 VEZTQ9HBM0 779 aa26.14■■□□□ 1.78
ATG4D-209ENST00000588857 TCP10L2B9ZVM9 353 aa26.13■■□□□ 1.77
ATG4D-209ENST00000588857 NBPF9Q3BBW0 867 aa26.13■■□□□ 1.77
ATG4D-209ENST00000588857 FAM47AQ5JRC9 791 aa26.13■■□□□ 1.77
ATG4D-209ENST00000588857 PI4KBQ9UBF8 816 aa26.13■■□□□ 1.77
ATG4D-209ENST00000588857 SWAP70Q9UH65 585 aa26.13■■□□□ 1.77
ATG4D-209ENST00000588857 COL2A1P02458 1487 aaPredicted RBP26.13■■□□□ 1.77
ATG4D-209ENST00000588857 TNKSO95271 1327 aa26.13■■□□□ 1.77
ATG4D-209ENST00000588857 PFKFB2O60825 505 aa26.12■■□□□ 1.77
ATG4D-209ENST00000588857 PDIA3P30101 505 aaKnown RBP26.12■■□□□ 1.77
ATG4D-209ENST00000588857 TFAP4Q01664 338 aa26.12■■□□□ 1.77
ATG4D-209ENST00000588857 SGMS1Q86VZ5 419 aa26.12■■□□□ 1.77
ATG4D-209ENST00000588857 GTF3C6Q969F1 213 aa26.12■■□□□ 1.77
ATG4D-209ENST00000588857 CHMP4CQ96CF2 233 aa26.12■■□□□ 1.77
ATG4D-209ENST00000588857 EHD4Q9H223 541 aa26.12■■□□□ 1.77
ATG4D-209ENST00000588857 BRPF3Q9ULD4 1205 aa26.12■■□□□ 1.77
ATG4D-209ENST00000588857 CCDC69A6NI79 296 aa26.12■■□□□ 1.77
ATG4D-209ENST00000588857 TSPY3P0CV98 308 aa26.12■■□□□ 1.77
ATG4D-209ENST00000588857 TSPY8P0CW00 308 aa26.12■■□□□ 1.77
ATG4D-209ENST00000588857 RASA1P20936 1047 aa26.12■■□□□ 1.77
ATG4D-209ENST00000588857 CRACR2BQ8N4Y2 399 aaPredicted RBP26.12■■□□□ 1.77
ATG4D-209ENST00000588857 ATRNL1Q5VV63 1379 aa26.11■■□□□ 1.77
ATG4D-209ENST00000588857 DDTLA6NHG4 134 aaPredicted RBP26.11■■□□□ 1.77
ATG4D-209ENST00000588857 GOLGA8BA8MQT2 603 aa26.11■■□□□ 1.77
ATG4D-209ENST00000588857 EPHX2P34913 555 aa26.11■■□□□ 1.77
ATG4D-209ENST00000588857 GABPAQ06546 454 aa26.11■■□□□ 1.77
ATG4D-209ENST00000588857 TBC1D10BQ4KMP7 808 aaPredicted RBP26.11■■□□□ 1.77
ATG4D-209ENST00000588857 SAMD7Q7Z3H4 446 aa26.11■■□□□ 1.77
ATG4D-209ENST00000588857 FAM151AQ8WW52 585 aa26.11■■□□□ 1.77
ATG4D-209ENST00000588857 TRIM34Q9BYJ4 488 aa26.11■■□□□ 1.77
ATG4D-209ENST00000588857 GPRC5DQ9NZD1 345 aa26.11■■□□□ 1.77
ATG4D-209ENST00000588857 TAOK2Q9UL54 1235 aa26.11■■□□□ 1.77
ATG4D-209ENST00000588857 SIPA1L1O43166 1804 aa26.1■■□□□ 1.77
ATG4D-209ENST00000588857 KIF4BQ2VIQ3 1234 aa26.1■■□□□ 1.77
ATG4D-209ENST00000588857 CCDC178Q5BJE1 867 aa26.1■■□□□ 1.77
ATG4D-209ENST00000588857 SYNE3Q6ZMZ3 975 aa26.1■■□□□ 1.77
ATG4D-209ENST00000588857 SH3BP5LQ7L8J4 393 aa26.1■■□□□ 1.77
ATG4D-209ENST00000588857 SLC12A7Q9Y666 1083 aa26.1■■□□□ 1.77
ATG4D-209ENST00000588857 POTEIP0CG38 1075 aa26.09■■□□□ 1.77
ATG4D-209ENST00000588857 POTEJP0CG39 1038 aa26.09■■□□□ 1.77
ATG4D-209ENST00000588857 DDIT3P35638 169 aa26.09■■□□□ 1.77
ATG4D-209ENST00000588857 ST3GAL1Q11201 340 aa26.09■■□□□ 1.77
ATG4D-209ENST00000588857 SEC23AQ15436 765 aa26.09■■□□□ 1.77
ATG4D-209ENST00000588857 FAM83AQ86UY5 434 aa26.09■■□□□ 1.77
ATG4D-209ENST00000588857 FOXP4Q8IVH2 680 aaPredicted RBP26.09■■□□□ 1.77
ATG4D-209ENST00000588857 ENAHQ8N8S7 591 aaPredicted RBP26.09■■□□□ 1.77
ATG4D-209ENST00000588857 SENP2Q9HC62 589 aa26.09■■□□□ 1.77
ATG4D-209ENST00000588857 CHMP5Q9NZZ3 219 aa26.09■■□□□ 1.77
ATG4D-209ENST00000588857 CIZ1Q9ULV3 898 aaPredicted RBP26.09■■□□□ 1.77
ATG4D-209ENST00000588857 SMC3Q9UQE7 1217 aa26.09■■□□□ 1.77
ATG4D-209ENST00000588857 EGFRP00533 1210 aa26.08■■□□□ 1.77
ATG4D-209ENST00000588857 LMOD1P29536 600 aaPredicted RBP26.08■■□□□ 1.77
ATG4D-209ENST00000588857 TNNI2P48788 182 aa26.08■■□□□ 1.77
ATG4D-209ENST00000588857 SCRN1Q12765 414 aa26.08■■□□□ 1.77
ATG4D-209ENST00000588857 IFIT1BQ5T764 474 aaKnown RBP26.08■■□□□ 1.77
ATG4D-209ENST00000588857 CCT2P78371 535 aaKnown RBP26.07■■□□□ 1.76
ATG4D-209ENST00000588857 APOA5Q6Q788 366 aa26.07■■□□□ 1.76
ATG4D-209ENST00000588857 PNMA8AQ86V59 439 aaPredicted RBP26.07■■□□□ 1.76
ATG4D-209ENST00000588857 CSRNP1Q96S65 589 aa26.07■■□□□ 1.76
ATG4D-209ENST00000588857 CNTNAP1P78357 1384 aa26.07■■□□□ 1.76
ATG4D-209ENST00000588857 ZBTB43O43298 467 aa26.07■■□□□ 1.76
ATG4D-209ENST00000588857 NMT2O60551 498 aa26.07■■□□□ 1.76
ATG4D-209ENST00000588857 TNFAIP1Q13829 316 aa26.07■■□□□ 1.76
ATG4D-209ENST00000588857 LDHDQ86WU2 507 aa26.07■■□□□ 1.76
ATG4D-209ENST00000588857 TCP11L1Q9NUJ3 509 aa26.07■■□□□ 1.76
ATG4D-209ENST00000588857 DHX16O60231 1041 aaKnown RBP26.06■■□□□ 1.76
ATG4D-209ENST00000588857 EPS15P42566 896 aa26.06■■□□□ 1.76
ATG4D-209ENST00000588857 EAPPQ56P03 285 aaPredicted RBP26.06■■□□□ 1.76
ATG4D-209ENST00000588857 CHADLQ6NUI6 762 aa26.06■■□□□ 1.76
ATG4D-209ENST00000588857 NEDD1Q8NHV4 660 aa26.06■■□□□ 1.76
ATG4D-209ENST00000588857 HPS5Q9UPZ3 1129 aa26.06■■□□□ 1.76
ATG4D-209ENST00000588857 SHMT1P34896 483 aa26.05■■□□□ 1.76
ATG4D-209ENST00000588857 METAP2P50579 478 aaKnown RBP eCLIP26.05■■□□□ 1.76
ATG4D-209ENST00000588857 APLP1P51693 650 aa26.05■■□□□ 1.76
ATG4D-209ENST00000588857 DGKHQ86XP1 1220 aa26.05■■□□□ 1.76
ATG4D-209ENST00000588857 LLPHQ9BRT6 129 aaKnown RBP26.05■■□□□ 1.76
ATG4D-209ENST00000588857 NCOA5Q9HCD5 579 aaKnown RBP26.05■■□□□ 1.76
ATG4D-209ENST00000588857 MICU3Q86XE3 530 aa26.04■■□□□ 1.76
ATG4D-209ENST00000588857 RAB11FIP4Q86YS3 637 aa26.04■■□□□ 1.76
ATG4D-209ENST00000588857 IL17RBQ9NRM6 502 aa26.04■■□□□ 1.76
ATG4D-209ENST00000588857 SCN4AP35499 1836 aa26.04■■□□□ 1.76
ATG4D-209ENST00000588857 CATIPQ7Z7H3 387 aa26.03■■□□□ 1.76
ATG4D-209ENST00000588857 ZNF654Q8IZM8 581 aa26.03■■□□□ 1.76
ATG4D-209ENST00000588857 GOLGA8AA7E2F4 631 aa26.03■■□□□ 1.76
ATG4D-209ENST00000588857 GJB2P29033 226 aa26.03■■□□□ 1.76
ATG4D-209ENST00000588857 RCAN1P53805 252 aa26.03■■□□□ 1.76
ATG4D-209ENST00000588857 METTL16Q86W50 562 aaKnown RBP26.03■■□□□ 1.76
ATG4D-209ENST00000588857 CCDC17Q96LX7 622 aa26.03■■□□□ 1.76
ATG4D-209ENST00000588857 TMEM39BQ9GZU3 492 aa26.03■■□□□ 1.76
ATG4D-209ENST00000588857 HERC5Q9UII4 1024 aaKnown RBP26.03■■□□□ 1.76
ATG4D-209ENST00000588857 CPLX1O14810 134 aa26.02■■□□□ 1.76
ATG4D-209ENST00000588857 ANKS1AQ92625 1134 aa26.02■■□□□ 1.76
ATG4D-209ENST00000588857 MYL10Q9BUA6 226 aa26.02■■□□□ 1.76
ATG4D-209ENST00000588857 DNAJC18Q9H819 358 aa26.02■■□□□ 1.76
ATG4D-209ENST00000588857 KAT14Q9H8E8 782 aa26.02■■□□□ 1.76
ATG4D-209ENST00000588857 CLEC11AQ9Y240 323 aa26.02■■□□□ 1.76
ATG4D-209ENST00000588857 FAM196BA6NMK8 535 aa26.01■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms